Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00556 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.3e-30 135.6 62 100.0
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.5e-29 129.4 61 96.7
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 8.6e-22 106.3 60 78.3
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 2.5e-21 104.8 60 76.7
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 2.5e-21 104.8 60 76.7
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 2.5e-21 104.8 60 76.7
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 2.5e-21 104.8 60 76.7
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 4.3e-21 104.0 60 76.7
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-20 101.3 60 75.0
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 8.0e-20 99.8 61 75.4
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 1.0e-19 99.4 61 73.8
HanXRQChr05g0152391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.0e-19 99.4 61 73.8
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 1.0e-19 99.4 61 73.8
HanXRQChr11g0323701 Helianthus annuus HOM05D001750 ORTHO05D001825 1.0e-19 99.4 61 73.8
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.0e-19 99.4 61 73.8
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 1.8e-19 98.6 60 76.7
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.8e-19 96.7 60 73.3
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.8e-19 96.7 60 73.3
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.8e-19 96.7 60 73.3
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 1.2e-18 95.9 59 74.6
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.4e-18 94.4 59 72.9
HanXRQChr01g0020111 Helianthus annuus HOM05D001750 ORTHO05D001825 1.3e-17 92.4 58 72.4
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 4.9e-17 90.5 60 66.7
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 8.3e-17 89.7 60 70.0
EL10Ac5g11664 Beta vulgaris HOM05D001750 ORTHO05D001825 2.0e-15 85.1 60 61.7
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 2.0e-15 85.1 60 61.7
Gohir.A12G084295 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.6e-15 84.0 60 66.7
Gohir.A08G055950 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.1e-13 79.3 54 68.5
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.9e-13 78.6 62 62.9
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 3.3e-13 77.8 59 55.9
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 3.3e-13 77.8 59 55.9
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 3.3e-13 77.8 59 55.9
Gohir.A04G058952 Gossypium hirsutum HOM05D001750 ORTHO05D001825 5.6e-13 77.0 54 66.7
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 9.5e-13 76.3 59 54.2
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 1.2e-12 75.9 59 55.9
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.8e-11 72.0 60 56.7
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.8e-11 72.0 60 56.7
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.3e-11 71.6 49 67.3
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 2.3e-11 71.6 60 58.3
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.5e-10 68.9 60 50.0
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.5e-10 68.9 60 50.0
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.0e-10 68.6 48 66.7
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 8.3e-09 63.2 60 46.7
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 1.4e-08 62.4 57 50.9
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.1e-08 60.8 37 73.0
Solyc05g013080.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 9.2e-08 59.7 39 64.1
Solyc11g044643.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-07 58.9 35 74.3
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.8e-07 56.6 55 47.3
arahy.Tifrunner.gnm1.ann1.X5PJ61 Arachis hypogaea HOM05D000445 ORTHO05D000314 5.1e-06 53.9 46 47.8
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 6.6e-06 53.5 38 63.2


User provided reference genes

Program Settings