Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00772 Nelumbo nucifera HOM05D001629 ORTHO05D003842 1.6e-36 155.6 79 100.0
Nn2g11902 Nelumbo nucifera HOM05D001629 ORTHO05D003842 5.6e-18 94.0 60 85.0
Nn8g39343 Nelumbo nucifera HOM05D001629 ORTHO05D003842 1.7e-14 82.4 59 76.3
CDE01G0261 Ceratophyllum demersum HOM05D001629 ORTHO05D003842 2.9e-14 81.6 62 64.5
CDE02G3382 Ceratophyllum demersum HOM05D001629 ORTHO05D003842 2.9e-14 81.6 62 64.5
TAR383G0187 Trochodendron aralioides HOM05D001629 ORTHO05D003842 8.4e-14 80.1 60 70.0
CSS0040650 Camellia sinensis var. sinensis HOM05D001629 ORTHO05D003842 1.9e-13 79.0 62 67.7
TAR626G1732 Trochodendron aralioides HOM05D001629 ORTHO05D003842 1.9e-13 79.0 60 70.0
TAR636G3140 Trochodendron aralioides HOM05D001629 ORTHO05D003842 3.2e-13 78.2 60 70.0
Hma1.2p1_0515F.1_g170350 Hydrangea macrophylla HOM05D001629 ORTHO05D003842 4.2e-13 77.8 60 65.0
Dinv38080 Davidia involucrata HOM05D001629 ORTHO05D003842 7.1e-13 77.0 60 66.7
TAR625G1051 Trochodendron aralioides HOM05D001629 ORTHO05D003842 7.1e-13 77.0 60 68.3
Actinidia15809 Actinidia chinensis HOM05D001629 ORTHO05D003842 1.2e-12 76.3 62 64.5
vmacro18952 Vaccinium macrocarpon HOM05D001629 ORTHO05D003842 1.6e-12 75.9 60 65.0
Rhsim08G0217400 Rhododendron simsii HOM05D001629 ORTHO05D003842 2.1e-12 75.5 60 63.3
MBI04_g00951_MAGBIO Magnolia biondii HOM05D001629 ORTHO05D003842 2.7e-12 75.1 63 61.9
Aqoxy7G01988 Aquilegia oxysepala HOM05D001629 ORTHO05D003842 7.9e-12 73.6 59 62.7
Dinv30554 Davidia involucrata HOM05D001629 ORTHO05D003842 1.0e-11 73.2 60 65.0
Lj5A67T54 Lonicera japonica HOM05D001629 ORTHO05D003842 2.3e-11 72.0 60 63.3
Sopen03g038870 Solanum pennellii HOM05D001629 ORTHO05D003842 6.7e-11 70.5 57 59.6
PGSC0003DMG400005696 Solanum tuberosum HOM05D001629 ORTHO05D003842 6.7e-11 70.5 57 59.6
Solyc06g067890.3 Solanum lycopersicum HOM05D001629 ORTHO05D003842 1.5e-10 69.3 59 55.9
Sopen06g025170 Solanum pennellii HOM05D001629 ORTHO05D003842 1.5e-10 69.3 59 55.9
Solyc03g119990.4 Solanum lycopersicum HOM05D001629 ORTHO05D003842 1.9e-10 68.9 57 57.9
PGSC0003DMG400028548 Solanum tuberosum HOM05D001629 ORTHO05D003842 1.9e-10 68.9 59 55.9
Nitab4.5_0003512g0010 Nicotiana tabacum HOM05D001629 ORTHO05D003842 2.5e-10 68.6 59 55.9
CAN.G395.37 Capsicum annuum HOM05D001629 ORTHO05D003842 5.6e-10 67.4 59 54.2
Lsat_1_v5_gn_1_33701 Lactuca sativa HOM05D001629 ORTHO05D003842 5.6e-10 67.4 62 59.7
Lj9A503T44 Lonicera japonica HOM05D001629 ORTHO05D003842 5.6e-10 67.4 60 56.7
Nitab4.5_0000620g0170 Nicotiana tabacum HOM05D001629 ORTHO05D003842 5.6e-10 67.4 59 54.2
AUR62016405 Chenopodium quinoa HOM05D001629 ORTHO05D003842 7.4e-10 67.0 52 69.2
Peaxi162Scf00207g00740 Petunia axillaris HOM05D001629 ORTHO05D003842 9.6e-10 66.6 61 55.7
CAN.G438.91 Capsicum annuum HOM05D001629 ORTHO05D003842 1.3e-09 66.2 56 57.1
Lsat_1_v5_gn_5_132821 Lactuca sativa HOM05D001629 ORTHO05D003842 1.3e-09 66.2 62 58.1
DCAR_025468 Daucus carota HOM05D001629 ORTHO05D003842 2.1e-09 65.5 61 54.1
GSVIVG01017215001 Vitis vinifera HOM05D001629 ORTHO05D003842 2.1e-09 65.5 60 55.0
AUR62011590 Chenopodium quinoa HOM05D001629 ORTHO05D003842 2.8e-09 65.1 51 70.6
PSO017G4027 Papaver somniferum HOM05D001629 ORTHO05D003842 4.8e-09 64.3 57 59.6
PSO170G0320 Papaver somniferum HOM05D001629 ORTHO05D003842 4.8e-09 64.3 57 59.6
Atru.chr1.3158 Acer truncatum HOM05D001629 ORTHO05D003842 6.2e-09 63.9 62 54.8
FvH4_6g30590 Fragaria vesca HOM05D001629 ORTHO05D003842 6.2e-09 63.9 60 56.7
FAN09G3957 Fragaria x ananassa HOM05D001629 ORTHO05D003842 6.2e-09 63.9 60 56.7
FAN14G3427 Fragaria x ananassa HOM05D001629 ORTHO05D003842 6.2e-09 63.9 60 56.7
Cpa.g.sc10.201 Carica papaya HOM05D001629 ORTHO05D003842 8.1e-09 63.5 58 58.6
Prupe.3G077700 Prunus persica HOM05D001629 ORTHO05D003842 8.1e-09 63.5 60 56.7
Lalb_Chr22g0351061 Lupinus albus HOM05D001629 ORTHO05D003842 1.1e-08 63.2 60 55.0
Sc12g0008950 Simmondsia chinensis HOM05D001629 ORTHO05D003842 1.1e-08 63.2 55 63.6
MD17G1202000 Malus domestica HOM05D001629 ORTHO05D003842 1.4e-08 62.8 60 56.7
EL10Ac9g21963 Beta vulgaris HOM05D001629 ORTHO05D003842 1.8e-08 62.4 52 65.4
MD09G1218700 Malus domestica HOM05D001629 ORTHO05D003842 1.8e-08 62.4 60 56.7
RcHm_v2.0_Chr2g0137001 Rosa chinensis HOM05D001629 ORTHO05D003842 1.8e-08 62.4 60 56.7
Haze_16498 Corylus avellana HOM05D001629 ORTHO05D003842 2.4e-08 62.0 56 57.1
Haze_16500 Corylus avellana HOM05D001629 ORTHO05D003842 2.4e-08 62.0 56 57.1
HanXRQChr04g0096811 Helianthus annuus HOM05D001629 ORTHO05D003842 2.4e-08 62.0 61 57.4
Lalb_Chr14g0373601 Lupinus albus HOM05D001629 ORTHO05D003842 2.4e-08 62.0 60 51.7
Sed0020470 Sechium edule HOM05D001629 ORTHO05D003842 2.4e-08 62.0 60 55.0
ClCG09G002540 Citrullus lanatus HOM05D001629 ORTHO05D003842 3.1e-08 61.6 60 55.0
MELO3C023388.2 Cucumis melo HOM05D001629 ORTHO05D003842 3.1e-08 61.6 60 55.0
CsaV3_7G032780 Cucumis sativus L. HOM05D001629 ORTHO05D003842 3.1e-08 61.6 60 55.0
HanXRQChr10g0304531 Helianthus annuus HOM05D001629 ORTHO05D003842 3.1e-08 61.6 61 52.5
BcaC05g25626 Brassica carinata HOM05D001629 ORTHO05D003842 4.0e-08 61.2 58 58.6
HanXRQChr02g0032521 Helianthus annuus HOM05D001629 ORTHO05D003842 4.0e-08 61.2 60 55.0
A06p11550 Brassica napus HOM05D001629 ORTHO05D003842 5.3e-08 60.8 58 58.6
C05p13680 Brassica napus HOM05D001629 ORTHO05D003842 5.3e-08 60.8 58 56.9
BolC5t30105H Brassica oleracea HOM05D001629 ORTHO05D003842 5.3e-08 60.8 58 56.9
BraA06t24329Z Brassica rapa HOM05D001629 ORTHO05D003842 5.3e-08 60.8 58 58.6
TWI75G0218 Tripterygium wilfordii HOM05D001629 ORTHO05D003842 5.3e-08 60.8 62 54.8
CANSAT56G2113 Cannabis sativa HOM05D001629 ORTHO05D003842 6.9e-08 60.5 60 55.0
Oeu020518.1 Olea europaea HOM05D001629 ORTHO05D003842 9.0e-08 60.1 60 51.7
THA.LOC104808220 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 1.2e-07 59.7 59 55.9
Aa31LG4G560 Aethionema arabicum HOM05D001629 ORTHO05D003842 2.0e-07 58.9 58 55.2
Ciclev10025112m.g Citrus clementina HOM05D001629 ORTHO05D003842 2.0e-07 58.9 53 54.7
AL1G27610 Arabidopsis lyrata HOM05D001629 ORTHO05D003842 2.6e-07 58.5 51 60.8
AT1G15490 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 2.6e-07 58.5 51 60.8
arahy.Tifrunner.gnm1.ann1.62DI5E Arachis hypogaea HOM05D001629 ORTHO05D003842 2.6e-07 58.5 60 50.0
arahy.Tifrunner.gnm1.ann1.I8612F Arachis hypogaea HOM05D001629 ORTHO05D003842 2.6e-07 58.5 60 50.0
Ca_01093_v3 Cicer arietinum L. HOM05D001629 ORTHO05D003842 2.6e-07 58.5 60 48.3
Migut.I00812 Erythranthe guttata HOM05D001629 ORTHO05D003842 2.6e-07 58.5 62 46.8
THA.LOC104812487 Tarenaya hassleriana HOM05D001629 ORTHO05D003842 2.6e-07 58.5 58 56.9
Glyma.13G362400 Glycine max HOM05D001629 ORTHO05D003842 3.4e-07 58.2 61 50.8
Manes.04G119000 Manihot esculenta HOM05D001629 ORTHO05D003842 3.4e-07 58.2 63 52.4
PGR102G2868 Punica granatum HOM05D001629 ORTHO05D003842 3.4e-07 58.2 59 55.9
BcaC05g25500 Brassica carinata HOM05D001629 ORTHO05D003842 4.5e-07 57.8 51 60.8
Glyma.15G011400 Glycine max HOM05D001629 ORTHO05D003842 4.5e-07 57.8 61 49.2
FAN02G1507 Fragaria x ananassa HOM05D001629 ORTHO05D003842 5.8e-07 57.4 60 55.0
Lalb_Chr04g0262531 Lupinus albus HOM05D001629 ORTHO05D003842 5.8e-07 57.4 60 46.7
QL05p027122 Quercus lobata HOM05D001629 ORTHO05D003842 5.8e-07 57.4 58 56.9
Sp1g13850 Schrenkiella parvula HOM05D001629 ORTHO05D003842 5.8e-07 57.4 51 58.8
Hund00570 Selenicereus undatus HOM05D001629 ORTHO05D003842 5.8e-07 57.4 52 57.7
Medtr2g102800 Medicago truncatula HOM05D001629 ORTHO05D003842 7.6e-07 57.0 60 48.3
SEGI_32935 Sequoiadendron giganteum HOM05D001629 ORTHO05D003842 7.6e-07 57.0 52 55.8
SGA_v2.0_scaffold16G07628 Striga asiatica HOM05D001629 ORTHO05D003842 7.6e-07 57.0 52 53.8
Glyma.14G059800 Glycine max HOM05D001629 ORTHO05D004216 9.9e-07 56.6 62 46.8
Gohir.A05G124200 Gossypium hirsutum HOM05D001629 ORTHO05D003842 9.9e-07 56.6 53 58.5
Gohir.D05G125200 Gossypium hirsutum HOM05D001629 ORTHO05D003842 9.9e-07 56.6 53 58.5
Gorai.009G129200 Gossypium raimondii HOM05D001629 ORTHO05D003842 9.9e-07 56.6 53 58.5
VMungo1080G0185 Vigna mungo HOM05D001629 ORTHO05D003842 9.9e-07 56.6 60 48.3
AT1G80280 Arabidopsis thaliana HOM05D001629 ORTHO05D003842 1.3e-06 56.2 60 48.3
Oeu052307.2 Olea europaea HOM05D001629 ORTHO05D003842 1.3e-06 56.2 60 48.3
AL2G41220 Arabidopsis lyrata HOM05D001629 ORTHO05D003842 1.7e-06 55.8 60 48.3
Phvul.005G174100 Phaseolus vulgaris HOM05D001629 ORTHO05D003842 1.7e-06 55.8 62 46.8
Thhalv10018250m.g Eutrema salsugineum HOM05D001629 ORTHO05D003842 2.2e-06 55.5 60 48.3
Lalb_Chr07g0177431 Lupinus albus HOM05D001629 ORTHO05D003842 2.2e-06 55.5 60 46.7
Sp5g35530 Schrenkiella parvula HOM05D001629 ORTHO05D003842 2.2e-06 55.5 62 46.8
Thecc.06G077000 Theobroma cacao HOM05D001629 ORTHO05D003842 2.2e-06 55.5 53 54.7
TPR.G38620 Trifolium pratense HOM05D001629 ORTHO05D003842 2.2e-06 55.5 57 47.4
HanXRQChr16g0504231 Helianthus annuus HOM05D001629 ORTHO05D003842 2.9e-06 55.1 60 48.3
CARHR074210 Cardamine hirsuta HOM05D001629 ORTHO05D003842 3.8e-06 54.7 53 50.9
Lj3g0014600 Lotus japonicus HOM05D001629 ORTHO05D003842 3.8e-06 54.7 52 53.8
Carub.0002s2728 Capsella rubella HOM05D001629 ORTHO05D003842 4.9e-06 54.3 61 50.8
Psat0s2701g0040 Pisum sativum HOM05D001629 ORTHO05D003842 4.9e-06 54.3 60 45.0
Sabra03G0034000 Salix brachista HOM05D001629 ORTHO05D003842 4.9e-06 54.3 53 52.8
HPP92_023330 Vanilla planifolia HOM05D001629 ORTHO05D003842 4.9e-06 54.3 55 54.5
Duzib235G1342 Durio zibethinus HOM05D001629 ORTHO05D003842 6.4e-06 53.9 53 54.7
Glyma.02G256900 Glycine max HOM05D001629 ORTHO05D004216 6.4e-06 53.9 62 45.2
SGA_v2.0_scaffold37G14797 Striga asiatica HOM05D001629 ORTHO05D003842 6.4e-06 53.9 52 46.2
BraA02t07361Z Brassica rapa HOM05D001629 ORTHO05D003842 8.4e-06 53.5 55 49.1


User provided reference genes

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