Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00438 Nelumbo nucifera HOM05D008613 ORTHO05D006961 6.9e-44 180.3 91 100.0
CSS0023145 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 7.7e-11 70.5 90 48.9
CSS0022315 Camellia sinensis var. sinensis HOM05D008613 ORTHO05D006961 2.9e-10 68.6 90 48.9
TAR629G3181 Trochodendron aralioides HOM05D008613 ORTHO05D006961 6.5e-10 67.4 94 48.9
Actinidia08695 Actinidia chinensis HOM05D008837 ORTHO05D006961 1.4e-09 66.2 92 46.7
Oeu061026.1 Olea europaea HOM05D008837 ORTHO05D006961 1.4e-09 66.2 92 48.9
Dinv29215 Davidia involucrata HOM05D008837 ORTHO05D006961 1.9e-09 65.9 99 45.5
Prupe.5G133100 Prunus persica HOM05D008613 ORTHO05D006961 1.9e-09 65.9 89 46.1
Ciclev10023060m.g Citrus clementina HOM05D008837 ORTHO05D006961 2.5e-09 65.5 101 45.5
Duzib205G1760 Durio zibethinus HOM05D008613 ORTHO05D006961 4.2e-09 64.7 94 44.7
Manes.01G055100 Manihot esculenta HOM05D008613 ORTHO05D006961 4.2e-09 64.7 91 46.2
Eucgr.A01407 Eucalyptus grandis HOM05D008837 ORTHO05D011237 7.2e-09 63.9 91 45.1
Nitab4.5_0000319g0150 Nicotiana tabacum HOM05D008837 ORTHO05D006961 1.2e-08 63.2 104 43.3
QL02p027286 Quercus lobata HOM05D008613 ORTHO05D006961 1.6e-08 62.8 99 40.4
Thecc.03G208100 Theobroma cacao HOM05D018669 ORTHO05D011237 1.6e-08 62.8 91 49.5
Manes.05G197800 Manihot esculenta HOM05D008837 ORTHO05D011237 2.1e-08 62.4 91 42.9
Ah.13g070730 Amaranthus hybridus HOM05D008613 ORTHO05D011237 2.7e-08 62.0 90 41.1
Eucgr.A01409 Eucalyptus grandis HOM05D008837 ORTHO05D011237 3.6e-08 61.6 91 44.0
Hma1.2p1_0415F.1_g148160 Hydrangea macrophylla HOM05D008837 ORTHO05D006961 3.6e-08 61.6 93 46.2
TWI15G0337 Tripterygium wilfordii HOM05D008613 ORTHO05D006961 3.6e-08 61.6 95 44.2
Manes.01G055000 Manihot esculenta HOM05D008613 ORTHO05D006961 4.7e-08 61.2 94 44.7
Sabra15G0003300 Salix brachista HOM05D008837 ORTHO05D006961 4.7e-08 61.2 92 41.3
Rhsim03G0215000 Rhododendron simsii HOM05D000001 ORTHO05D000003 6.1e-08 60.8 100 44.0
Potri.001G450000 Populus trichocarpa HOM05D008613 ORTHO05D006961 7.9e-08 60.5 95 44.2
Sopen03g022050 Solanum pennellii HOM05D008837 ORTHO05D006961 7.9e-08 60.5 92 45.7
Potri.015G004800 Populus trichocarpa HOM05D008837 ORTHO05D011237 1.0e-07 60.1 92 42.4
Thecc.03G217500 Theobroma cacao HOM05D008613 ORTHO05D006961 1.0e-07 60.1 97 44.3
Nn3g18877 Nelumbo nucifera HOM05D031625 ORTHO05D006961 1.4e-07 59.7 92 42.4
Nn3g18879 Nelumbo nucifera HOM05D031625 ORTHO05D006961 1.4e-07 59.7 92 42.4
Sabra16G0303600 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-07 59.3 97 46.4
Sabra16G0303800 Salix brachista HOM05D008613 ORTHO05D006961 1.8e-07 59.3 97 46.4
DCAR_020368 Daucus carota HOM05D008837 ORTHO05D006961 2.3e-07 58.9 91 41.8
Gohir.A02G099100 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.3e-07 58.9 93 43.0
Potri.001G449800 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.3e-07 58.9 95 45.3
Potri.001G449900 Populus trichocarpa HOM05D008613 ORTHO05D006961 2.3e-07 58.9 95 45.3
Gohir.D03G084800 Gossypium hirsutum HOM05D008613 ORTHO05D006961 3.0e-07 58.5 93 43.0
PGSC0003DMG400003216 Solanum tuberosum HOM05D008837 ORTHO05D006961 3.9e-07 58.2 102 44.1
COL.COLO4_14365 Corchorus olitorius HOM05D018669 ORTHO05D011237 5.1e-07 57.8 89 44.9
Gorai.003G077900 Gossypium raimondii HOM05D008613 ORTHO05D006961 5.1e-07 57.8 93 41.9
Cpa.g.sc37.99 Carica papaya HOM05D008613 ORTHO05D006961 8.8e-07 57.0 91 40.7
PGR042G1156 Punica granatum HOM05D008837 ORTHO05D011237 8.8e-07 57.0 96 39.6
Solyc03g081330.1 Solanum lycopersicum HOM05D008837 ORTHO05D006961 8.8e-07 57.0 93 45.2
FvH4_5g10560 Fragaria vesca HOM05D008613 ORTHO05D006961 1.1e-06 56.6 95 44.2
FAN04G2016 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.1e-06 56.6 95 44.2
FAN08G0050 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.1e-06 56.6 95 44.2
FAN18G1327 Fragaria x ananassa HOM05D008613 ORTHO05D006961 1.1e-06 56.6 95 44.2
Atru.chr12.2412 Acer truncatum HOM05D008837 ORTHO05D011237 1.5e-06 56.2 93 43.0
COL.COLO4_10830 Corchorus olitorius HOM05D008613 ORTHO05D006961 2.0e-06 55.8 88 38.6
Sabra16G0303500 Salix brachista HOM05D008613 ORTHO05D006961 2.0e-06 55.8 97 44.3
Sabra16G0303700 Salix brachista HOM05D008613 ORTHO05D006961 2.0e-06 55.8 97 45.4
Gohir.D08G121900 Gossypium hirsutum HOM05D008613 ORTHO05D006961 2.6e-06 55.5 94 42.6
PGSC0003DMG400003217 Solanum tuberosum HOM05D008837 ORTHO05D006961 2.6e-06 55.5 93 41.9
Ciclev10017302m.g Citrus clementina HOM05D008837 ORTHO05D011237 4.4e-06 54.7 96 38.5
Duzib205G1426 Durio zibethinus HOM05D018669 ORTHO05D011237 4.4e-06 54.7 91 40.7
Gorai.004G128500 Gossypium raimondii HOM05D008613 ORTHO05D006961 4.4e-06 54.7 91 40.7
Nitab4.5_0000319g0160 Nicotiana tabacum HOM05D008837 ORTHO05D006961 5.7e-06 54.3 98 44.9
Nitab4.5_0005040g0030 Nicotiana tabacum HOM05D008837 ORTHO05D006961 5.7e-06 54.3 105 41.9
EL10Ac3g05185 Beta vulgaris HOM05D008837 ORTHO05D006961 7.4e-06 53.9 100 41.0
Prupe.5G133200 Prunus persica HOM05D008613 ORTHO05D006961 7.4e-06 53.9 97 42.3
Sabra16G0303900 Salix brachista HOM05D008613 ORTHO05D006961 7.4e-06 53.9 97 44.3
Solyc03g082350.2 Solanum lycopersicum HOM05D008837 ORTHO05D006961 7.4e-06 53.9 104 37.5


User provided reference genes

Program Settings