Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00745 Nelumbo nucifera HOM05D002386 ORTHO05D008413 2.7e-56 221.9 121 100.0
Nn1g07626 Nelumbo nucifera HOM05D002386 ORTHO05D008413 5.7e-38 161.0 119 84.0
TAR627G0796 Trochodendron aralioides HOM05D002386 ORTHO05D008413 5.9e-27 124.4 110 64.5
Ciclev10007343m.g Citrus clementina HOM05D002386 ORTHO05D008413 5.2e-23 111.3 108 57.4
Solyc07g066180.2 Solanum lycopersicum HOM05D002386 ORTHO05D008413 1.5e-22 109.8 112 58.9
Sopen07g034360 Solanum pennellii HOM05D002386 ORTHO05D008413 1.5e-22 109.8 112 58.9
Duzib213G0348 Durio zibethinus HOM05D002386 ORTHO05D008413 3.4e-22 108.6 111 58.6
Haze_09918 Corylus avellana HOM05D002386 ORTHO05D008413 4.4e-22 108.2 110 58.2
Manes.05G204600 Manihot esculenta HOM05D002386 ORTHO05D008413 4.4e-22 108.2 113 58.4
Rhsim06G0235300 Rhododendron simsii HOM05D002386 ORTHO05D008413 4.4e-22 108.2 118 58.5
Actinidia30348 Actinidia chinensis HOM05D002386 ORTHO05D008413 9.8e-22 107.1 112 58.0
PGSC0003DMG400046546 Solanum tuberosum HOM05D002386 ORTHO05D008413 9.8e-22 107.1 112 57.1
TWI39G1050 Tripterygium wilfordii HOM05D002386 ORTHO05D008413 9.8e-22 107.1 117 54.7
Cfa016963 Carpinus fangiana HOM05D002386 ORTHO05D008413 2.9e-21 105.5 110 57.3
Thecc.07G001300 Theobroma cacao HOM05D002386 ORTHO05D008413 3.7e-21 105.1 111 56.8
Potri.001G472200 Populus trichocarpa HOM05D002386 ORTHO05D008413 8.3e-21 104.0 108 62.0
vmacro11642 Vaccinium macrocarpon HOM05D002386 ORTHO05D008413 8.3e-21 104.0 114 57.0
CAN.G623.76 Capsicum annuum HOM05D002386 ORTHO05D008413 1.1e-20 103.6 125 52.8
Nitab4.5_0000152g0050 Nicotiana tabacum HOM05D002386 ORTHO05D008413 1.1e-20 103.6 124 54.8
Nitab4.5_0001732g0070 Nicotiana tabacum HOM05D002386 ORTHO05D008413 1.1e-20 103.6 124 54.8
Oeu015273.2 Olea europaea HOM05D002386 ORTHO05D008413 9.2e-20 100.5 114 56.1
Dinv40918 Davidia involucrata HOM05D002386 ORTHO05D008413 1.2e-19 100.1 97 61.9
Sp6g18070 Schrenkiella parvula HOM05D002386 ORTHO05D008413 1.6e-19 99.8 110 57.3
Cpa.g.sc12.63 Carica papaya HOM05D002386 ORTHO05D008413 2.0e-19 99.4 110 55.5
Lj1P901T14 Lonicera japonica HOM05D002386 ORTHO05D008413 4.6e-19 98.2 110 56.4
Sabra16G0320500 Salix brachista HOM05D002386 ORTHO05D008413 4.6e-19 98.2 108 61.1
Thhalv10012581m.g Eutrema salsugineum HOM05D002386 ORTHO05D008413 1.0e-18 97.1 110 55.5
MELO3C014062.2 Cucumis melo HOM05D002386 ORTHO05D008413 1.3e-18 96.7 110 51.8
Peaxi162Scf00232g00071 Petunia axillaris HOM05D002386 ORTHO05D008413 1.3e-18 96.7 105 64.8
ClCG00G001210 Citrullus lanatus HOM05D002386 ORTHO05D008413 1.7e-18 96.3 110 51.8
ClCG10G003830 Citrullus lanatus HOM05D002386 ORTHO05D008413 1.7e-18 96.3 110 51.8
ClCG10G003940 Citrullus lanatus HOM05D002386 ORTHO05D008413 1.7e-18 96.3 110 51.8
CsaV3_3G003810 Cucumis sativus L. HOM05D002386 ORTHO05D008413 1.7e-18 96.3 110 51.8
Duzib268G1092 Durio zibethinus HOM05D002386 ORTHO05D008413 2.3e-18 95.9 112 53.6
DCAR_017613 Daucus carota HOM05D002386 ORTHO05D008413 3.0e-18 95.5 111 55.0
MBI15_g35995_MAGBIO Magnolia biondii HOM05D002386 ORTHO05D008413 3.0e-18 95.5 107 55.1
Sed0001040 Sechium edule HOM05D002386 ORTHO05D008413 8.6e-18 94.0 111 55.0
Carub.0008s1654 Capsella rubella HOM05D002386 ORTHO05D008413 1.1e-17 93.6 110 53.6
Gohir.A04G001000 Gossypium hirsutum HOM05D002386 ORTHO05D008413 2.5e-17 92.4 114 53.5
Gohir.D05G388600 Gossypium hirsutum HOM05D002386 ORTHO05D008413 2.5e-17 92.4 114 53.5
Gorai.009G455000 Gossypium raimondii HOM05D002386 ORTHO05D008413 2.5e-17 92.4 114 53.5
AL191U10010 Arabidopsis lyrata HOM05D002386 ORTHO05D008413 3.3e-17 92.0 111 54.1
AL8G31850 Arabidopsis lyrata HOM05D002386 ORTHO05D008413 3.3e-17 92.0 111 54.1
Cc05_g15730 Coffea canephora HOM05D002386 ORTHO05D008413 5.6e-17 91.3 115 54.8
AT5G56220 Arabidopsis thaliana HOM05D002386 ORTHO05D008413 9.5e-17 90.5 111 53.2
QL08p000477 Quercus lobata HOM05D002386 ORTHO05D008413 1.2e-16 90.1 112 62.5
Psat5g231320 Pisum sativum HOM05D002386 ORTHO05D008413 2.1e-16 89.4 108 50.9
EL10Ac4g07495 Beta vulgaris HOM05D002386 ORTHO05D008413 3.6e-16 88.6 110 53.6
ECA236G2603 Erigeron canadensis HOM05D002386 ORTHO05D008413 3.6e-16 88.6 117 52.1
VMungo1080G0552 Vigna mungo HOM05D002386 ORTHO05D008413 1.1e-15 87.0 108 48.1
CARHR269620 Cardamine hirsuta HOM05D002386 ORTHO05D008413 1.4e-15 86.7 111 51.4
Lsat_1_v5_gn_7_115560 Lactuca sativa HOM05D002386 ORTHO05D008413 3.1e-15 85.5 115 53.9
Medtr3g009560 Medicago truncatula HOM05D002386 ORTHO05D008413 3.1e-15 85.5 108 56.5
CSS0025533 Camellia sinensis var. sinensis HOM05D002386 ORTHO05D008413 4.0e-15 85.1 110 50.9
Oeu052023.3 Olea europaea HOM05D002386 ORTHO05D008413 4.0e-15 85.1 115 51.3
Lalb_Chr15g0079921 Lupinus albus HOM05D002386 ORTHO05D008413 5.2e-15 84.7 108 47.2
Prupe.6G035600 Prunus persica HOM05D002386 ORTHO05D008413 6.8e-15 84.3 112 53.6
TPR.G16687 Trifolium pratense HOM05D002386 ORTHO05D008413 8.9e-15 84.0 108 49.1
Ca_14131_v3 Cicer arietinum L. HOM05D002386 ORTHO05D008413 1.2e-14 83.6 107 49.5
Glyma.04G114100 Glycine max HOM05D002386 ORTHO05D008413 2.0e-14 82.8 100 48.0
Glyma.06G321200 Glycine max HOM05D002386 ORTHO05D008413 3.4e-14 82.0 100 48.0
PSO541G0276 Papaver somniferum HOM05D002386 ORTHO05D008413 9.8e-14 80.5 127 46.5
PSO675G8286 Papaver somniferum HOM05D002386 ORTHO05D008413 9.8e-14 80.5 128 46.1
PGR083G1053 Punica granatum HOM05D002386 ORTHO05D008413 1.7e-13 79.7 116 45.7
THA.LOC104817726 Tarenaya hassleriana HOM05D002386 ORTHO05D008413 2.2e-13 79.3 110 49.1
CDE06G0064 Ceratophyllum demersum HOM05D002386 ORTHO05D008413 2.9e-13 79.0 125 52.8
Phvul.005G005000 Phaseolus vulgaris HOM05D002386 ORTHO05D008413 4.9e-13 78.2 108 47.2
Aqoxy5G00456 Aquilegia oxysepala HOM05D002386 ORTHO05D008413 6.4e-13 77.8 111 53.2
CDE03G0291 Ceratophyllum demersum HOM05D002386 ORTHO05D008413 1.4e-12 76.6 118 54.2
A10p13460 Brassica napus HOM05D002386 ORTHO05D008413 1.9e-12 76.3 110 48.2
C09p47460 Brassica napus HOM05D002386 ORTHO05D008413 1.9e-12 76.3 110 48.2
BolC9t57601H Brassica oleracea HOM05D002386 ORTHO05D008413 1.9e-12 76.3 110 48.2
BraA10t43448Z Brassica rapa HOM05D002386 ORTHO05D008413 1.9e-12 76.3 110 48.2
Eucgr.F01987 Eucalyptus grandis HOM05D002386 ORTHO05D008413 1.9e-12 76.3 94 58.5
FAN16G0264 Fragaria x ananassa HOM05D002386 ORTHO05D008413 2.4e-12 75.9 110 49.1
Sc16g0005440 Simmondsia chinensis HOM05D002386 ORTHO05D008413 2.4e-12 75.9 92 56.5
CANSAT11G0301 Cannabis sativa HOM05D002386 ORTHO05D008413 4.1e-12 75.1 122 49.2
Lj3g0005841 Lotus japonicus HOM05D002386 ORTHO05D008413 7.1e-12 74.3 108 50.9
COL.COLO4_07792 Corchorus olitorius HOM05D002386 ORTHO05D008413 1.6e-11 73.2 117 45.3
FvH4_3g41580 Fragaria vesca HOM05D002386 ORTHO05D008413 2.7e-11 72.4 110 47.3
FAN11G1107 Fragaria x ananassa HOM05D002386 ORTHO05D008413 2.7e-11 72.4 110 47.3
GSVIVG01014847001 Vitis vinifera HOM05D002386 ORTHO05D008413 3.5e-11 72.0 78 57.7
FAN25G0463 Fragaria x ananassa HOM05D002386 ORTHO05D008413 4.6e-11 71.6 110 47.3
CDE02G0323 Ceratophyllum demersum HOM05D002386 ORTHO05D008413 2.3e-10 69.3 110 44.5
HPP92_026709 Vanilla planifolia HOM05D002386 ORTHO05D008413 6.6e-10 67.8 107 54.2
SGA_v2.0_scaffold92G28155 Striga asiatica HOM05D002386 ORTHO05D008413 5.6e-09 64.7 82 51.2
MSTRG.14527 Avicennia marina HOM05D002386 ORTHO05D008413 2.8e-08 62.4 101 45.5
Ah.02g130660 Amaranthus hybridus HOM05D002386 ORTHO05D008413 2.3e-07 59.3 83 55.4
Os08g0499100 Oryza sativa ssp. japonica HOM05D002386 ORTHO05D008413 3.1e-07 58.9 68 67.6
Aa31LG3G12130 Aethionema arabicum HOM05D002386 ORTHO05D008413 1.5e-06 56.6 81 51.9
Dinv19641 Davidia involucrata HOM05D002386 ORTHO05D008413 2.6e-06 55.8 76 63.2
HanXRQChr11g0335531 Helianthus annuus HOM05D002386 ORTHO05D008413 9.9e-06 53.9 117 39.3


User provided reference genes

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