Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00473 Nelumbo nucifera HOM05D001667 ORTHO05D001508 6.2e-59 230.7 128 100.0
Lalb_Chr21g0315971 Lupinus albus HOM05D001667 ORTHO05D001508 2.2e-08 62.8 88 39.8
MBI04_g38989_MAGBIO Magnolia biondii HOM05D067028 ORTHO05D048556 2.2e-08 62.8 53 56.6
SGA_v2.0_scaffold184G39999 Striga asiatica HOM05D001667 ORTHO05D001508 2.2e-08 62.8 82 39.0
COL.COLO4_29621 Corchorus olitorius HOM05D001667 ORTHO05D001508 8.5e-08 60.8 87 39.1
Psat6g082040 Pisum sativum HOM05D001667 ORTHO05D001508 8.5e-08 60.8 100 37.0
CSS0036703 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 1.1e-07 60.5 89 37.1
CSS0040873 Camellia sinensis var. sinensis HOM05D001667 ORTHO05D001508 1.1e-07 60.5 89 37.1
Ca_11725_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 1.1e-07 60.5 96 37.5
BcaB01g05731 Brassica carinata HOM05D001667 ORTHO05D001508 1.5e-07 60.1 71 42.3
A03p02660 Brassica napus HOM05D001667 ORTHO05D001508 1.5e-07 60.1 71 42.3
C03p03060 Brassica napus HOM05D001667 ORTHO05D001508 1.5e-07 60.1 71 42.3
BolC3t12854H Brassica oleracea HOM05D001667 ORTHO05D001508 1.5e-07 60.1 71 42.3
BraA03t09627Z Brassica rapa HOM05D001667 ORTHO05D001508 1.5e-07 60.1 71 42.3
Duzib106G0445 Durio zibethinus HOM05D001667 ORTHO05D001508 1.9e-07 59.7 83 37.3
Migut.D02403 Erythranthe guttata HOM05D001667 ORTHO05D001508 1.9e-07 59.7 68 36.8
Migut.D02419 Erythranthe guttata HOM05D001667 ORTHO05D001508 1.9e-07 59.7 68 36.8
Medtr1g058120 Medicago truncatula HOM05D001667 ORTHO05D001508 1.9e-07 59.7 85 41.2
RcHm_v2.0_Chr3g0475171 Rosa chinensis HOM05D001667 ORTHO05D001508 1.9e-07 59.7 76 42.1
BcaB05g21676 Brassica carinata HOM05D001667 ORTHO05D001508 2.5e-07 59.3 96 39.6
AL6G16300 Arabidopsis lyrata HOM05D001667 ORTHO05D001508 3.2e-07 58.9 43 55.8
AT5G06270 Arabidopsis thaliana HOM05D001667 ORTHO05D001508 3.2e-07 58.9 43 55.8
Cfa016662 Carpinus fangiana HOM05D001667 ORTHO05D001508 3.2e-07 58.9 83 38.6
Ciclev10013147m.g Citrus clementina HOM05D001667 ORTHO05D001508 3.2e-07 58.9 83 38.6
Haze_19672 Corylus avellana HOM05D001667 ORTHO05D001508 3.2e-07 58.9 83 38.6
Duzib093G1761 Durio zibethinus HOM05D001667 ORTHO05D001508 3.2e-07 58.9 86 38.4
FvH4_6g19800 Fragaria vesca HOM05D001667 ORTHO05D001508 3.2e-07 58.9 76 42.1
FAN02G0800 Fragaria x ananassa HOM05D001667 ORTHO05D001508 3.2e-07 58.9 76 42.1
FAN05G2851 Fragaria x ananassa HOM05D001667 ORTHO05D001508 3.2e-07 58.9 76 42.1
FAN05G3938 Fragaria x ananassa HOM05D001667 ORTHO05D001508 3.2e-07 58.9 76 42.1
FAN14G5362 Fragaria x ananassa HOM05D001667 ORTHO05D001508 3.2e-07 58.9 76 42.1
Gohir.A09G137100 Gossypium hirsutum HOM05D001667 ORTHO05D001508 3.2e-07 58.9 85 37.6
Gorai.006G151100 Gossypium raimondii HOM05D001667 ORTHO05D001508 3.2e-07 58.9 85 37.6
Hma1.2p1_1178F.1_g264380 Hydrangea macrophylla HOM05D001667 ORTHO05D001508 3.2e-07 58.9 68 42.6
Sed0009866 Sechium edule HOM05D001667 ORTHO05D001508 3.2e-07 58.9 72 41.7
THA.LOC104816609 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 3.2e-07 58.9 71 42.3
Atru.chr8.1412 Acer truncatum HOM05D001667 ORTHO05D001508 4.2e-07 58.5 83 38.6
Medtr7g105730 Medicago truncatula HOM05D001667 ORTHO05D001508 4.2e-07 58.5 80 40.0
QL07p037582 Quercus lobata HOM05D001667 ORTHO05D001508 4.2e-07 58.5 112 33.9
BcaC05g29350 Brassica carinata HOM05D001667 ORTHO05D001508 5.5e-07 58.2 37 62.2
A05p37730 Brassica napus HOM05D001667 ORTHO05D001508 5.5e-07 58.2 37 62.2
C05p56330 Brassica napus HOM05D001667 ORTHO05D001508 5.5e-07 58.2 37 62.2
BolC5t34297H Brassica oleracea HOM05D001667 ORTHO05D001508 5.5e-07 58.2 37 62.2
BraA05t22568Z Brassica rapa HOM05D001667 ORTHO05D001508 5.5e-07 58.2 37 62.2
Dinv21698 Davidia involucrata HOM05D001667 ORTHO05D001508 5.5e-07 58.2 37 62.2
MD14G1034000 Malus domestica HOM05D001667 ORTHO05D001508 5.5e-07 58.2 72 38.9
Os01g0863500 Oryza sativa ssp. japonica HOM05D001667 ORTHO05D001508 5.5e-07 58.2 33 69.7
Peaxi162Scf00091g00074 Petunia axillaris HOM05D000010 ORTHO05D005236 5.5e-07 58.2 73 43.8
Sp6g36590 Schrenkiella parvula HOM05D001667 ORTHO05D001508 5.5e-07 58.2 71 42.3
Thecc.05G099800 Theobroma cacao HOM05D001667 ORTHO05D001508 5.5e-07 58.2 87 36.8
TPR.G8730 Trifolium pratense HOM05D001667 ORTHO05D001508 5.5e-07 58.2 85 40.0
C02p02640 Brassica napus HOM05D001667 ORTHO05D001508 7.2e-07 57.8 119 36.1
BolC2t06230H Brassica oleracea HOM05D001667 ORTHO05D001508 7.2e-07 57.8 119 36.1
Eucgr.A02613 Eucalyptus grandis HOM05D001667 ORTHO05D001508 7.2e-07 57.8 83 38.6
Gohir.D01G126900 Gossypium hirsutum HOM05D001667 ORTHO05D001508 7.2e-07 57.8 90 35.6
Potri.006G206000 Populus trichocarpa HOM05D001667 ORTHO05D001508 7.2e-07 57.8 72 40.3
Sabra06G0158900 Salix brachista HOM05D001667 ORTHO05D001508 7.2e-07 57.8 72 40.3
SGA_v2.0_scaffold295G47499 Striga asiatica HOM05D001667 ORTHO05D001508 7.2e-07 57.8 96 34.4
Ah.15g090550 Amaranthus hybridus HOM05D001667 ORTHO05D001508 9.4e-07 57.4 68 42.6
BcaB06g25603 Brassica carinata HOM05D001667 ORTHO05D001508 9.4e-07 57.4 37 62.2
CARHR206990 Cardamine hirsuta HOM05D001667 ORTHO05D001508 9.4e-07 57.4 96 39.6
ClCG10G018560 Citrullus lanatus HOM05D001667 ORTHO05D001508 9.4e-07 57.4 71 42.3
Duzib128G0359 Durio zibethinus HOM05D001667 ORTHO05D001508 9.4e-07 57.4 72 38.9
Thhalv10015029m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 9.4e-07 57.4 96 39.6
Manes.08G030700 Manihot esculenta HOM05D001667 ORTHO05D001508 9.4e-07 57.4 83 37.3
Oeu017706.1 Olea europaea HOM05D001667 ORTHO05D001508 9.4e-07 57.4 72 40.3
PSO801G0813 Papaver somniferum HOM05D001667 ORTHO05D001508 9.4e-07 57.4 71 40.8
SHI27881 Sapria himalayana HOM05D001667 ORTHO05D001508 9.4e-07 57.4 72 38.9
Sed0022322 Sechium edule HOM05D001667 ORTHO05D001508 9.4e-07 57.4 72 40.3
TAR636G2183 Trochodendron aralioides HOM05D001667 ORTHO05D001508 9.4e-07 57.4 121 33.1
Cc00_g18340 Coffea canephora HOM05D001667 ORTHO05D001508 1.2e-06 57.0 72 38.9
MELO3C009512.2 Cucumis melo HOM05D001667 ORTHO05D001508 1.2e-06 57.0 102 36.3
CsaV3_3G037690 Cucumis sativus L. HOM05D001667 ORTHO05D001508 1.2e-06 57.0 102 36.3
CsaV3_6G040940 Cucumis sativus L. HOM05D001667 ORTHO05D001508 1.2e-06 57.0 85 35.3
MD12G1033200 Malus domestica HOM05D001667 ORTHO05D001508 1.2e-06 57.0 72 38.9
Nitab4.5_0003516g0020 Nicotiana tabacum HOM05D001667 ORTHO05D001508 1.2e-06 57.0 43 53.5
Potri.016G073400 Populus trichocarpa HOM05D001667 ORTHO05D001508 1.2e-06 57.0 72 40.3
TPR.G24419 Trifolium pratense HOM05D001667 ORTHO05D001508 1.2e-06 57.0 80 40.0
Zm00001eb146970 Zea mays HOM05D001667 ORTHO05D001508 1.2e-06 57.0 33 66.7
MSTRG.19292 Avicennia marina HOM05D001667 ORTHO05D001508 1.6e-06 56.6 89 37.1
BcaC06g32346 Brassica carinata HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
BcaC06g32358 Brassica carinata HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
BcaC06g32359 Brassica carinata HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
A10p30140 Brassica napus HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
C09p70550 Brassica napus HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
BolC9t59800H Brassica oleracea HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
BraA02t04875Z Brassica rapa HOM05D001667 ORTHO05D001508 1.6e-06 56.6 119 35.3
BraA10t45052Z Brassica rapa HOM05D001667 ORTHO05D001508 1.6e-06 56.6 43 53.5
Gohir.A04G060300 Gossypium hirsutum HOM05D001667 ORTHO05D001508 1.6e-06 56.6 83 36.1
TWI74G1322 Tripterygium wilfordii HOM05D001667 ORTHO05D001508 1.6e-06 56.6 83 36.1
Dinv31738 Davidia involucrata HOM05D001667 ORTHO05D001508 2.1e-06 56.2 83 37.3
Gohir.D01G192900 Gossypium hirsutum HOM05D001667 ORTHO05D001508 2.1e-06 56.2 72 38.9
Gohir.D04G095700 Gossypium hirsutum HOM05D001667 ORTHO05D001508 2.1e-06 56.2 83 36.1
Gorai.002G236700 Gossypium raimondii HOM05D001667 ORTHO05D001508 2.1e-06 56.2 72 38.9
Gorai.009G398500 Gossypium raimondii HOM05D001667 ORTHO05D001508 2.1e-06 56.2 83 36.1
Lalb_Chr02g0154691 Lupinus albus HOM05D001667 ORTHO05D001508 2.1e-06 56.2 73 38.4
MBI17_g16778_MAGBIO Magnolia biondii HOM05D001667 ORTHO05D001508 2.1e-06 56.2 108 34.3
Manes.09G049500 Manihot esculenta HOM05D001667 ORTHO05D001508 2.1e-06 56.2 82 37.8
Oeu043480.1 Olea europaea HOM05D001667 ORTHO05D001508 2.1e-06 56.2 43 51.2
PGR004G2379 Punica granatum HOM05D001667 ORTHO05D001508 2.1e-06 56.2 84 36.9
Sed0016026 Sechium edule HOM05D001667 ORTHO05D001508 2.1e-06 56.2 76 38.2
HPP92_011910 Vanilla planifolia HOM05D001667 ORTHO05D001508 2.1e-06 56.2 88 37.5
Aa31sc52G70 Aethionema arabicum HOM05D001667 ORTHO05D001508 2.7e-06 55.8 43 53.5
Carub.0006s0516 Capsella rubella HOM05D001667 ORTHO05D001508 2.7e-06 55.8 43 53.5
Ca_09037_v3 Cicer arietinum L. HOM05D001667 ORTHO05D001508 2.7e-06 55.8 78 41.0
Migut.L01911 Erythranthe guttata HOM05D001667 ORTHO05D001508 2.7e-06 55.8 38 55.3
FAN09G1589 Fragaria x ananassa HOM05D001667 ORTHO05D001508 2.7e-06 55.8 76 40.8
Glyma.03G199800 Glycine max HOM05D001667 ORTHO05D001508 2.7e-06 55.8 46 52.2
Glyma.19G197400 Glycine max HOM05D001667 ORTHO05D001508 2.7e-06 55.8 46 52.2
Gorai.002G157600 Gossypium raimondii HOM05D001667 ORTHO05D001508 2.7e-06 55.8 119 31.1
Hma1.2p1_0064F.1_g034920 Hydrangea macrophylla HOM05D001667 ORTHO05D001508 2.7e-06 55.8 73 38.4
Lalb_Chr20g0111511 Lupinus albus HOM05D001667 ORTHO05D001508 2.7e-06 55.8 42 52.4
Os05g0442000 Oryza sativa ssp. japonica HOM05D001667 ORTHO05D001508 2.7e-06 55.8 35 57.1
SalBow6G6350 Salvia bowleyana HOM05D001667 ORTHO05D001508 2.7e-06 55.8 39 53.8
THA.LOC104826812 Tarenaya hassleriana HOM05D001667 ORTHO05D001508 2.7e-06 55.8 43 53.5
MSTRG.5878 Avicennia marina HOM05D001667 ORTHO05D001508 3.6e-06 55.5 71 39.4
ClCG04G010320 Citrullus lanatus HOM05D001667 ORTHO05D001508 3.6e-06 55.5 89 34.8
Gorai.006G113900 Gossypium raimondii HOM05D001667 ORTHO05D001508 3.6e-06 55.5 43 53.5
Lj1E1035T0 Lonicera japonica HOM05D001667 ORTHO05D001508 3.6e-06 55.5 47 46.8
MD03G1151000 Malus domestica HOM05D001667 ORTHO05D001508 3.6e-06 55.5 37 62.2
Phvul.001G193700 Phaseolus vulgaris HOM05D001667 ORTHO05D001508 3.6e-06 55.5 46 50.0
Sed0007684 Sechium edule HOM05D001667 ORTHO05D001508 3.6e-06 55.5 96 35.4
Sc12g0004750 Simmondsia chinensis HOM05D001667 ORTHO05D001508 3.6e-06 55.5 80 40.0
VMungo1383G0716 Vigna mungo HOM05D001667 ORTHO05D001508 3.6e-06 55.5 46 50.0
arahy.Tifrunner.gnm1.ann1.8QQ9KG Arachis hypogaea HOM05D001667 ORTHO05D001508 4.7e-06 55.1 79 45.6
arahy.Tifrunner.gnm1.ann1.DY9K7Z Arachis hypogaea HOM05D001667 ORTHO05D001508 4.7e-06 55.1 79 45.6
BcaC01g04100 Brassica carinata HOM05D001667 ORTHO05D001508 4.7e-06 55.1 37 56.8
BolC3t16768H Brassica oleracea HOM05D001667 ORTHO05D001508 4.7e-06 55.1 37 56.8
COL.COLO4_22643 Corchorus olitorius HOM05D001667 ORTHO05D001508 4.7e-06 55.1 70 41.4
Dinv21143 Davidia involucrata HOM05D001667 ORTHO05D001508 4.7e-06 55.1 84 36.9
Thhalv10021790m.g Eutrema salsugineum HOM05D001667 ORTHO05D001508 4.7e-06 55.1 37 56.8
Gohir.A09G097500 Gossypium hirsutum HOM05D001667 ORTHO05D001508 4.7e-06 55.1 43 53.5
Gohir.D09G097200 Gossypium hirsutum HOM05D001667 ORTHO05D001508 4.7e-06 55.1 86 37.2
Prupe.7G099000 Prunus persica HOM05D001667 ORTHO05D001508 4.7e-06 55.1 72 37.5
QL03p057079 Quercus lobata HOM05D001667 ORTHO05D001508 4.7e-06 55.1 43 53.5
Sp3g09840 Schrenkiella parvula HOM05D001667 ORTHO05D001508 4.7e-06 55.1 37 56.8
Sc21g0006930 Simmondsia chinensis HOM05D001667 ORTHO05D001508 4.7e-06 55.1 69 42.0
Solyc06g073990.2 Solanum lycopersicum HOM05D001667 ORTHO05D001508 4.7e-06 55.1 69 39.1
unitig_699.g19452 Utricularia gibba HOM05D001667 ORTHO05D001508 4.7e-06 55.1 39 53.8
EL10Ac7g16821 Beta vulgaris HOM05D001667 ORTHO05D001508 6.1e-06 54.7 116 30.2
Carub.0003s1093 Capsella rubella HOM05D001667 ORTHO05D001508 6.1e-06 54.7 81 33.3
Gohir.A01G202900 Gossypium hirsutum HOM05D001667 ORTHO05D001508 6.1e-06 54.7 43 51.2
Lj1g0028219 Lotus japonicus HOM05D001667 ORTHO05D001508 6.1e-06 54.7 83 34.9
Oeu038096.1 Olea europaea HOM05D001667 ORTHO05D001508 6.1e-06 54.7 71 39.4
Sopen11g027480 Solanum pennellii HOM05D001667 ORTHO05D001508 6.1e-06 54.7 68 39.7
PGSC0003DMG400019617 Solanum tuberosum HOM05D001667 ORTHO05D001508 6.1e-06 54.7 68 39.7
CiPaw.10G014800 Carya illinoinensis HOM05D001667 ORTHO05D001508 8.0e-06 54.3 102 34.3
Oeu010757.1 Olea europaea HOM05D001667 ORTHO05D001508 8.0e-06 54.3 71 39.4
Sopen06g030400 Solanum pennellii HOM05D001667 ORTHO05D001508 8.0e-06 54.3 69 39.1
PGSC0003DMG400005933 Solanum tuberosum HOM05D001667 ORTHO05D001508 8.0e-06 54.3 37 59.5
Thecc.09G277000 Theobroma cacao HOM05D001667 ORTHO05D001508 8.0e-06 54.3 68 41.2
Zm00001eb288880 Zea mays HOM05D001667 ORTHO05D001508 8.0e-06 54.3 33 60.6


User provided reference genes

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