Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 7.2e-231 803.5 394 100.0
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 5.7e-204 714.1 438 82.2
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.7e-195 684.9 438 77.9
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 7.3e-191 670.6 436 75.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.0e-189 666.8 457 74.4
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.0e-189 666.8 442 76.0
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.4e-189 666.4 438 75.8
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 6.8e-189 664.1 438 75.8
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 8.9e-189 663.7 436 76.6
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.0e-188 662.5 438 74.0
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.2e-187 659.1 436 74.5
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 2.4e-186 655.6 439 74.0
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 3.2e-186 655.2 436 73.9
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 7.0e-186 654.1 437 73.7
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.2e-185 653.3 438 73.5
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.0e-185 652.5 436 74.3
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.5e-185 651.7 438 73.7
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.9e-185 651.0 433 74.6
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 7.8e-185 650.6 438 73.7
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 7.8e-185 650.6 441 73.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.0e-184 647.9 436 73.9
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 6.6e-184 647.5 436 72.7
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 6.6e-184 647.5 438 73.3
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 8.6e-184 647.1 436 73.9
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.5e-183 646.4 436 73.9
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.5e-183 646.4 438 72.6
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 2.5e-183 645.6 439 73.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.3e-183 644.8 436 73.2
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 5.6e-183 644.4 438 73.3
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 5.6e-183 644.4 438 73.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 7.3e-183 644.0 433 73.0
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.2e-182 643.3 436 73.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.6e-182 642.9 429 73.9
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 2.1e-182 642.5 434 72.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-182 642.1 433 73.4
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.8e-182 642.1 433 73.4
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.8e-182 642.1 433 73.2
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.8e-182 642.1 435 73.3
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 3.6e-182 641.7 438 72.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 4.7e-182 641.3 436 72.2
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.7e-182 641.3 438 73.1
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 6.2e-182 641.0 436 72.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.0e-181 640.2 433 73.2
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.8e-181 639.4 493 66.7
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 2.3e-181 639.0 429 72.5
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 2.3e-181 639.0 429 72.5
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 3.1e-181 638.6 433 73.9
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 6.8e-181 637.5 438 72.8
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 6.8e-181 637.5 433 73.0
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 8.9e-181 637.1 429 72.5
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 1.2e-180 636.7 438 72.1
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.0e-180 636.0 433 72.7
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.4e-180 635.2 438 72.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 5.8e-180 634.4 438 71.2
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 5.8e-180 634.4 436 72.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.8e-180 634.4 436 71.3
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 7.5e-180 634.0 433 72.7
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-179 633.3 436 72.0
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.3e-179 633.3 436 72.0
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.7e-179 632.9 438 71.9
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.2e-179 632.5 429 71.8
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.9e-179 632.1 436 72.2
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.7e-179 631.7 437 71.2
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 3.7e-179 631.7 432 70.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 3.7e-179 631.7 438 71.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.4e-179 630.9 447 70.7
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 1.1e-178 630.2 435 72.0
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 1.1e-178 630.2 428 72.7
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.4e-178 629.8 431 70.8
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 1.9e-178 629.4 428 72.9
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 2.4e-178 629.0 436 71.3
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 7.0e-178 627.5 430 71.4
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 9.2e-178 627.1 428 72.4
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 3.5e-177 625.2 428 72.0
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.5e-177 625.2 435 71.3
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.0e-177 624.4 436 69.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 7.8e-177 624.0 435 71.0
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 3.0e-176 622.1 432 72.2
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 5.0e-176 621.3 509 64.4
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 8.6e-176 620.5 429 71.8
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 9.5e-175 617.1 443 70.0
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 1.6e-174 616.3 471 66.0
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 2.0e-172 609.4 436 68.1
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.4e-170 602.4 418 72.0
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 5.4e-170 601.3 524 60.9
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.5e-169 598.6 414 72.5
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 4.6e-169 598.2 433 68.6
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.9e-167 592.8 427 69.6
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.1e-165 587.0 440 65.9
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 5.2e-165 584.7 434 67.5
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.0e-164 582.8 434 67.1
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 3.4e-164 582.0 393 74.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.4e-162 576.6 410 70.7
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.2e-161 573.5 426 67.8
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 2.1e-161 572.8 427 66.0
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.1e-161 572.8 440 63.6
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.7e-161 572.4 405 70.4
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.3e-160 570.1 427 67.4
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.7e-160 569.7 433 66.5
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 8.6e-160 567.4 401 70.3
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.7e-158 561.6 437 64.3
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.2e-157 558.1 435 64.1
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.1e-154 550.4 437 62.7
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 2.1e-150 536.2 427 63.0
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.8e-150 535.8 418 61.5
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.0e-149 530.8 435 59.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.2e-148 530.4 322 80.1
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 6.4e-147 524.6 328 78.4
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 3.2e-146 522.3 436 58.3
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.8e-142 509.2 435 58.9
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.1e-141 507.3 428 62.6
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.1e-141 507.3 318 78.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 7.9e-137 491.1 342 71.9
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 8.7e-136 487.6 339 71.1
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 5.6e-135 485.0 382 64.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.3e-131 473.8 426 54.7
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.5e-130 468.4 440 54.5
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.6e-129 466.8 440 54.3
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 4.8e-126 455.3 442 54.1
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 6.9e-125 451.4 270 81.5
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 6.5e-115 418.3 354 59.9
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.9e-114 416.8 427 51.5
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 6.7e-112 408.3 337 61.7
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.1e-109 399.4 355 59.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 8.5e-107 391.3 432 47.0
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.0e-104 384.4 314 62.7
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 2.4e-93 346.7 236 72.9
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 4.1e-93 345.9 224 75.9
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.9e-70 269.2 240 57.1
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.4e-63 246.5 189 64.6
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 6.4e-62 242.3 144 79.9
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-58 231.5 134 81.3
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.7e-57 226.1 130 84.6
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.1e-53 214.9 112 86.6
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 7.1e-53 212.2 176 61.9
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.8e-52 208.8 229 53.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.2e-41 174.9 139 64.7
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-35 154.5 88 81.8
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.6e-33 146.7 183 42.6
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.1e-32 145.2 82 85.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 2.4e-32 144.1 80 82.5
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-30 137.9 113 62.8
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.2e-30 137.5 82 81.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.3e-26 123.6 84 73.8
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.1e-25 120.9 221 37.6
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-24 118.6 139 50.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.3e-19 101.7 57 75.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 4.8e-17 93.2 66 60.6
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 6.5e-14 82.8 44 84.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 8.4e-14 82.4 105 44.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 1.8e-11 74.7 36 83.3
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 5.1e-11 73.2 38 78.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.1e-08 65.5 46 65.2
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 2.4e-08 64.3 48 54.2
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 2.4e-08 64.3 57 61.4
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.4e-07 60.5 36 69.4
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 2.9e-06 57.4 35 71.4


User provided reference genes

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