Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00443 Nelumbo nucifera HOM05D003457 ORTHO05D009249 6.7e-207 723.8 365 100.0
TAR636G2436 Trochodendron aralioides HOM05D003457 ORTHO05D009249 3.6e-83 312.8 268 65.3
TAR629G1045 Trochodendron aralioides HOM05D003457 ORTHO05D009249 1.8e-82 310.5 313 58.1
Dinv35380 Davidia involucrata HOM05D003457 ORTHO05D009746 6.1e-67 258.8 368 46.5
Dinv29212 Davidia involucrata HOM05D003457 ORTHO05D009249 3.0e-66 256.5 366 44.8
MBI12_g09299_MAGBIO Magnolia biondii HOM05D003457 ORTHO05D009249 6.1e-59 232.3 305 49.8
Actinidia34268 Actinidia chinensis HOM05D003457 ORTHO05D009249 3.6e-51 206.5 366 39.9
CSS0022238 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 4.0e-50 203.0 372 39.0
CSS0029860 Camellia sinensis var. sinensis HOM05D003457 ORTHO05D009249 4.0e-50 203.0 372 39.0
Actinidia08697 Actinidia chinensis HOM05D003457 ORTHO05D009249 1.3e-48 198.0 369 38.2
Gohir.D04G000050 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.6e-46 191.0 369 38.5
Gorai.012G000700 Gossypium raimondii HOM05D003457 ORTHO05D009249 7.7e-46 188.7 369 38.2
Thecc.03G208400 Theobroma cacao HOM05D003457 ORTHO05D009249 6.6e-45 185.7 375 34.9
Duzib084G1096 Durio zibethinus HOM05D003457 ORTHO05D009249 2.3e-42 177.2 372 35.5
Duzib205G0475 Durio zibethinus HOM05D003457 ORTHO05D009249 7.5e-41 172.2 373 33.8
Manes.01G043100 Manihot esculenta HOM05D003457 ORTHO05D009249 1.7e-40 171.0 366 35.2
Gohir.D04G000080 Gossypium hirsutum HOM05D003457 ORTHO05D009249 1.8e-39 167.5 356 37.4
PGSC0003DMG400000588 Solanum tuberosum HOM05D003457 ORTHO05D009249 2.4e-39 167.2 368 37.2
Rhsim03G0215300 Rhododendron simsii HOM05D003457 ORTHO05D009249 5.4e-39 166.0 272 41.9
Aqoxy5G04336 Aquilegia oxysepala HOM05D003457 ORTHO05D009249 1.6e-38 164.5 358 37.4
Sopen03g022030 Solanum pennellii HOM05D003457 ORTHO05D009249 2.7e-38 163.7 367 36.2
Solyc03g081310.3 Solanum lycopersicum HOM05D003457 ORTHO05D009249 3.5e-38 163.3 370 36.8
Ciclev10020653m.g Citrus clementina HOM05D003457 ORTHO05D009249 4.6e-38 162.9 275 40.7
MD07G1298800 Malus domestica HOM05D003457 ORTHO05D009249 3.0e-37 160.2 384 35.7
FvH4_7g32890 Fragaria vesca HOM05D003457 ORTHO05D009249 6.6e-37 159.1 381 34.4
Nitab4.5_0000319g0070 Nicotiana tabacum HOM05D003457 ORTHO05D009249 8.6e-37 158.7 369 33.1
TWI23G0841 Tripterygium wilfordii HOM05D003457 ORTHO05D009249 8.6e-37 158.7 365 36.2
Duzib068G0780 Durio zibethinus HOM05D003457 ORTHO05D009249 5.6e-36 156.0 334 34.1
FAN03G1743 Fragaria x ananassa HOM05D003457 ORTHO05D009746 6.2e-35 152.5 375 34.7
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.8e-34 151.0 281 40.2
Potri.015G005100 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.3e-34 150.6 376 35.4
FAN10G0211 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.1e-34 150.2 375 34.4
ClCG00G005020 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.5e-33 147.9 272 37.5
ClCG01G004590 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.5e-33 147.9 272 37.5
ClCG01G004630 Citrullus lanatus HOM05D003457 ORTHO05D009249 1.5e-33 147.9 272 37.5
Eucgr.K00429 Eucalyptus grandis HOM05D003457 ORTHO05D009249 2.6e-33 147.1 373 34.0
Nitab4.5_0005040g0050 Nicotiana tabacum HOM05D003457 ORTHO05D009249 4.4e-33 146.4 269 39.8
FAN01G1561 Fragaria x ananassa HOM05D003457 ORTHO05D009746 3.7e-32 143.3 372 33.6
MD01G1228100 Malus domestica HOM05D003457 ORTHO05D009249 3.7e-32 143.3 391 34.3
Prupe.2G318600 Prunus persica HOM05D003457 ORTHO05D009249 8.3e-32 142.1 426 32.9
RcHm_v2.0_Chr1g0382841 Rosa chinensis HOM05D003457 ORTHO05D009249 1.2e-30 138.3 377 32.6
PGR142G1344 Punica granatum HOM05D003457 ORTHO05D009249 1.6e-30 137.9 365 32.1
MELO3C033815.2 Cucumis melo HOM05D003457 ORTHO05D009249 2.7e-30 137.1 254 36.2
Cfa016162 Carpinus fangiana HOM05D003457 ORTHO05D009249 3.5e-30 136.7 379 33.2
FAN10G3191 Fragaria x ananassa HOM05D003457 ORTHO05D009746 1.3e-29 134.8 372 32.3
CsaV3_5G004840 Cucumis sativus L. HOM05D003457 ORTHO05D009249 2.3e-29 134.0 269 36.8
THA.LOC104798986 Tarenaya hassleriana HOM05D003457 ORTHO05D009249 2.3e-29 134.0 353 33.4
Lsat_1_v5_gn_9_3980 Lactuca sativa HOM05D003457 ORTHO05D009249 6.6e-29 132.5 254 37.8
Lsat_1_v5_gn_5_51360 Lactuca sativa HOM05D003457 ORTHO05D009249 1.9e-28 131.0 254 37.4
CiPaw.06G041400 Carya illinoinensis HOM05D003457 ORTHO05D009249 2.5e-28 130.6 390 34.9
MSTRG.31 Avicennia marina HOM05D003457 ORTHO05D009249 4.3e-28 129.8 367 34.1
Oeu037975.2 Olea europaea HOM05D003457 ORTHO05D009249 5.6e-28 129.4 296 36.5
Lsat_1_v5_gn_1_120581 Lactuca sativa HOM05D003457 ORTHO05D009249 9.5e-28 128.6 254 36.2
Lsat_1_v5_gn_8_4361 Lactuca sativa HOM05D003457 ORTHO05D009249 3.6e-27 126.7 354 31.1
EL10Ac3g05182 Beta vulgaris HOM05D003457 ORTHO05D009249 8.9e-26 122.1 353 32.6
HPP92_015415 Vanilla planifolia HOM05D003457 ORTHO05D009249 1.2e-25 121.7 351 31.9
PSO782G2427 Papaver somniferum HOM05D003457 ORTHO05D009249 1.5e-25 121.3 256 35.5
Migut.F00990 Erythranthe guttata HOM05D003457 ORTHO05D009249 2.0e-25 120.9 363 31.4
Lsat_1_v5_gn_7_20360 Lactuca sativa HOM05D003457 ORTHO05D009249 5.8e-25 119.4 288 34.7
CAN.G303.15 Capsicum annuum HOM05D003457 ORTHO05D009249 1.3e-24 118.2 248 36.7
CDE01G0392 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 1.3e-24 118.2 346 31.5
HanXRQChr08g0225921 Helianthus annuus HOM05D003457 ORTHO05D009249 2.9e-24 117.1 324 34.0
Peaxi162Scf00300g00833 Petunia axillaris HOM05D003457 ORTHO05D009249 4.1e-23 113.2 270 34.8
CARHR188920 Cardamine hirsuta HOM05D003457 ORTHO05D009249 5.4e-23 112.8 267 34.5
CDE02G1140 Ceratophyllum demersum HOM05D003457 ORTHO05D009249 2.7e-22 110.5 352 30.7
Sp2g22840 Schrenkiella parvula HOM05D003457 ORTHO05D009249 2.7e-22 110.5 269 34.9
Aa31LG11G3740 Aethionema arabicum HOM05D003457 ORTHO05D009249 3.5e-22 110.2 348 32.2
Sabra15G0003600 Salix brachista HOM05D003457 ORTHO05D009249 3.5e-22 110.2 274 36.1
AL6G36090 Arabidopsis lyrata HOM05D003457 ORTHO05D009249 4.6e-22 109.8 265 34.3
AUR62035619 Chenopodium quinoa HOM05D003457 ORTHO05D009249 6.0e-22 109.4 311 33.8
ATR1155G002 Amborella trichopoda HOM05D003457 ORTHO05D009249 1.0e-21 108.6 264 32.6
AUR62006007 Chenopodium quinoa HOM05D003457 ORTHO05D009746 3.9e-21 106.7 318 32.1
Phvul.009G045300 Phaseolus vulgaris HOM05D003457 ORTHO05D009249 3.9e-21 106.7 256 34.8
VMungo1309G3135 Vigna mungo HOM05D003457 ORTHO05D009249 1.5e-20 104.8 256 34.0
Cc02_g00840 Coffea canephora HOM05D003457 ORTHO05D009249 2.5e-20 104.0 377 30.2
Thhalv10005511m.g Eutrema salsugineum HOM05D003457 ORTHO05D009249 3.3e-20 103.6 279 34.8
AT5G24500 Arabidopsis thaliana HOM05D003457 ORTHO05D009249 5.6e-20 102.8 264 34.1
SalBow2G2220 Salvia bowleyana HOM05D003457 ORTHO05D009249 5.6e-20 102.8 269 36.4
Sc13g0010260 Simmondsia chinensis HOM05D003457 ORTHO05D009249 5.6e-20 102.8 357 32.8
Carub.0006s2232 Capsella rubella HOM05D003457 ORTHO05D009249 7.3e-20 102.4 260 32.3
SGA_v2.0_scaffold141G35555 Striga asiatica HOM05D003457 ORTHO05D009249 7.3e-20 102.4 363 28.9
COL.COLO4_14368 Corchorus olitorius HOM05D003457 ORTHO05D009249 1.6e-19 101.3 369 27.1
Glyma.04G228600 Glycine max HOM05D003457 ORTHO05D009249 3.6e-19 100.1 258 31.4
Glyma.06G136400 Glycine max HOM05D003457 ORTHO05D009249 3.6e-19 100.1 256 31.2
SEGI_37736 Sequoiadendron giganteum HOM05D013917 ORTHO05D013169 3.6e-19 100.1 262 33.6
Lj1g0002342 Lotus japonicus HOM05D003457 ORTHO05D009249 4.7e-19 99.8 282 32.3
Ah.07g204690 Amaranthus hybridus HOM05D003457 ORTHO05D009249 8.1e-19 99.0 246 35.4
Lsat_1_v5_gn_7_39641 Lactuca sativa HOM05D003457 ORTHO05D009249 1.1e-18 98.6 238 34.0
Potri.012G021300 Populus trichocarpa HOM05D003457 ORTHO05D009249 2.3e-18 97.4 280 33.6
Psat5g072040 Pisum sativum HOM05D003457 ORTHO05D009249 5.2e-18 96.3 268 31.3
DCAR_020371 Daucus carota HOM05D003457 ORTHO05D009249 1.2e-17 95.1 260 33.8
Sabra12G0012300 Salix brachista HOM05D003457 ORTHO05D009249 2.2e-16 90.9 274 31.4
Ca_16777_v3 Cicer arietinum L. HOM05D003457 ORTHO05D009249 2.9e-16 90.5 289 30.8
Lsat_1_v5_gn_5_150000 Lactuca sativa HOM05D003457 ORTHO05D009249 1.4e-15 88.2 210 32.9
Medtr3g092670 Medicago truncatula HOM05D003457 ORTHO05D009249 7.1e-15 85.9 268 29.5
Sabra05G0139600 Salix brachista HOM05D003457 ORTHO05D009249 1.6e-14 84.7 271 30.3
BcaB07g29912 Brassica carinata HOM05D003457 ORTHO05D009249 6.0e-14 82.8 258 29.5
BcaC03g17967 Brassica carinata HOM05D003457 ORTHO05D009249 6.0e-14 82.8 248 30.6
CiPaw.02G048700 Carya illinoinensis HOM05D003457 ORTHO05D009249 7.8e-14 82.4 192 38.0
unitig_90.g27506 Utricularia gibba HOM05D003457 ORTHO05D009249 5.1e-13 79.7 185 38.9
C02p60250 Brassica napus HOM05D003457 ORTHO05D009249 6.6e-13 79.3 248 29.8
TPR.G33664 Trifolium pratense HOM05D003457 ORTHO05D009249 1.5e-12 78.2 288 29.2
A02p40300 Brassica napus HOM05D003457 ORTHO05D009249 1.9e-12 77.8 239 29.3
BolC2t12082H Brassica oleracea HOM05D003457 ORTHO05D009249 3.3e-12 77.0 255 29.8
PSO063G5804 Papaver somniferum HOM05D003457 ORTHO05D009249 1.2e-11 75.1 140 36.4
BraA02t08999Z Brassica rapa HOM05D003457 ORTHO05D009249 4.7e-11 73.2 239 26.8
Lalb_Chr08g0239631 Lupinus albus HOM05D003457 ORTHO05D009249 5.2e-10 69.7 255 29.8
QL09p007211 Quercus lobata HOM05D003457 ORTHO05D009249 1.2e-09 68.6 343 25.9
Atru.chr12.2426 Acer truncatum HOM05D003457 ORTHO05D009249 1.7e-08 64.7 158 37.3


User provided reference genes

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