Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00510 Nelumbo nucifera HOM05D000187 ORTHO05D000230 2.2e-37 158.3 73 100.0
Nn3g21963 Nelumbo nucifera HOM05D000187 ORTHO05D000230 1.4e-15 85.9 39 97.4
Nn4g23961 Nelumbo nucifera HOM05D000187 ORTHO05D000230 7.8e-14 80.1 39 89.7
Nn3g17958 Nelumbo nucifera HOM05D000187 ORTHO05D000230 5.0e-13 77.4 39 87.2
MBI09_g25153_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000230 1.9e-12 75.5 39 84.6
Actinidia18917 Actinidia chinensis HOM05D000187 ORTHO05D000230 5.6e-12 73.9 38 84.2
TAR535G0001 Trochodendron aralioides HOM05D000187 ORTHO05D000230 7.3e-12 73.6 52 63.5
TAR629G3526 Trochodendron aralioides HOM05D000187 ORTHO05D000230 7.3e-12 73.6 52 63.5
CSS0000068 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 9.5e-12 73.2 46 73.9
TAR622G0266 Trochodendron aralioides HOM05D000187 ORTHO05D000230 9.5e-12 73.2 38 84.2
HanXRQChr17g0559771 Helianthus annuus HOM05D000187 ORTHO05D000230 1.2e-11 72.8 50 64.0
GSVIVG01011840001 Vitis vinifera HOM05D000187 ORTHO05D000230 1.2e-11 72.8 45 68.9
PGR083G2722 Punica granatum HOM05D000187 ORTHO05D000230 1.6e-11 72.4 64 51.6
Actinidia35102 Actinidia chinensis HOM05D000187 ORTHO05D000230 2.1e-11 72.0 38 81.6
CSS0006855 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 2.1e-11 72.0 46 71.7
Ciclev10020624m.g Citrus clementina HOM05D000187 ORTHO05D000230 2.8e-11 71.6 53 62.3
Dinv16139 Davidia involucrata HOM05D000187 ORTHO05D000230 2.8e-11 71.6 40 77.5
vmacro17698 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 2.8e-11 71.6 38 81.6
Zm00001eb156060 Zea mays HOM05D000187 ORTHO05D000230 2.8e-11 71.6 42 78.6
Cc04_g06840 Coffea canephora HOM05D000187 ORTHO05D000230 3.6e-11 71.2 43 67.4
Duzib084G0101 Durio zibethinus HOM05D000187 ORTHO05D000230 3.6e-11 71.2 39 76.9
Dinv12227 Davidia involucrata HOM05D000187 ORTHO05D000230 4.7e-11 70.9 38 78.9
RcHm_v2.0_Chr7g0179401 Rosa chinensis HOM05D000187 ORTHO05D000230 4.7e-11 70.9 39 79.5
Sc04g0003340 Simmondsia chinensis HOM05D000187 ORTHO05D000230 4.7e-11 70.9 54 59.3
PGSC0003DMG400005742 Solanum tuberosum HOM05D000187 ORTHO05D000230 4.7e-11 70.9 38 81.6
Lsat_1_v5_gn_8_142020 Lactuca sativa HOM05D000187 ORTHO05D000230 6.1e-11 70.5 43 72.1
Zm00001eb360710 Zea mays HOM05D000187 ORTHO05D000230 6.1e-11 70.5 44 77.3
Eucgr.B00829 Eucalyptus grandis HOM05D000187 ORTHO05D000230 8.0e-11 70.1 39 71.8
Hma1.2p1_1614F.1_g293660 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 8.0e-11 70.1 38 81.6
Hma1.2p1_2594F.1_g325080 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 8.0e-11 70.1 38 81.6
Aqoxy3G00194 Aquilegia oxysepala HOM05D000187 ORTHO05D000230 1.0e-10 69.7 38 81.6
Solyc03g118840.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 1.0e-10 69.7 38 78.9
Sopen03g037790 Solanum pennellii HOM05D000187 ORTHO05D000230 1.0e-10 69.7 38 78.9
TAR374G1571 Trochodendron aralioides HOM05D000187 ORTHO05D000230 1.0e-10 69.7 38 81.6
Dinv17509 Davidia involucrata HOM05D000187 ORTHO05D000230 1.4e-10 69.3 38 81.6
Duzib068G0915 Durio zibethinus HOM05D000187 ORTHO05D000230 1.4e-10 69.3 39 74.4
Duzib205G0431 Durio zibethinus HOM05D000187 ORTHO05D000230 1.4e-10 69.3 39 74.4
MD14G1230200 Malus domestica HOM05D000187 ORTHO05D000230 1.4e-10 69.3 43 67.4
Thecc.03G042900 Theobroma cacao HOM05D000187 ORTHO05D000230 1.4e-10 69.3 39 74.4
Atru.chr9.914 Acer truncatum HOM05D000187 ORTHO05D000230 1.8e-10 68.9 38 78.9
Cpa.g.sc3.460 Carica papaya HOM05D000187 ORTHO05D000230 1.8e-10 68.9 38 76.3
COL.COLO4_38530 Corchorus olitorius HOM05D000187 ORTHO05D000230 1.8e-10 68.9 39 74.4
Ah.11g045140 Amaranthus hybridus HOM05D000187 ORTHO05D000230 3.1e-10 68.2 38 78.9
CiPaw.16G089300 Carya illinoinensis HOM05D000187 ORTHO05D000230 3.1e-10 68.2 43 69.8
MD06G1220700 Malus domestica HOM05D000187 ORTHO05D000230 3.1e-10 68.2 42 69.0
Oeu000988.1 Olea europaea HOM05D000187 ORTHO05D000230 3.1e-10 68.2 52 59.6
GSVIVG01008343001 Vitis vinifera HOM05D000187 ORTHO05D000230 3.1e-10 68.2 38 78.9
Lj5A153T49 Lonicera japonica HOM05D000187 ORTHO05D000230 5.2e-10 67.4 37 81.1
Hund02352 Selenicereus undatus HOM05D000187 ORTHO05D000230 5.2e-10 67.4 38 78.9
TAR374G0613 Trochodendron aralioides HOM05D000187 ORTHO05D000230 5.2e-10 67.4 38 78.9
Gohir.A07G059400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 6.8e-10 67.0 39 71.8
Gohir.D07G064200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 6.8e-10 67.0 39 71.8
Gorai.001G067700 Gossypium raimondii HOM05D000187 ORTHO05D000230 6.8e-10 67.0 39 71.8
Sabra12G0037600 Salix brachista HOM05D000187 ORTHO05D000230 6.8e-10 67.0 40 67.5
TWI81G0466 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 6.8e-10 67.0 42 69.0
CSS0003605 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 8.9e-10 66.6 40 72.5
CSS0026987 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 8.9e-10 66.6 40 72.5
Oeu017512.1 Olea europaea HOM05D000187 ORTHO05D000230 8.9e-10 66.6 52 57.7
Potri.012G053800 Populus trichocarpa HOM05D000187 ORTHO05D000230 8.9e-10 66.6 40 65.0
Rhsim08G0130100 Rhododendron simsii HOM05D000187 ORTHO05D000230 8.9e-10 66.6 38 76.3
Rhsim08G0130200 Rhododendron simsii HOM05D000187 ORTHO05D000230 8.9e-10 66.6 38 76.3
Potri.015G043900 Populus trichocarpa HOM05D000187 ORTHO05D000230 1.2e-09 66.2 40 65.0
Cfa019728 Carpinus fangiana HOM05D000187 ORTHO05D000230 1.5e-09 65.9 42 71.4
HanXRQChr17g0559791 Helianthus annuus HOM05D000187 ORTHO05D000230 2.0e-09 65.5 43 65.1
Rhsim12G0141500 Rhododendron simsii HOM05D000187 ORTHO05D000230 2.0e-09 65.5 38 73.7
Dinv31593 Davidia involucrata HOM05D000187 ORTHO05D000230 2.6e-09 65.1 38 73.7
Haze_18740 Corylus avellana HOM05D000187 ORTHO05D000230 3.4e-09 64.7 42 71.4
vmacro16433 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 3.4e-09 64.7 38 71.1
arahy.Tifrunner.gnm1.ann1.UBBI2A Arachis hypogaea HOM05D000187 ORTHO05D000230 4.4e-09 64.3 39 69.2
arahy.Tifrunner.gnm1.ann1.X8S18P Arachis hypogaea HOM05D000187 ORTHO05D000230 4.4e-09 64.3 39 69.2
CiPaw.15G135800 Carya illinoinensis HOM05D000187 ORTHO05D000230 4.4e-09 64.3 43 65.1
Gohir.A09G050000 Gossypium hirsutum HOM05D000187 ORTHO05D000230 4.4e-09 64.3 39 66.7
Gorai.006G058500 Gossypium raimondii HOM05D000187 ORTHO05D000230 4.4e-09 64.3 39 66.7
Phvul.002G325200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 4.4e-09 64.3 44 61.4
Sp1g16030 Schrenkiella parvula HOM05D000187 ORTHO05D000230 4.4e-09 64.3 40 70.0
SGA_v2.0_scaffold170G38804 Striga asiatica HOM05D000187 ORTHO05D000230 4.4e-09 64.3 41 65.9
THA.LOC104812152 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 4.4e-09 64.3 38 73.7
A08p30610 Brassica napus HOM05D000187 ORTHO05D000230 5.8e-09 63.9 39 71.8
C08p18300 Brassica napus HOM05D000187 ORTHO05D000230 5.8e-09 63.9 39 71.8
BolC8t49464H Brassica oleracea HOM05D000187 ORTHO05D000230 5.8e-09 63.9 39 71.8
BraA08t34992Z Brassica rapa HOM05D000187 ORTHO05D000230 5.8e-09 63.9 39 71.8
Prupe.5G225100 Prunus persica HOM05D000187 ORTHO05D000230 5.8e-09 63.9 39 71.8
TWI60G1712 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 5.8e-09 63.9 43 62.8
ECA233G0920 Erigeron canadensis HOM05D000187 ORTHO05D000230 7.5e-09 63.5 43 62.8
Glyma.05G241900 Glycine max HOM05D000187 ORTHO05D000230 7.5e-09 63.5 44 61.4
Glyma.08G049400 Glycine max HOM05D000187 ORTHO05D000230 7.5e-09 63.5 44 61.4
VMungo0251G2579 Vigna mungo HOM05D000187 ORTHO05D000230 7.5e-09 63.5 44 61.4
Lalb_Chr24g0397961 Lupinus albus HOM05D000187 ORTHO05D000230 9.8e-09 63.2 39 74.4
Sed0018606 Sechium edule HOM05D000187 ORTHO05D000230 9.8e-09 63.2 42 64.3
MSTRG.9274 Avicennia marina HOM05D000187 ORTHO05D000230 1.3e-08 62.8 37 73.0
EL10Ac5g11483 Beta vulgaris HOM05D000187 ORTHO05D000230 1.3e-08 62.8 38 73.7
Psat1g035040 Pisum sativum HOM05D000187 ORTHO05D000230 1.3e-08 62.8 39 66.7
HPP92_008042 Vanilla planifolia HOM05D000187 ORTHO05D000230 1.3e-08 62.8 57 57.9
FvH4_5g16700 Fragaria vesca HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 66.7
FAN04G1576 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 66.7
FAN08G2200 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 66.7
FAN13G0080 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 66.7
FAN18G3138 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 66.7
Gohir.D09G051200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 64.1
Lj2g0003886 Lotus japonicus HOM05D000187 ORTHO05D000230 1.7e-08 62.4 39 69.2
Zm00001eb294850 Zea mays HOM05D000187 ORTHO05D000230 1.7e-08 62.4 37 75.7
ClCG04G010890 Citrullus lanatus HOM05D000187 ORTHO05D000230 2.2e-08 62.0 38 71.1
MELO3C002110.2 Cucumis melo HOM05D000187 ORTHO05D000230 2.2e-08 62.0 38 71.1
Lalb_Chr14g0370951 Lupinus albus HOM05D000187 ORTHO05D000230 2.2e-08 62.0 34 76.5
Manes.05G133100 Manihot esculenta HOM05D000187 ORTHO05D000230 2.2e-08 62.0 39 64.1
VMungo0464G0328 Vigna mungo HOM05D000187 ORTHO05D000230 2.2e-08 62.0 39 66.7
Glyma.09G180300 Glycine max HOM05D000187 ORTHO05D000230 2.9e-08 61.6 39 69.2
Manes.01G015300 Manihot esculenta HOM05D000187 ORTHO05D000230 2.9e-08 61.6 39 61.5
PSO017G0577 Papaver somniferum HOM05D000187 ORTHO05D000230 2.9e-08 61.6 37 78.4
PSO478G0597 Papaver somniferum HOM05D000187 ORTHO05D000230 2.9e-08 61.6 37 78.4
Thhalv10007935m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 3.7e-08 61.2 39 66.7
Lalb_Chr16g0387321 Lupinus albus HOM05D000187 ORTHO05D000230 3.7e-08 61.2 38 68.4
Medtr6g082620 Medicago truncatula HOM05D000187 ORTHO05D000230 3.7e-08 61.2 39 66.7
CDE08G0213 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 4.9e-08 60.8 40 65.0
CsaV3_1G006940 Cucumis sativus L. HOM05D000187 ORTHO05D000230 4.9e-08 60.8 38 68.4
Medtr8g106240 Medicago truncatula HOM05D000187 ORTHO05D000230 4.9e-08 60.8 38 71.1
Phvul.004G153501 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 4.9e-08 60.8 39 64.1
QL10p026760 Quercus lobata HOM05D000187 ORTHO05D000230 4.9e-08 60.8 42 64.3
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 4.9e-08 60.8 39 69.2
TPR.G12745 Trifolium pratense HOM05D000187 ORTHO05D000230 6.4e-08 60.5 32 81.2
AUR62029913 Chenopodium quinoa HOM05D000187 ORTHO05D000230 8.3e-08 60.1 37 73.0
AUR62033794 Chenopodium quinoa HOM05D000187 ORTHO05D000230 8.3e-08 60.1 37 73.0
Glyma.07G097700 Glycine max HOM05D000187 ORTHO05D000230 8.3e-08 60.1 39 66.7
Carub.0001s1767 Capsella rubella HOM05D000187 ORTHO05D000230 1.1e-07 59.7 38 68.4
Migut.D01604 Erythranthe guttata HOM05D000187 ORTHO05D000230 1.1e-07 59.7 37 73.0
Migut.E00374 Erythranthe guttata HOM05D000187 ORTHO05D000230 1.1e-07 59.7 48 52.1
TPR.G28409 Trifolium pratense HOM05D000187 ORTHO05D000230 1.1e-07 59.7 39 64.1
CARHR066830 Cardamine hirsuta HOM05D000187 ORTHO05D000230 1.4e-07 59.3 47 63.8
Nitab4.5_0001456g0140 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.4e-07 59.3 42 69.0
unitig_699.g19523 Utricularia gibba HOM05D000187 ORTHO05D000230 1.4e-07 59.3 37 70.3
SEGI_05883 Sequoiadendron giganteum HOM05D000187 ORTHO05D000230 1.9e-07 58.9 37 67.6
SEGI_36205 Sequoiadendron giganteum HOM05D000187 ORTHO05D000230 1.9e-07 58.9 37 67.6
Sopen12g019840 Solanum pennellii HOM05D000187 ORTHO05D000230 1.9e-07 58.9 49 53.1
CARHR018580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 2.4e-07 58.5 38 68.4
CDE02G2914 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 2.4e-07 58.5 40 60.0
Os05g0550000 Oryza sativa ssp. japonica HOM05D000187 ORTHO05D000230 2.4e-07 58.5 37 70.3
Aa31LG7G3050 Aethionema arabicum HOM05D000187 ORTHO05D000230 3.2e-07 58.2 37 67.6
Carub.0002s2051 Capsella rubella HOM05D000187 ORTHO05D000230 3.2e-07 58.2 38 68.4
Sed0023942 Sechium edule HOM05D000187 ORTHO05D000230 3.2e-07 58.2 38 65.8
AL1G30330 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 4.1e-07 57.8 39 64.1
BcaB03g15081 Brassica carinata HOM05D000187 ORTHO05D000230 4.1e-07 57.8 47 61.7
MSTRG.13557 Avicennia marina HOM05D000187 ORTHO05D000230 5.4e-07 57.4 46 56.5
Solyc12g040390.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 5.4e-07 57.4 37 64.9
Sopen12g020000 Solanum pennellii HOM05D000187 ORTHO05D000230 5.4e-07 57.4 37 64.9
Ca_20703_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 9.2e-07 56.6 32 75.0
Ca_29812_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 9.2e-07 56.6 32 75.0
unitig_27.g25257 Utricularia gibba HOM05D000187 ORTHO05D000230 9.2e-07 56.6 37 62.2
AL2G33570 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 1.2e-06 56.2 38 65.8
Thhalv10018747m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 1.2e-06 56.2 47 59.6
Sabra15G0041500 Salix brachista HOM05D000187 ORTHO05D000230 1.2e-06 56.2 58 46.6
Solyc05g008840.2 Solanum lycopersicum HOM05D000187 ORTHO05D000230 1.2e-06 56.2 40 60.0
Sopen05g004600 Solanum pennellii HOM05D000187 ORTHO05D000230 1.2e-06 56.2 40 60.0
PGSC0003DMG400030571 Solanum tuberosum HOM05D000187 ORTHO05D000230 1.2e-06 56.2 40 60.0
Aa31LG4G4090 Aethionema arabicum HOM05D000187 ORTHO05D000230 1.6e-06 55.8 36 66.7
A07p39620 Brassica napus HOM05D000187 ORTHO05D000230 1.6e-06 55.8 38 65.8
C06p47910 Brassica napus HOM05D000187 ORTHO05D000230 1.6e-06 55.8 38 65.8
BolC6t39826H Brassica oleracea HOM05D000187 ORTHO05D000230 1.6e-06 55.8 38 65.8
BraA07t31511Z Brassica rapa HOM05D000187 ORTHO05D000230 1.6e-06 55.8 38 65.8
CDE06G1804 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 1.6e-06 55.8 41 61.0
Lsat_1_v5_gn_8_42581 Lactuca sativa HOM05D000187 ORTHO05D000230 1.6e-06 55.8 50 46.0
arahy.Tifrunner.gnm1.ann1.35GK0Y Arachis hypogaea HOM05D000187 ORTHO05D000230 2.0e-06 55.5 37 67.6
arahy.Tifrunner.gnm1.ann1.P10SDX Arachis hypogaea HOM05D000187 ORTHO05D000230 2.0e-06 55.5 37 67.6
PGR119G2109 Punica granatum HOM05D000187 ORTHO05D000230 2.7e-06 55.1 38 57.9
TAR628G0833 Trochodendron aralioides HOM05D000187 ORTHO05D000230 2.7e-06 55.1 37 67.6
Nitab4.5_0000694g0110 Nicotiana tabacum HOM05D000187 ORTHO05D000230 3.5e-06 54.7 40 57.5
Nitab4.5_0002112g0110 Nicotiana tabacum HOM05D000187 ORTHO05D000230 3.5e-06 54.7 40 57.5
Cpa.g.sc45.53 Carica papaya HOM05D000187 ORTHO05D005916 4.6e-06 54.3 35 71.4
CDE12G0243 Ceratophyllum demersum HOM05D000187 ORTHO05D000230 4.6e-06 54.3 41 61.0
Sc20g0005150 Simmondsia chinensis HOM05D000187 ORTHO05D005916 4.6e-06 54.3 38 65.8
Gohir.D09G146500 Gossypium hirsutum HOM05D000187 ORTHO05D005916 6.0e-06 53.9 35 71.4
Gorai.006G167700 Gossypium raimondii HOM05D000187 ORTHO05D005916 6.0e-06 53.9 35 71.4
Duzib106G1386 Durio zibethinus HOM05D000187 ORTHO05D005916 7.8e-06 53.5 37 67.6
ECA233G2852 Erigeron canadensis HOM05D000033 ORTHO05D001688 7.8e-06 53.5 40 52.5
Glyma.03G179300 Glycine max HOM05D000187 ORTHO05D005916 7.8e-06 53.5 35 65.7
HanXRQChr08g0213251 Helianthus annuus HOM05D000187 ORTHO05D000230 7.8e-06 53.5 40 52.5
Lj4g0024779 Lotus japonicus HOM05D000187 ORTHO05D000230 7.8e-06 53.5 38 63.2


User provided reference genes

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