Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00558 Nelumbo nucifera HOM05D001200 ORTHO05D009778 8.2e-46 186.8 102 100.0
Nn064s42210 Nelumbo nucifera HOM05D001200 ORTHO05D009778 8.0e-41 170.2 102 91.2
RcHm_v2.0_Chr5g0017211 Rosa chinensis HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 90.2
RcHm_v2.0_CPg0502771 Rosa chinensis HOM05D001200 ORTHO05D009778 4.0e-40 167.9 102 90.2
PGR111G0025 Punica granatum HOM05D001200 ORTHO05D009778 4.4e-39 164.5 102 89.2
RcHm_v2.0_Chr5g0043031 Rosa chinensis HOM05D001200 ORTHO05D009778 5.7e-39 164.1 100 89.0
Sed0017608 Sechium edule HOM05D000533 ORTHO05D006151 5.7e-39 164.1 102 86.3
Migut.D01252 Erythranthe guttata HOM05D001200 ORTHO05D009778 7.5e-39 163.7 102 86.3
Hma1.2p1_0656F.1_g196803 Hydrangea macrophylla HOM05D001200 ORTHO05D009778 9.7e-39 163.3 102 89.2
Lalb_Chr07g0191771 Lupinus albus HOM05D001200 ORTHO05D009778 1.3e-38 162.9 102 89.2
DCAR_032538 Daucus carota HOM05D001200 ORTHO05D009778 1.7e-38 162.5 102 87.3
Gohir.1Z049531 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 87.3
Gohir.A02G134500 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 87.3
Gohir.A04G053130 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 87.3
Gohir.A09G040995 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.2e-38 162.2 102 87.3
CAN.G1526.7 Capsicum annuum HOM05D001200 ORTHO05D009778 3.7e-38 161.4 102 87.3
CAN.G278.3 Capsicum annuum HOM05D001200 ORTHO05D009778 3.7e-38 161.4 102 87.3
PGSC0003DMG402011339 Solanum tuberosum HOM05D001200 ORTHO05D009778 3.7e-38 161.4 102 87.3
HanXRQChr00c0336g0573661 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-38 161.0 102 86.3
HanXRQChr05g0152441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-38 161.0 102 86.3
HanXRQChr09g0258511 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-38 161.0 102 86.3
HanXRQChr11g0323751 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-38 161.0 102 86.3
HanXRQChr15g0465441 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-38 161.0 102 86.3
HanXRQChr15g0465451 Helianthus annuus HOM05D001200 ORTHO05D009778 4.8e-38 161.0 102 86.3
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-38 160.6 101 86.1
HanXRQChr17g0569731 Helianthus annuus HOM05D001200 ORTHO05D009778 6.3e-38 160.6 101 86.1
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 6.3e-38 160.6 101 86.1
Medtr4g006110 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-37 159.8 102 87.3
Medtr5g063410 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-37 159.8 102 87.3
Medtr7g021710 Medicago truncatula HOM05D007371 ORTHO05D009319 1.1e-37 159.8 102 87.3
PSO548G0037 Papaver somniferum HOM05D001200 ORTHO05D009778 1.4e-37 159.5 102 85.3
arahy.Tifrunner.gnm1.ann1.4VL02K Arachis hypogaea HOM05D001200 ORTHO05D009778 4.1e-37 157.9 102 86.3
arahy.Tifrunner.gnm1.ann1.9I8ZI2 Arachis hypogaea HOM05D001200 ORTHO05D009778 4.1e-37 157.9 102 86.3
arahy.Tifrunner.gnm1.ann1.V71EA1 Arachis hypogaea HOM05D001200 ORTHO05D009778 4.1e-37 157.9 102 86.3
Nn1g08634 Nelumbo nucifera HOM05D001200 ORTHO05D009778 4.1e-37 157.9 102 87.3
HanXRQChr02g0040741 Helianthus annuus HOM05D001200 ORTHO05D009778 7.0e-37 157.1 102 84.3
HanXRQChr13g0393091 Helianthus annuus HOM05D001200 ORTHO05D009778 9.1e-37 156.8 102 84.3
Gohir.D04G175000 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.6e-36 156.0 102 84.3
C07p33450 Brassica napus HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
C09p40190 Brassica napus HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BolC2t10596H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BolSC35t60704H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BolSC37t60793H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BolSC44t60822H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BolSC46t60958H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BolSC47t61065H Brassica oleracea HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BraA10t43432Z Brassica rapa HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
BraSC59t46551Z Brassica rapa HOM05D001200 ORTHO05D009778 7.7e-36 153.7 102 82.4
AL9U11954 Arabidopsis lyrata HOM05D001200 ORTHO05D009778 1.0e-35 153.3 102 82.4
Lalb_Chr19g0127811 Lupinus albus HOM05D001200 ORTHO05D009778 1.3e-35 152.9 102 86.3
CAN.G965.6 Capsicum annuum HOM05D001200 ORTHO05D009778 2.9e-35 151.8 102 83.3
Gohir.A08G113700 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.9e-35 151.8 102 83.3
BolC9t56923H Brassica oleracea HOM05D001200 ORTHO05D009778 3.8e-35 151.4 102 81.4
ATCG01070 Arabidopsis thaliana HOM05D001200 ORTHO05D009778 5.0e-35 151.0 102 81.4
Manes.17G012600 Manihot esculenta HOM05D001200 ORTHO05D009778 5.0e-35 151.0 101 81.2
Gohir.D13G164800 Gossypium hirsutum HOM05D001200 ORTHO05D009778 1.5e-34 149.4 102 80.4
MBI10_g47590_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 5.5e-34 147.5 92 85.9
MBI10_g47593_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D002731 5.5e-34 147.5 92 85.9
BolC6t36203H Brassica oleracea HOM05D001200 ORTHO05D009778 1.2e-33 146.4 102 78.4
EL10As15g24099 Beta vulgaris HOM05D001200 ORTHO05D009778 2.3e-32 142.1 93 80.6
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 2.3e-32 142.1 93 80.6
SEGI_22361 Sequoiadendron giganteum HOM05D001200 ORTHO05D009778 4.0e-32 141.4 98 75.5
Gohir.A01G112200 Gossypium hirsutum HOM05D001200 ORTHO05D009778 2.6e-31 138.7 102 75.5
Nitab4.5_0001313g0070 Nicotiana tabacum HOM05D001200 ORTHO05D009778 3.7e-30 134.8 91 82.4
Nitab4.5_0007979g0060 Nicotiana tabacum HOM05D001200 ORTHO05D009778 1.4e-29 132.9 95 76.8
LjContig00318g0024402 Lotus japonicus HOM05D001200 ORTHO05D009778 3.5e-28 128.3 102 76.5
LjContig00319g0019579 Lotus japonicus HOM05D001200 ORTHO05D009778 3.5e-28 128.3 102 76.5
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 1.0e-27 126.7 82 82.9
CARHR282440 Cardamine hirsuta HOM05D001200 ORTHO05D009778 2.9e-27 125.2 95 73.7
Lj2g0021700 Lotus japonicus HOM05D001200 ORTHO05D009778 2.3e-24 115.5 102 71.6
HanXRQChr10g0289681 Helianthus annuus HOM05D001200 ORTHO05D009778 2.8e-22 108.6 102 66.7
HanXRQChr17g0569741 Helianthus annuus HOM05D001200 ORTHO05D009778 1.4e-21 106.3 66 81.8
HanXRQChr02g0038671 Helianthus annuus HOM05D001200 ORTHO05D009778 1.8e-21 105.9 66 81.8
HanXRQChr02g0038711 Helianthus annuus HOM05D001200 ORTHO05D009778 3.1e-21 105.1 63 84.1
HanXRQChr09g0246681 Helianthus annuus HOM05D001200 ORTHO05D009778 5.4e-21 104.4 101 65.3
BraSC103t45429Z Brassica rapa HOM05D001200 ORTHO05D009778 7.0e-21 104.0 67 77.6
HanXRQChr17g0557751 Helianthus annuus HOM05D001200 ORTHO05D009778 7.0e-21 104.0 66 80.3
BolSC45t60909H Brassica oleracea HOM05D001200 ORTHO05D009778 9.2e-21 103.6 65 80.0
C02p52240 Brassica napus HOM05D001200 ORTHO05D009778 1.6e-20 102.8 104 62.5
PGSC0003DMG400026713 Solanum tuberosum HOM05D001200 ORTHO05D009778 2.9e-19 98.6 74 75.7
Nn3g19076 Nelumbo nucifera HOM05D001200 ORTHO05D009778 5.0e-19 97.8 76 77.6
arahy.Tifrunner.gnm1.ann1.DP5I98 Arachis hypogaea HOM05D001200 ORTHO05D009778 1.1e-18 96.7 75 74.7
Glyma.18G155400 Glycine max HOM05D001200 ORTHO05D009778 1.1e-18 96.7 76 73.7
BolSC29t60506H Brassica oleracea HOM05D001200 ORTHO05D009778 4.3e-18 94.7 67 74.6
BraSC179t45774Z Brassica rapa HOM05D001200 ORTHO05D009778 7.3e-18 94.0 59 78.0
Nn3g20216 Nelumbo nucifera HOM05D001200 ORTHO05D009778 2.1e-17 92.4 56 87.5
HanXRQChr01g0000241 Helianthus annuus HOM05D001200 ORTHO05D009778 8.0e-17 90.5 58 77.6
Glyma.08G367600 Glycine max HOM05D001200 ORTHO05D009778 1.8e-16 89.4 96 61.5
TPR.G17270 Trifolium pratense HOM05D001200 ORTHO05D009778 2.3e-16 89.0 62 80.6
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 1.2e-15 86.7 73 64.4
HanXRQChr08g0231311 Helianthus annuus HOM05D001200 ORTHO05D009778 3.4e-15 85.1 59 79.7
C09p24640 Brassica napus HOM05D001200 ORTHO05D009778 7.5e-15 84.0 52 80.8
BolSC29t60546H Brassica oleracea HOM05D001200 ORTHO05D009778 7.5e-15 84.0 52 80.8
BolSC35t60692H Brassica oleracea HOM05D001200 ORTHO05D009778 2.9e-14 82.0 51 80.4
Phvul.011G095700 Phaseolus vulgaris HOM05D001200 ORTHO05D009778 4.9e-14 81.3 77 64.9
Lsat_1_v5_gn_6_54101 Lactuca sativa HOM05D001200 ORTHO05D009778 6.4e-14 80.9 75 65.3
BolSC49t61143H Brassica oleracea HOM05D001200 ORTHO05D009778 1.8e-13 79.3 53 79.2
BraSC143t45660Z Brassica rapa HOM05D001200 ORTHO05D009778 3.2e-13 78.6 51 78.4
Eucgr.L00013 Eucalyptus grandis HOM05D001200 ORTHO05D009778 9.2e-13 77.0 102 53.9
Lsat_1_v5_gn_1_14180 Lactuca sativa HOM05D001200 ORTHO05D009713 7.8e-12 73.9 48 87.5
SMO086G0019 Selaginella moellendorffii HOM05D001200 ORTHO05D009778 8.6e-11 70.5 100 46.0
MBI16_g21734_MAGBIO Magnolia biondii HOM05D001200 ORTHO05D009778 1.9e-10 69.3 50 74.0
Oeu019750.1 Olea europaea HOM05D001200 ORTHO05D009778 8.0e-09 63.9 47 66.0
BraSC25t45910Z Brassica rapa HOM05D001200 ORTHO05D009778 8.9e-08 60.5 41 75.6
A05p21340 Brassica napus HOM05D000001 ORTHO05D024436 1.3e-06 56.6 32 78.1
C05p35930 Brassica napus HOM05D000001 ORTHO05D024436 6.4e-06 54.3 32 75.0


User provided reference genes

Program Settings