Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00688 Nelumbo nucifera HOM05D000665 ORTHO05D000921 7.0e-79 297.4 165 100.0
Nn2g12467 Nelumbo nucifera HOM05D000665 ORTHO05D000921 2.3e-29 132.9 103 58.3
Nn2g15109 Nelumbo nucifera HOM05D000665 ORTHO05D000921 1.6e-22 110.2 92 53.3
Nn1g08111 Nelumbo nucifera HOM05D000665 ORTHO05D000285 6.0e-22 108.2 109 45.9
Nn1g08091 Nelumbo nucifera HOM05D033481 ORTHO05D000285 9.0e-18 94.4 101 44.6
Nn6g31592 Nelumbo nucifera HOM05D000665 ORTHO05D000921 1.9e-12 76.6 60 58.3
CSS0000387 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.8e-11 72.0 109 35.8
CSS0041063 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.8e-11 72.0 103 35.0
CSS0007077 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 6.2e-11 71.6 108 36.1
CSS0008427 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 1.4e-10 70.5 99 36.4
Nn3g20890 Nelumbo nucifera HOM05D000665 ORTHO05D000921 1.4e-10 70.5 65 49.2
CSS0049933 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 2.4e-10 69.7 101 34.7
Hma1.2p1_2380F.1_g320966 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 2.4e-10 69.7 100 37.0
QL01p020889 Quercus lobata HOM05D000665 ORTHO05D000921 2.4e-10 69.7 94 39.4
TAR626G0805 Trochodendron aralioides HOM05D000665 ORTHO05D000285 2.4e-10 69.7 91 37.4
Dinv29345 Davidia involucrata HOM05D000665 ORTHO05D000921 3.1e-10 69.3 91 39.6
CSS0004715 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.0e-10 68.9 109 34.9
CSS0029683 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.0e-10 68.9 109 34.9
CSS0047450 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 4.0e-10 68.9 109 34.9
CSS0028686 Camellia sinensis var. sinensis HOM05D000665 ORTHO05D000921 5.3e-10 68.6 91 38.5
Hma1.2p1_1786F.1_g302300 Hydrangea macrophylla HOM05D000665 ORTHO05D000921 6.9e-10 68.2 100 37.0
CANSAT11G2265 Cannabis sativa HOM05D007209 ORTHO05D000921 9.0e-10 67.8 107 34.6
CANSAT25G0660 Cannabis sativa HOM05D000665 ORTHO05D000921 9.0e-10 67.8 107 34.6
Nn7g36170 Nelumbo nucifera HOM05D000665 ORTHO05D277052 1.2e-09 67.4 54 61.1
Nn5g29893 Nelumbo nucifera HOM05D000665 ORTHO05D000140 3.4e-09 65.9 86 37.2
CANSAT54G0727 Cannabis sativa HOM05D007209 ORTHO05D000921 5.8e-09 65.1 94 34.0
TAR599G0002 Trochodendron aralioides HOM05D007209 ORTHO05D000921 7.6e-09 64.7 103 36.9
COL.COLO4_25265 Corchorus olitorius HOM05D007209 ORTHO05D000921 1.3e-08 63.9 93 35.5
TWI09G1246 Tripterygium wilfordii HOM05D000665 ORTHO05D000921 1.3e-08 63.9 104 34.6
Actinidia03712 Actinidia chinensis HOM05D000665 ORTHO05D000921 1.7e-08 63.5 94 34.0
AUR62040593 Chenopodium quinoa HOM05D007209 ORTHO05D000921 1.7e-08 63.5 111 32.4
MELO3C009866.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.2e-08 63.2 108 34.3
TAR080G0001 Trochodendron aralioides HOM05D000034 ORTHO05D000037 2.2e-08 63.2 105 34.3
CANSAT01G1814 Cannabis sativa HOM05D007209 ORTHO05D000921 3.8e-08 62.4 79 36.7
ClCG10G015090 Citrullus lanatus HOM05D007209 ORTHO05D000921 4.9e-08 62.0 90 38.9
QL05p062248 Quercus lobata HOM05D003171 ORTHO05D000921 6.5e-08 61.6 93 30.1
Atru.chr2.1871 Acer truncatum HOM05D001008 ORTHO05D003293 1.1e-07 60.8 97 28.9
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 1.1e-07 60.8 92 34.8
CsaV3_3G041440 Cucumis sativus L. HOM05D007209 ORTHO05D000921 1.4e-07 60.5 113 31.9
QL02p070399 Quercus lobata HOM05D003171 ORTHO05D000921 1.9e-07 60.1 93 30.1
QL05p040133 Quercus lobata HOM05D003171 ORTHO05D000921 1.9e-07 60.1 93 30.1
QL09p025174 Quercus lobata HOM05D003171 ORTHO05D000921 1.9e-07 60.1 93 30.1
QL09p032434 Quercus lobata HOM05D003171 ORTHO05D000921 1.9e-07 60.1 93 30.1
QL10p053818 Quercus lobata HOM05D003171 ORTHO05D000921 1.9e-07 60.1 93 30.1
TAR597G0002 Trochodendron aralioides HOM05D007209 ORTHO05D000921 1.9e-07 60.1 103 35.9
Hma1.2p1_0805F.1_g221293 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 2.5e-07 59.7 112 30.4
Hma1.2p1_0805F.1_g221299 Hydrangea macrophylla HOM05D007209 ORTHO05D000921 2.5e-07 59.7 112 30.4
Nn1g02527 Nelumbo nucifera HOM05D000665 ORTHO05D000921 2.5e-07 59.7 93 35.5
Atru.chr5.3274 Acer truncatum HOM05D003171 ORTHO05D000921 3.2e-07 59.3 94 30.9
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 3.2e-07 59.3 89 33.7
MELO3C032092.2 Cucumis melo HOM05D007209 ORTHO05D000921 4.2e-07 58.9 90 37.8
Nn3g16139 Nelumbo nucifera HOM05D000665 ORTHO05D000285 4.2e-07 58.9 93 34.4
Nn3g20404 Nelumbo nucifera HOM05D000665 ORTHO05D000285 4.2e-07 58.9 93 34.4
Eucgr.F03745 Eucalyptus grandis HOM05D000665 ORTHO05D000285 5.5e-07 58.5 84 34.5
QL06p033820 Quercus lobata HOM05D003171 ORTHO05D000921 5.5e-07 58.5 90 28.9
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 5.5e-07 58.5 94 31.9
HPP92_008179 Vanilla planifolia HOM05D000876 ORTHO05D000285 5.5e-07 58.5 69 37.7
TWI38G2389 Tripterygium wilfordii HOM05D003171 ORTHO05D000921 7.1e-07 58.2 90 34.4
GSVIVG01038689001 Vitis vinifera HOM05D000665 ORTHO05D000921 7.1e-07 58.2 78 37.2
MELO3C034280.2 Cucumis melo HOM05D007209 ORTHO05D000921 9.3e-07 57.8 90 35.6
FvH4_7g00340 Fragaria vesca HOM05D003171 ORTHO05D000921 9.3e-07 57.8 94 30.9
Glyma.01G164400 Glycine max HOM05D000665 ORTHO05D003147 9.3e-07 57.8 115 31.3
CARHR207460 Cardamine hirsuta HOM05D000876 ORTHO05D000285 1.6e-06 57.0 89 33.7
Ciclev10006719m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.6e-06 57.0 94 30.9
Ciclev10033416m.g Citrus clementina HOM05D003171 ORTHO05D000921 1.6e-06 57.0 92 30.4
MELO3C030897.2 Cucumis melo HOM05D007209 ORTHO05D000921 1.6e-06 57.0 90 35.6
Lj2g0027355 Lotus japonicus HOM05D000665 ORTHO05D003147 1.6e-06 57.0 115 29.6
QL03p032583 Quercus lobata HOM05D000034 ORTHO05D000921 1.6e-06 57.0 91 33.0
QL04p024672 Quercus lobata HOM05D000034 ORTHO05D000921 1.6e-06 57.0 91 33.0
TPR.G10520 Trifolium pratense HOM05D000665 ORTHO05D003147 1.6e-06 57.0 115 30.4
Carub.0006s0470 Capsella rubella HOM05D000876 ORTHO05D000285 2.1e-06 56.6 89 32.6
MELO3C035039.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.1e-06 56.6 71 38.0
Eucgr.B02958 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.1e-06 56.6 83 32.5
QL08p062543 Quercus lobata HOM05D000020 ORTHO05D007189 2.1e-06 56.6 91 33.0
A10p30570 Brassica napus HOM05D000876 ORTHO05D000285 2.7e-06 56.2 89 33.7
C09p71030 Brassica napus HOM05D000876 ORTHO05D000285 2.7e-06 56.2 89 33.7
BolC9t59867H Brassica oleracea HOM05D000876 ORTHO05D000285 2.7e-06 56.2 89 33.7
BraA10t45098Z Brassica rapa HOM05D000876 ORTHO05D000285 2.7e-06 56.2 89 33.7
Dinv32776 Davidia involucrata HOM05D007209 ORTHO05D000921 2.7e-06 56.2 94 34.0
Eucgr.C01733 Eucalyptus grandis HOM05D000665 ORTHO05D000285 2.7e-06 56.2 90 31.1
Glyma.11G078600 Glycine max HOM05D000665 ORTHO05D003147 3.5e-06 55.8 115 30.4
Phvul.002G106800 Phaseolus vulgaris HOM05D000665 ORTHO05D003147 3.5e-06 55.8 115 30.4
COL.COLO4_20107 Corchorus olitorius HOM05D007209 ORTHO05D000921 4.6e-06 55.5 107 33.6
Dinv07014 Davidia involucrata HOM05D000665 ORTHO05D000921 4.6e-06 55.5 93 34.4
Dinv43770 Davidia involucrata HOM05D000665 ORTHO05D000921 4.6e-06 55.5 93 34.4
MBI04_g27247_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000285 4.6e-06 55.5 92 37.0
QL07p023043 Quercus lobata HOM05D003171 ORTHO05D000921 4.6e-06 55.5 91 33.0
Sp6g37100 Schrenkiella parvula HOM05D000876 ORTHO05D000285 4.6e-06 55.5 89 33.7
Nn2g15290 Nelumbo nucifera HOM05D007209 ORTHO05D000921 6.0e-06 55.1 108 31.5
Psat0s2829g0240 Pisum sativum HOM05D011477 ORTHO05D000285 6.0e-06 55.1 96 32.3
HanXRQChr13g0396681 Helianthus annuus HOM05D000665 ORTHO05D000921 7.9e-06 54.7 78 33.3


User provided reference genes

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