Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00422 Nelumbo nucifera HOM05D000314 ORTHO05D000189 1.9e-98 362.5 179 100.0
PGR031G3522 Punica granatum HOM05D000314 ORTHO05D000189 7.0e-32 141.4 120 65.8
CSS0041979 Camellia sinensis var. sinensis HOM05D000314 ORTHO05D000189 4.5e-31 138.7 132 62.9
CSS0047503 Camellia sinensis var. sinensis HOM05D000314 ORTHO05D000189 4.5e-31 138.7 132 62.9
FAN08G1480 Fragaria x ananassa HOM05D000314 ORTHO05D000189 4.5e-31 138.7 108 67.6
MD06G1121200 Malus domestica HOM05D000314 ORTHO05D000189 7.7e-31 137.9 149 55.7
Dinv18750 Davidia involucrata HOM05D000314 ORTHO05D000189 2.2e-30 136.3 138 61.6
FvH4_5g10700 Fragaria vesca HOM05D000314 ORTHO05D000189 5.0e-30 135.2 115 65.2
FAN18G2051 Fragaria x ananassa HOM05D000314 ORTHO05D000189 5.0e-30 135.2 115 65.2
Sc01g0010780 Simmondsia chinensis HOM05D000314 ORTHO05D000189 6.5e-30 134.8 157 51.0
MD14G1137800 Malus domestica HOM05D000314 ORTHO05D000189 8.5e-30 134.4 148 55.4
Aqoxy4G02559 Aquilegia oxysepala HOM05D000314 ORTHO05D000189 1.1e-29 134.0 135 59.3
Manes.01G055300 Manihot esculenta HOM05D000314 ORTHO05D000189 5.5e-29 131.7 107 66.4
Phvul.002G327900 Phaseolus vulgaris HOM05D000314 ORTHO05D000189 5.5e-29 131.7 123 62.6
TWI81G0547 Tripterygium wilfordii HOM05D000314 ORTHO05D000189 5.5e-29 131.7 98 70.4
Prupe.5G131800 Prunus persica HOM05D000314 ORTHO05D000189 7.2e-29 131.3 118 61.0
VMungo0251G0282 Vigna mungo HOM05D000314 ORTHO05D000189 7.2e-29 131.3 132 59.1
Cpa.g.sc37.88 Carica papaya HOM05D000314 ORTHO05D000189 1.4e-27 127.1 151 51.0
RcHm_v2.0_Chr7g0187441 Rosa chinensis HOM05D000314 ORTHO05D000189 1.4e-27 127.1 146 53.4
Glyma.08G052400 Glycine max HOM05D000314 ORTHO05D000189 1.5e-26 123.6 127 59.8
PSO063G1716 Papaver somniferum HOM05D000314 ORTHO05D000189 1.5e-26 123.6 116 61.2
FAN04G1844 Fragaria x ananassa HOM05D000314 ORTHO05D000189 4.4e-26 122.1 115 62.6
PSO170G1258 Papaver somniferum HOM05D000314 ORTHO05D000189 4.4e-26 122.1 115 60.9
Sed0005427 Sechium edule HOM05D000314 ORTHO05D000189 4.4e-26 122.1 100 64.0
Sabra16G0302700 Salix brachista HOM05D000314 ORTHO05D000189 5.7e-26 121.7 103 63.1
Potri.001G448300 Populus trichocarpa HOM05D000314 ORTHO05D000189 7.4e-26 121.3 103 63.1
Eucgr.D01672 Eucalyptus grandis HOM05D000314 ORTHO05D000189 1.7e-25 120.2 164 50.0
Atru.chr9.1855 Acer truncatum HOM05D000314 ORTHO05D000189 2.2e-25 119.8 100 65.0
Gohir.A02G098900 Gossypium hirsutum HOM05D000314 ORTHO05D000189 2.8e-25 119.4 109 62.4
Gorai.003G077600 Gossypium raimondii HOM05D000314 ORTHO05D000189 2.8e-25 119.4 109 62.4
Gohir.D03G085000 Gossypium hirsutum HOM05D000314 ORTHO05D000189 3.7e-25 119.0 102 63.7
Lsat_1_v5_gn_0_44320 Lactuca sativa HOM05D000314 ORTHO05D000189 3.7e-25 119.0 159 50.9
Lsat_1_v5_gn_6_81601 Lactuca sativa HOM05D000314 ORTHO05D000189 3.7e-25 119.0 159 50.9
CARHR255960 Cardamine hirsuta HOM05D000314 ORTHO05D000189 1.1e-24 117.5 139 51.1
Cfa011909 Carpinus fangiana HOM05D000314 ORTHO05D000189 1.4e-24 117.1 110 63.6
Lj4g0027676 Lotus japonicus HOM05D000314 ORTHO05D000189 1.4e-24 117.1 121 58.7
Sp6g06820 Schrenkiella parvula HOM05D000314 ORTHO05D000189 1.4e-24 117.1 134 50.7
Lalb_Chr05g0221821 Lupinus albus HOM05D000314 ORTHO05D000189 1.8e-24 116.7 120 60.0
Rhsim07G0076900 Rhododendron simsii HOM05D000314 ORTHO05D000189 1.8e-24 116.7 110 60.9
AT4G10630 Arabidopsis thaliana HOM05D000314 ORTHO05D000189 2.4e-24 116.3 137 48.2
Lsat_1_v5_gn_6_10120 Lactuca sativa HOM05D000314 ORTHO05D000189 3.1e-24 115.9 161 47.8
CANSAT21G1099 Cannabis sativa HOM05D000314 ORTHO05D000189 5.3e-24 115.2 120 59.2
Nitab4.5_0000479g0050 Nicotiana tabacum HOM05D000314 ORTHO05D000189 5.3e-24 115.2 151 51.0
Nitab4.5_0002720g0060 Nicotiana tabacum HOM05D000314 ORTHO05D000189 1.2e-23 114.0 149 51.0
Sopen08g031460 Solanum pennellii HOM05D000314 ORTHO05D000189 1.2e-23 114.0 146 52.7
MSTRG.12210 Avicennia marina HOM05D000314 ORTHO05D000189 1.6e-23 113.6 146 52.7
A03p29060 Brassica napus HOM05D000314 ORTHO05D000189 2.6e-23 112.8 156 47.4
BolC3t15823H Brassica oleracea HOM05D000314 ORTHO05D000189 2.6e-23 112.8 156 47.4
BraA03t12101Z Brassica rapa HOM05D000314 ORTHO05D000189 2.6e-23 112.8 156 47.4
BcaB01g02743 Brassica carinata HOM05D000314 ORTHO05D000189 5.9e-23 111.7 138 52.2
MBI12_g07775_MAGBIO Magnolia biondii HOM05D000314 ORTHO05D000189 5.9e-23 111.7 164 48.8
SGA_v2.0_scaffold104G30239 Striga asiatica HOM05D000314 ORTHO05D000189 5.9e-23 111.7 122 59.0
Aa31LG9G11370 Aethionema arabicum HOM05D000314 ORTHO05D000189 7.7e-23 111.3 144 49.3
BcaC01g04669 Brassica carinata HOM05D000314 ORTHO05D000189 7.7e-23 111.3 156 46.8
C03p35110 Brassica napus HOM05D000314 ORTHO05D000189 7.7e-23 111.3 156 46.8
Haze_09189 Corylus avellana HOM05D000314 ORTHO05D000189 7.7e-23 111.3 109 59.6
Duzib205G0571 Durio zibethinus HOM05D000314 ORTHO05D000189 1.7e-22 110.2 109 58.7
Oeu022029.1 Olea europaea HOM05D000314 ORTHO05D000189 1.7e-22 110.2 128 55.5
Hma1.2p1_0456F.1_g156760 Hydrangea macrophylla HOM05D000314 ORTHO05D000189 2.2e-22 109.8 105 61.0
CsaV3_5G001610 Cucumis sativus L. HOM05D000314 ORTHO05D000189 3.8e-22 109.0 98 61.2
Ah.12g053300 Amaranthus hybridus HOM05D000314 ORTHO05D000189 5.0e-22 108.6 150 48.0
COL.COLO4_10815 Corchorus olitorius HOM05D000314 ORTHO05D000189 5.0e-22 108.6 140 50.7
MELO3C005790.2 Cucumis melo HOM05D000314 ORTHO05D000189 5.0e-22 108.6 98 60.2
Thhalv10028781m.g Eutrema salsugineum HOM05D000314 ORTHO05D000189 6.5e-22 108.2 137 47.4
Solyc08g083270.3 Solanum lycopersicum HOM05D000314 ORTHO05D000189 8.5e-22 107.8 146 51.4
ClCG00G001100 Citrullus lanatus HOM05D000314 ORTHO05D000189 1.9e-21 106.7 98 60.2
ClCG01G001470 Citrullus lanatus HOM05D000314 ORTHO05D000189 1.9e-21 106.7 98 60.2
Thecc.03G219000 Theobroma cacao HOM05D000314 ORTHO05D000189 2.5e-21 106.3 106 59.4
AL6G44700 Arabidopsis lyrata HOM05D000314 ORTHO05D000189 4.2e-21 105.5 141 46.1
CiPaw.12G076500 Carya illinoinensis HOM05D000314 ORTHO05D000189 4.2e-21 105.5 99 60.6
GSVIVG01019669001 Vitis vinifera HOM05D000314 ORTHO05D000189 4.2e-21 105.5 76 71.1
Peaxi162Scf00074g00153 Petunia axillaris HOM05D000314 ORTHO05D000189 5.5e-21 105.1 144 49.3
Carub.0006s2944 Capsella rubella HOM05D000314 ORTHO05D000189 9.4e-21 104.4 144 45.8
EL10Ac5g12408 Beta vulgaris HOM05D000314 ORTHO05D000189 6.1e-20 101.7 161 43.5
Aa31LG6G7430 Aethionema arabicum HOM05D000314 ORTHO05D000189 2.3e-19 99.8 146 43.2
arahy.Tifrunner.gnm1.ann1.FTG0F4 Arachis hypogaea HOM05D000314 ORTHO05D000189 2.3e-19 99.8 100 57.0
FAN13G2252 Fragaria x ananassa HOM05D000314 ORTHO05D000189 1.2e-18 97.4 105 52.4
Ca_17208_v3 Cicer arietinum L. HOM05D000314 ORTHO05D000189 2.0e-18 96.7 119 52.9
Ca_17212_v3 Cicer arietinum L. HOM05D000314 ORTHO05D000189 2.0e-18 96.7 119 52.9
HanXRQChr07g0192341 Helianthus annuus HOM05D000314 ORTHO05D000189 2.6e-18 96.3 98 56.1
AUR62007070 Chenopodium quinoa HOM05D000314 ORTHO05D000189 9.8e-18 94.4 150 43.3
AUR62019935 Chenopodium quinoa HOM05D000314 ORTHO05D000189 3.7e-17 92.4 133 48.9
ECA233G1508 Erigeron canadensis HOM05D000314 ORTHO05D000189 3.7e-17 92.4 98 56.1
Psat7g001640 Pisum sativum HOM05D000314 ORTHO05D000189 3.7e-17 92.4 109 55.0
Ciclev10024406m.g Citrus clementina HOM05D000314 ORTHO05D000189 4.8e-17 92.0 109 52.3
Sp1g28200 Schrenkiella parvula HOM05D000314 ORTHO05D000189 1.4e-16 90.5 112 50.0
C05p32260 Brassica napus HOM05D000314 ORTHO05D000189 1.8e-16 90.1 108 51.9
BolC5t31956H Brassica oleracea HOM05D000314 ORTHO05D000189 1.8e-16 90.1 108 51.9
HanXRQChr13g0414371 Helianthus annuus HOM05D000314 ORTHO05D000189 1.8e-16 90.1 133 48.1
Medtr8g106900 Medicago truncatula HOM05D000314 ORTHO05D000189 1.8e-16 90.1 108 50.0
QL02p027634 Quercus lobata HOM05D000314 ORTHO05D000189 1.8e-16 90.1 109 51.4
CDE12G0105 Ceratophyllum demersum HOM05D000314 ORTHO05D002570 1.2e-15 87.4 132 43.9
A09p33560 Brassica napus HOM05D000314 ORTHO05D000189 1.6e-15 87.0 107 48.6
Thhalv10009787m.g Eutrema salsugineum HOM05D000314 ORTHO05D000189 2.0e-15 86.7 105 51.4
PGSC0003DMG400012231 Solanum tuberosum HOM05D000314 ORTHO05D000189 3.5e-15 85.9 125 48.0
DCAR_006560 Daucus carota HOM05D000314 ORTHO05D000189 7.7e-15 84.7 114 48.2
CDE04G2717 Ceratophyllum demersum HOM05D000314 ORTHO05D002570 2.9e-14 82.8 128 44.5
Migut.E01072 Erythranthe guttata HOM05D000314 ORTHO05D000189 5.0e-14 82.0 112 49.1
unitig_27.g25287 Utricularia gibba HOM05D000314 ORTHO05D000189 8.5e-14 81.3 113 47.8
AL1G47040 Arabidopsis lyrata HOM05D000314 ORTHO05D000189 1.1e-13 80.9 114 48.2
ECA240G4790 Erigeron canadensis HOM05D000314 ORTHO05D000189 1.9e-13 80.1 111 50.5
AT1G32760 Arabidopsis thaliana HOM05D000314 ORTHO05D000189 1.2e-12 77.4 116 46.6
BraA09t38903Z Brassica rapa HOM05D000314 ORTHO05D000189 6.1e-12 75.1 95 49.5
ATR1155G010 Amborella trichopoda HOM05D000314 ORTHO05D000189 5.2e-11 72.0 122 48.4
ATR0776G064 Amborella trichopoda HOM05D000314 ORTHO05D000189 1.7e-09 67.0 104 44.2
RcHm_v2.0_Chr5g0034501 Rosa chinensis HOM05D000314 ORTHO05D000189 6.3e-09 65.1 98 49.0
VMungo1383G2916 Vigna mungo HOM05D000314 ORTHO05D000189 6.3e-09 65.1 120 40.8
HPP92_007357 Vanilla planifolia HOM05D000314 ORTHO05D000189 8.3e-09 64.7 115 46.1
Phvul.001G190600 Phaseolus vulgaris HOM05D000314 ORTHO05D000189 1.1e-08 64.3 125 38.4
AL6G13450 Arabidopsis lyrata HOM05D000314 ORTHO05D000189 5.4e-08 62.0 101 42.6
QL07p038905 Quercus lobata HOM05D000314 ORTHO05D000189 5.4e-08 62.0 108 40.7
THA.LOC104816393 Tarenaya hassleriana HOM05D000314 ORTHO05D000189 7.0e-08 61.6 100 44.0
AT5G03870 Arabidopsis thaliana HOM05D000314 ORTHO05D000189 9.1e-08 61.2 101 42.6
QL07p038690 Quercus lobata HOM05D000314 ORTHO05D000189 1.2e-07 60.8 108 39.8
MSTRG.19267 Avicennia marina HOM05D000314 ORTHO05D000189 1.6e-07 60.5 97 39.2
Carub.0001s3109 Capsella rubella HOM05D000314 ORTHO05D000189 1.6e-07 60.5 72 52.8
Glyma.03G196400 Glycine max HOM05D000314 ORTHO05D000189 2.0e-07 60.1 146 35.6
RcHm_v2.0_Chr3g0473861 Rosa chinensis HOM05D000314 ORTHO05D000189 2.0e-07 60.1 98 39.8
Migut.J01677 Erythranthe guttata HOM05D000314 ORTHO05D000189 4.5e-07 58.9 98 40.8
Thhalv10013788m.g Eutrema salsugineum HOM05D000314 ORTHO05D000189 4.5e-07 58.9 93 41.9
SGA_v2.0_scaffold31G12909 Striga asiatica HOM05D000314 ORTHO05D000189 4.5e-07 58.9 98 40.8
FvH4_6g18880 Fragaria vesca HOM05D000314 ORTHO05D000189 5.9e-07 58.5 91 38.5
FAN09G1809 Fragaria x ananassa HOM05D000314 ORTHO05D000189 5.9e-07 58.5 91 39.6
FAN14G2392 Fragaria x ananassa HOM05D000314 ORTHO05D000189 5.9e-07 58.5 91 38.5
Glyma.19G194950 Glycine max HOM05D000314 ORTHO05D000189 1.0e-06 57.8 145 36.6
MSTRG.5848 Avicennia marina HOM05D000314 ORTHO05D000189 1.3e-06 57.4 98 38.8
TAR633G0064 Trochodendron aralioides HOM05D000314 ORTHO05D000189 1.3e-06 57.4 96 38.5
TAR633G2343 Trochodendron aralioides HOM05D000314 ORTHO05D000189 1.3e-06 57.4 96 38.5
THA.LOC104826942 Tarenaya hassleriana HOM05D000314 ORTHO05D000189 1.7e-06 57.0 100 41.0
FAN05G1456 Fragaria x ananassa HOM05D000314 ORTHO05D000189 2.3e-06 56.6 92 39.1
Carub.0006s0281 Capsella rubella HOM05D000314 ORTHO05D000189 2.9e-06 56.2 102 41.2
CsaV3_3G037340 Cucumis sativus L. HOM05D000314 ORTHO05D000189 2.9e-06 56.2 96 39.6
MD12G1024900 Malus domestica HOM05D000314 ORTHO05D000189 3.8e-06 55.8 91 37.4
Gohir.A09G139600 Gossypium hirsutum HOM05D000314 ORTHO05D000189 5.0e-06 55.5 114 36.0
Manes.09G007700 Manihot esculenta HOM05D000314 ORTHO05D000189 5.0e-06 55.5 77 46.8
TWI53G0987 Tripterygium wilfordii HOM05D000314 ORTHO05D000189 5.0e-06 55.5 94 41.5
FAN02G0355 Fragaria x ananassa HOM05D000314 ORTHO05D000189 6.6e-06 55.1 92 38.0
Nitab4.5_0000692g0030 Nicotiana tabacum HOM05D000314 ORTHO05D000189 6.6e-06 55.1 95 41.1
Cc06_g05900 Coffea canephora HOM05D000314 ORTHO05D000189 8.6e-06 54.7 101 36.6
MELO3C009478.2 Cucumis melo HOM05D000314 ORTHO05D000189 8.6e-06 54.7 96 39.6


User provided reference genes

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