Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00585 Nelumbo nucifera HOM05D007785 ORTHO05D008997 3.1e-38 161.4 85 100.0
TAR636G3686 Trochodendron aralioides HOM05D007785 ORTHO05D008997 6.0e-26 120.6 85 72.9
Nn6g33639 Nelumbo nucifera HOM05D007785 ORTHO05D008997 2.5e-24 115.2 74 79.7
TAR374G0344 Trochodendron aralioides HOM05D007785 ORTHO05D008997 2.8e-23 111.7 85 70.6
TAR375G1071 Trochodendron aralioides HOM05D007785 ORTHO05D008997 3.1e-22 108.2 74 77.0
Atru.chr5.15 Acer truncatum HOM05D007785 ORTHO05D008997 3.2e-19 98.2 85 60.0
CSS0006779 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 3.0e-17 91.7 82 54.9
Dinv28928 Davidia involucrata HOM05D007785 ORTHO05D008997 1.5e-16 89.4 84 60.7
Actinidia05806 Actinidia chinensis HOM05D007785 ORTHO05D008997 2.5e-16 88.6 83 55.4
CiPaw.13G020000 Carya illinoinensis HOM05D007785 ORTHO05D008997 2.5e-16 88.6 85 61.2
Aqoxy3G02467 Aquilegia oxysepala HOM05D007785 ORTHO05D008997 5.7e-16 87.4 81 59.3
QL04p025073 Quercus lobata HOM05D007785 ORTHO05D008997 9.7e-16 86.7 79 60.8
Potri.001G145066 Populus trichocarpa HOM05D007785 ORTHO05D008997 3.7e-15 84.7 85 56.5
Cc02_g26020 Coffea canephora HOM05D007785 ORTHO05D008997 1.8e-14 82.4 80 56.2
COL.COLO4_17092 Corchorus olitorius HOM05D012518 ORTHO05D008997 4.1e-14 81.3 85 55.3
MD07G1083000 Malus domestica HOM05D007785 ORTHO05D008997 4.1e-14 81.3 85 54.1
Thecc.03G232200 Theobroma cacao HOM05D012518 ORTHO05D008997 9.0e-14 80.1 81 58.0
Peaxi162Scf01144g00004 Petunia axillaris HOM05D007785 ORTHO05D008997 2.0e-13 79.0 84 51.2
Dinv43998 Davidia involucrata HOM05D007785 ORTHO05D008997 4.5e-13 77.8 68 60.3
MD02G1229100 Malus domestica HOM05D007785 ORTHO05D008997 7.7e-13 77.0 85 51.8
Haze_02930 Corylus avellana HOM05D007785 ORTHO05D008997 1.3e-12 76.3 77 57.1
Gohir.D08G179100 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.3e-12 76.3 74 59.5
Nitab4.5_0001476g0130 Nicotiana tabacum HOM05D007785 ORTHO05D008997 1.3e-12 76.3 85 51.8
Gohir.A13G011800 Gossypium hirsutum HOM05D007785 ORTHO05D008997 1.7e-12 75.9 81 55.6
Gohir.D13G012700 Gossypium hirsutum HOM05D007785 ORTHO05D008997 1.7e-12 75.9 81 55.6
Sabra01G0113200 Salix brachista HOM05D007785 ORTHO05D008997 1.7e-12 75.9 85 51.8
Sed0022240 Sechium edule HOM05D007785 ORTHO05D008997 1.7e-12 75.9 94 51.1
Hma1.2p1_0021F.1_g014470 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 2.9e-12 75.1 87 49.4
Hma1.2p1_0601F.1_g187290 Hydrangea macrophylla HOM05D007785 ORTHO05D008997 2.9e-12 75.1 85 54.1
Gohir.A08G158700 Gossypium hirsutum HOM05D012518 ORTHO05D008997 3.8e-12 74.7 74 60.8
CSS0013282 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 5.0e-12 74.3 82 52.4
Peaxi162Scf00901g00032 Petunia axillaris HOM05D007785 ORTHO05D008997 5.0e-12 74.3 85 49.4
MSTRG.17094 Avicennia marina HOM05D007785 ORTHO05D008997 6.5e-12 73.9 80 48.8
Oeu021958.1 Olea europaea HOM05D007785 ORTHO05D008997 6.5e-12 73.9 80 50.0
Gorai.013G013800 Gossypium raimondii HOM05D007785 ORTHO05D008997 8.5e-12 73.6 81 54.3
Gorai.004G187600 Gossypium raimondii HOM05D012518 ORTHO05D008997 1.1e-11 73.2 74 58.1
Ciclev10033202m.g Citrus clementina HOM05D007785 ORTHO05D008997 1.4e-11 72.8 85 49.4
Lalb_Chr05g0214041 Lupinus albus HOM05D007785 ORTHO05D008997 1.4e-11 72.8 73 50.7
Potri.003G089100 Populus trichocarpa HOM05D007785 ORTHO05D008997 1.9e-11 72.4 71 59.2
RcHm_v2.0_Chr1g0341401 Rosa chinensis HOM05D007785 ORTHO05D008997 2.5e-11 72.0 83 49.4
FvH4_7g07910 Fragaria vesca HOM05D007785 ORTHO05D008997 7.2e-11 70.5 85 48.2
FAN03G1138 Fragaria x ananassa HOM05D007785 ORTHO05D008997 7.2e-11 70.5 85 48.2
FAN06G1471 Fragaria x ananassa HOM05D007785 ORTHO05D008997 7.2e-11 70.5 85 48.2
FAN10G3075 Fragaria x ananassa HOM05D007785 ORTHO05D008997 7.2e-11 70.5 85 48.2
Lalb_Chr09g0329531 Lupinus albus HOM05D007785 ORTHO05D008997 9.4e-11 70.1 73 54.8
FAN01G0084 Fragaria x ananassa HOM05D007785 ORTHO05D008997 2.7e-10 68.6 85 47.1
Manes.15G169900 Manihot esculenta HOM05D007785 ORTHO05D008997 2.7e-10 68.6 77 53.2
Cc08_g02350 Coffea canephora HOM05D007785 ORTHO05D008997 4.6e-10 67.8 72 55.6
MELO3C006238.2 Cucumis melo HOM05D007785 ORTHO05D008997 4.6e-10 67.8 89 47.2
Solyc01g080890.2 Solanum lycopersicum HOM05D007785 ORTHO05D008997 4.6e-10 67.8 85 49.4
ClCG05G002700 Citrullus lanatus HOM05D007785 ORTHO05D008997 6.1e-10 67.4 89 46.1
Nitab4.5_0003887g0040 Nicotiana tabacum HOM05D007785 ORTHO05D008997 6.1e-10 67.4 69 56.5
CsaV3_3G010180 Cucumis sativus L. HOM05D007785 ORTHO05D008997 1.0e-09 66.6 89 46.1
MBI04_g22960_MAGBIO Magnolia biondii HOM05D007785 ORTHO05D008997 1.0e-09 66.6 59 61.0
SalBow4G1855 Salvia bowleyana HOM05D007785 ORTHO05D008997 1.0e-09 66.6 79 46.8
Medtr4g098710 Medicago truncatula HOM05D007785 ORTHO05D008997 1.4e-09 66.2 81 49.4
Hund11261 Selenicereus undatus HOM05D018059 ORTHO05D008997 1.4e-09 66.2 78 52.6
ATR0049G031 Amborella trichopoda HOM05D007785 ORTHO05D008997 1.8e-09 65.9 73 56.2
Glyma.01G199900 Glycine max HOM05D007785 ORTHO05D008997 1.8e-09 65.9 73 49.3
Glyma.11G042100 Glycine max HOM05D007785 ORTHO05D008997 2.3e-09 65.5 73 46.6
Rhsim01G0145700 Rhododendron simsii HOM05D007785 ORTHO05D008997 2.3e-09 65.5 76 52.6
Migut.B01462 Erythranthe guttata HOM05D007785 ORTHO05D008997 5.1e-09 64.3 81 45.7
Gohir.D09G192932 Gossypium hirsutum HOM05D012518 ORTHO05D008997 5.1e-09 64.3 85 51.8
Oeu024374.1 Olea europaea HOM05D007785 ORTHO05D008997 5.1e-09 64.3 73 46.6
Ca_22059_v3 Cicer arietinum L. HOM05D007785 ORTHO05D008997 6.7e-09 63.9 81 46.9
Gohir.D03G170000 Gossypium hirsutum HOM05D012518 ORTHO05D008997 6.7e-09 63.9 84 46.4
Gorai.003G180300 Gossypium raimondii HOM05D012518 ORTHO05D008997 6.7e-09 63.9 84 46.4
Sopen01g032480 Solanum pennellii HOM05D007785 ORTHO05D008997 6.7e-09 63.9 85 48.2
Phvul.002G005800 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 8.8e-09 63.5 73 47.9
CSS0022493 Camellia sinensis var. sinensis HOM05D007785 ORTHO05D008997 1.1e-08 63.2 71 54.9
Sed0016926 Sechium edule HOM05D007785 ORTHO05D008997 1.1e-08 63.2 95 44.2
Gohir.A03G002300 Gossypium hirsutum HOM05D012518 ORTHO05D008997 1.5e-08 62.8 84 45.2
PGSC0003DMG400001700 Solanum tuberosum HOM05D007785 ORTHO05D008997 1.5e-08 62.8 76 50.0
vmacro21104 Vaccinium macrocarpon HOM05D008336 ORTHO05D008997 1.5e-08 62.8 97 43.3
ECA234G3743 Erigeron canadensis HOM05D007785 ORTHO05D008997 2.5e-08 62.0 79 46.8
Glyma.17G153500 Glycine max HOM05D007785 ORTHO05D008997 2.5e-08 62.0 73 52.1
AUR62041587 Chenopodium quinoa HOM05D018059 ORTHO05D008997 3.3e-08 61.6 78 50.0
Gorai.006G216000 Gossypium raimondii HOM05D012518 ORTHO05D008997 3.3e-08 61.6 85 50.6
Nitab4.5_0006705g0010 Nicotiana tabacum HOM05D007785 ORTHO05D008997 3.3e-08 61.6 73 52.1
VMungo0251G2587 Vigna mungo HOM05D007785 ORTHO05D008997 3.3e-08 61.6 63 55.6
arahy.Tifrunner.gnm1.ann1.TXA0XA Arachis hypogaea HOM05D007785 ORTHO05D008997 4.3e-08 61.2 73 46.6
arahy.Tifrunner.gnm1.ann1.XHE4AQ Arachis hypogaea HOM05D007785 ORTHO05D008997 4.3e-08 61.2 73 46.6
Glyma.05G113700 Glycine max HOM05D007785 ORTHO05D008997 4.3e-08 61.2 73 52.1
Phvul.003G229200 Phaseolus vulgaris HOM05D007785 ORTHO05D008997 4.3e-08 61.2 73 49.3
Gohir.A09G198400 Gossypium hirsutum HOM05D012518 ORTHO05D008997 5.7e-08 60.8 85 50.6
Nitab4.5_0000166g0090 Nicotiana tabacum HOM05D007785 ORTHO05D008997 5.7e-08 60.8 73 52.1
Prupe.2G109900 Prunus persica HOM05D007785 ORTHO05D008997 1.3e-07 59.7 90 42.2
Migut.N01702 Erythranthe guttata HOM05D007785 ORTHO05D008997 2.2e-07 58.9 78 47.4
AUR62033093 Chenopodium quinoa HOM05D018059 ORTHO05D008997 2.8e-07 58.5 78 48.7
Psat4g078560 Pisum sativum HOM05D007785 ORTHO05D008997 2.8e-07 58.5 81 46.9
TPR.G28662 Trifolium pratense HOM05D007785 ORTHO05D008997 2.8e-07 58.5 83 45.8
DCAR_025013 Daucus carota HOM05D007785 ORTHO05D008997 3.7e-07 58.2 77 45.5
Ciclev10023085m.g Citrus clementina HOM05D007785 ORTHO05D008997 4.8e-07 57.8 72 47.2
Prupe.5G041600 Prunus persica HOM05D024839 ORTHO05D025594 4.8e-07 57.8 78 48.7
HanXRQChr16g0519261 Helianthus annuus HOM05D007785 ORTHO05D008997 6.3e-07 57.4 69 52.2
Lj4g0027032 Lotus japonicus HOM05D007785 ORTHO05D008997 1.1e-06 56.6 74 48.6
Os02g0690200 Oryza sativa ssp. japonica HOM05D057422 ORTHO05D296608 2.4e-06 55.5 68 50.0
Potri.014G179200 Populus trichocarpa HOM05D007785 ORTHO05D008997 2.4e-06 55.5 76 51.3
Sp1g28440 Schrenkiella parvula HOM05D010231 ORTHO05D012284 5.3e-06 54.3 74 48.6
HanXRQChr16g0520951 Helianthus annuus HOM05D007785 ORTHO05D008997 6.9e-06 53.9 70 48.6
BcaC05g27283 Brassica carinata HOM05D010231 ORTHO05D012284 9.1e-06 53.5 65 50.8
SalBow5G3019 Salvia bowleyana HOM05D007785 ORTHO05D008997 9.1e-06 53.5 83 42.2


User provided reference genes

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