Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00408 Nelumbo nucifera HOM05D001832 ORTHO05D276723 2.7e-71 271.9 141 100.0
MBI12_g17746_MAGBIO Magnolia biondii HOM05D001832 ORTHO05D001861 3.6e-15 85.5 96 50.0
COL.COLO4_10805 Corchorus olitorius HOM05D001832 ORTHO05D001861 7.9e-15 84.3 96 51.0
Nn3g18836 Nelumbo nucifera HOM05D001832 ORTHO05D001861 1.0e-14 84.0 96 52.1
TAR375G0483 Trochodendron aralioides HOM05D001832 ORTHO05D001861 1.4e-14 83.6 96 51.0
GSVIVG01019660001 Vitis vinifera HOM05D001832 ORTHO05D001861 1.1e-13 80.5 96 49.0
Manes.02G002200 Manihot esculenta HOM05D001832 ORTHO05D001861 4.4e-13 78.6 104 46.2
CiPaw.11G111700 Carya illinoinensis HOM05D001832 ORTHO05D001861 5.7e-13 78.2 96 47.9
Dinv05051 Davidia involucrata HOM05D001832 ORTHO05D001861 5.7e-13 78.2 93 51.6
Manes.01G002600 Manihot esculenta HOM05D001832 ORTHO05D001861 5.7e-13 78.2 104 45.2
Duzib205G1312 Durio zibethinus HOM05D001832 ORTHO05D001861 9.7e-13 77.4 96 47.9
MBI04_g35565_MAGBIO Magnolia biondii HOM05D001832 ORTHO05D001861 9.7e-13 77.4 87 48.3
Thecc.03G220100 Theobroma cacao HOM05D001832 ORTHO05D001861 1.7e-12 76.6 96 47.9
Potri.001G083400 Populus trichocarpa HOM05D001832 ORTHO05D001861 2.8e-12 75.9 97 44.3
TAR629G2501 Trochodendron aralioides HOM05D001832 ORTHO05D001861 2.8e-12 75.9 96 45.8
Dinv02262 Davidia involucrata HOM05D001832 ORTHO05D001861 3.7e-12 75.5 97 49.5
RcHm_v2.0_Chr7g0187321 Rosa chinensis HOM05D001832 ORTHO05D001861 4.8e-12 75.1 101 48.5
FAN13G0769 Fragaria x ananassa HOM05D001832 ORTHO05D001861 1.1e-11 73.9 101 47.5
MD06G1120300 Malus domestica HOM05D001832 ORTHO05D001861 1.4e-11 73.6 104 47.1
FvH4_5g10840 Fragaria vesca HOM05D001832 ORTHO05D001861 1.8e-11 73.2 101 46.5
FAN04G1073 Fragaria x ananassa HOM05D001832 ORTHO05D001861 1.8e-11 73.2 101 46.5
FAN08G0867 Fragaria x ananassa HOM05D001832 ORTHO05D001861 1.8e-11 73.2 101 46.5
FAN18G2155 Fragaria x ananassa HOM05D001832 ORTHO05D001861 1.8e-11 73.2 101 46.5
vmacro11498 Vaccinium macrocarpon HOM05D001832 ORTHO05D001861 3.1e-11 72.4 94 45.7
QL02p027800 Quercus lobata HOM05D001832 ORTHO05D001861 4.1e-11 72.0 96 44.8
Rhsim02G0252800 Rhododendron simsii HOM05D001832 ORTHO05D001861 4.1e-11 72.0 94 43.6
Atru.chr9.1869 Acer truncatum HOM05D001832 ORTHO05D001861 5.3e-11 71.6 94 41.5
Potri.003G147400 Populus trichocarpa HOM05D001832 ORTHO05D001861 5.3e-11 71.6 97 43.3
TWI60G1619 Tripterygium wilfordii HOM05D001832 ORTHO05D001861 5.3e-11 71.6 84 44.0
Duzib068G0047 Durio zibethinus HOM05D001832 ORTHO05D001861 7.0e-11 71.2 96 45.8
Actinidia04174 Actinidia chinensis HOM05D001832 ORTHO05D001861 9.1e-11 70.9 96 43.8
Medtr1g077930 Medicago truncatula HOM05D001832 ORTHO05D001861 9.1e-11 70.9 104 41.3
CSS0045802 Camellia sinensis var. sinensis HOM05D001832 ORTHO05D001861 2.6e-10 69.3 96 43.8
CSS0048243 Camellia sinensis var. sinensis HOM05D001832 ORTHO05D001861 2.6e-10 69.3 96 43.8
MD00G1139900 Malus domestica HOM05D001832 ORTHO05D001861 2.6e-10 69.3 104 44.2
Ciclev10019909m.g Citrus clementina HOM05D001832 ORTHO05D001861 3.5e-10 68.9 93 44.1
Haze_09181 Corylus avellana HOM05D001832 ORTHO05D001861 3.5e-10 68.9 96 45.8
Prupe.5G130800 Prunus persica HOM05D001832 ORTHO05D001861 3.5e-10 68.9 97 45.4
PSO063G3050 Papaver somniferum HOM05D001832 ORTHO05D001861 5.9e-10 68.2 99 42.4
PSO782G5118 Papaver somniferum HOM05D001832 ORTHO05D001861 5.9e-10 68.2 99 42.4
PGR042G2792 Punica granatum HOM05D001832 ORTHO05D001861 5.9e-10 68.2 97 42.3
VMungo0720G0034 Vigna mungo HOM05D001832 ORTHO05D001861 5.9e-10 68.2 98 40.8
Aqoxy5G04334 Aquilegia oxysepala HOM05D001832 ORTHO05D001861 7.7e-10 67.8 97 44.3
Peaxi162Scf00074g00227 Petunia axillaris HOM05D001832 ORTHO05D001861 7.7e-10 67.8 97 43.3
HanXRQChr03g0085231 Helianthus annuus HOM05D001832 ORTHO05D001861 1.0e-09 67.4 108 40.7
Phvul.L004901 Phaseolus vulgaris HOM05D001832 ORTHO05D001861 1.3e-09 67.0 98 40.8
TPR.G34819 Trifolium pratense HOM05D001832 ORTHO05D001861 1.3e-09 67.0 102 41.2
Cpa.g.c28553.2 Carica papaya HOM05D001832 ORTHO05D001861 1.7e-09 66.6 97 42.3
Duzib084G0970 Durio zibethinus HOM05D001832 ORTHO05D001861 2.2e-09 66.2 93 45.2
HanXRQChr13g0414311 Helianthus annuus HOM05D001832 ORTHO05D001861 2.2e-09 66.2 91 39.6
Lj5g0021372 Lotus japonicus HOM05D001832 ORTHO05D001861 3.8e-09 65.5 95 44.2
Sabra01G0060000 Salix brachista HOM05D001832 ORTHO05D001861 3.8e-09 65.5 97 41.2
MSTRG.2024 Avicennia marina HOM05D001832 ORTHO05D001861 5.0e-09 65.1 96 40.6
Gohir.A09G188333 Gossypium hirsutum HOM05D001832 ORTHO05D001861 5.0e-09 65.1 87 44.8
Cfa011916 Carpinus fangiana HOM05D001832 ORTHO05D001861 6.5e-09 64.7 96 43.8
MBI04_g45413_MAGBIO Magnolia biondii HOM05D001832 ORTHO05D001861 6.5e-09 64.7 74 47.3
CDE12G0968 Ceratophyllum demersum HOM05D001832 ORTHO05D001861 8.5e-09 64.3 91 41.8
Nitab4.5_0000799g0010 Nicotiana tabacum HOM05D001832 ORTHO05D001861 8.5e-09 64.3 97 39.2
Gohir.A09G188300 Gossypium hirsutum HOM05D001832 ORTHO05D001861 1.1e-08 63.9 87 43.7
CDE04G3593 Ceratophyllum demersum HOM05D001832 ORTHO05D001861 1.5e-08 63.5 91 41.8
Lalb_Chr06g0168611 Lupinus albus HOM05D001832 ORTHO05D001861 1.5e-08 63.5 100 40.0
CAN.G567.92 Capsicum annuum HOM05D001832 ORTHO05D001861 1.9e-08 63.2 90 42.2
Gohir.D09G183200 Gossypium hirsutum HOM05D001832 ORTHO05D001861 1.9e-08 63.2 87 42.5
Lalb_Chr02g0149561 Lupinus albus HOM05D001832 ORTHO05D001861 1.9e-08 63.2 100 41.0
vmacro13847 Vaccinium macrocarpon HOM05D001832 ORTHO05D001861 1.9e-08 63.2 98 42.9
Gohir.A11G018700 Gossypium hirsutum HOM05D001832 ORTHO05D001861 2.5e-08 62.8 100 41.0
Gohir.D11G018400 Gossypium hirsutum HOM05D001832 ORTHO05D001861 2.5e-08 62.8 98 41.8
Nitab4.5_0010348g0010 Nicotiana tabacum HOM05D001832 ORTHO05D001861 2.5e-08 62.8 94 38.3
Gorai.006G205500 Gossypium raimondii HOM05D001832 ORTHO05D001861 3.2e-08 62.4 87 42.5
HanXRQChr07g0192191 Helianthus annuus HOM05D001832 ORTHO05D001861 3.2e-08 62.4 87 42.5
Lj8A199T29 Lonicera japonica HOM05D001832 ORTHO05D001861 3.2e-08 62.4 96 40.6
Psat6g052880 Pisum sativum HOM05D001832 ORTHO05D001861 3.2e-08 62.4 96 40.6
VMungo1383G1018 Vigna mungo HOM05D001832 ORTHO05D001861 4.2e-08 62.0 97 39.2
Glyma.10G172600 Glycine max HOM05D001832 ORTHO05D001861 5.5e-08 61.6 99 40.4
Glyma.20G217600 Glycine max HOM05D001832 ORTHO05D001861 5.5e-08 61.6 99 40.4
Rhsim07G0077500 Rhododendron simsii HOM05D001832 ORTHO05D001861 5.5e-08 61.6 95 44.2
Gohir.A12G240500 Gossypium hirsutum HOM05D001832 ORTHO05D001861 7.2e-08 61.2 125 39.2
RhsimUnG0086800 Rhododendron simsii HOM05D001832 ORTHO05D001861 7.2e-08 61.2 95 43.2
Sabra03G0107200 Salix brachista HOM05D001832 ORTHO05D001861 7.2e-08 61.2 92 39.1
HPP92_022242 Vanilla planifolia HOM05D001832 ORTHO05D001861 7.2e-08 61.2 90 41.1
ATR0090G019 Amborella trichopoda HOM05D001832 ORTHO05D001861 9.4e-08 60.8 99 41.4
DCAR_006553 Daucus carota HOM05D001832 ORTHO05D001861 9.4e-08 60.8 91 42.9
Gohir.D12G241800 Gossypium hirsutum HOM05D001832 ORTHO05D001861 9.4e-08 60.8 87 44.8
Gorai.008G259100 Gossypium raimondii HOM05D001832 ORTHO05D001861 9.4e-08 60.8 87 44.8
Lsat_1_v5_gn_6_9340 Lactuca sativa HOM05D001832 ORTHO05D001861 9.4e-08 60.8 93 37.6
Sc01g0010740 Simmondsia chinensis HOM05D001832 ORTHO05D001861 9.4e-08 60.8 106 35.8
arahy.Tifrunner.gnm1.ann1.K44HFU Arachis hypogaea HOM05D001832 ORTHO05D001861 1.2e-07 60.5 100 40.0
ECA240G2112 Erigeron canadensis HOM05D001832 ORTHO05D001861 1.2e-07 60.5 89 41.6
Lsat_1_v5_gn_6_81860 Lactuca sativa HOM05D001832 ORTHO05D001861 1.2e-07 60.5 109 36.7
Nitab4.5_0002720g0050 Nicotiana tabacum HOM05D001832 ORTHO05D001861 1.2e-07 60.5 90 41.1
Nitab4.5_0026365g0010 Nicotiana tabacum HOM05D001832 ORTHO05D001861 1.2e-07 60.5 90 41.1
Ca_09951_v3 Cicer arietinum L. HOM05D001832 ORTHO05D001861 1.6e-07 60.1 87 44.8
Hma1.2p1_0456F.1_g156700 Hydrangea macrophylla HOM05D001832 ORTHO05D001861 2.1e-07 59.7 95 45.3
Cc08_g16800 Coffea canephora HOM05D001832 ORTHO05D001861 4.7e-07 58.5 95 40.0
PGSC0003DMG400012117 Solanum tuberosum HOM05D001832 ORTHO05D001861 8.0e-07 57.8 90 40.0
AUR62007061 Chenopodium quinoa HOM05D001832 ORTHO05D001861 1.0e-06 57.4 99 41.4
Eucgr.E01050 Eucalyptus grandis HOM05D001832 ORTHO05D001861 1.0e-06 57.4 106 39.6
CSS0026639 Camellia sinensis var. sinensis HOM05D001832 ORTHO05D001861 1.8e-06 56.6 95 40.0
CANSAT21G2545 Cannabis sativa HOM05D001832 ORTHO05D001861 1.8e-06 56.6 105 38.1
PGR031G1543 Punica granatum HOM05D001832 ORTHO05D001861 2.3e-06 56.2 95 42.1
AUR62019924 Chenopodium quinoa HOM05D001832 ORTHO05D001861 4.0e-06 55.5 99 39.4
Sc22g0004680 Simmondsia chinensis HOM05D001832 ORTHO05D001861 4.0e-06 55.5 87 39.1
SGA_v2.0_scaffold104G30232 Striga asiatica HOM05D001832 ORTHO05D001861 4.0e-06 55.5 98 37.8
EL10Ac5g12418 Beta vulgaris HOM05D001832 ORTHO05D001861 6.7e-06 54.7 98 40.8
Gorai.007G019700 Gossypium raimondii HOM05D001832 ORTHO05D001861 8.8e-06 54.3 43 62.8
Hma1.2p1_0436F.1_g152810 Hydrangea macrophylla HOM05D001832 ORTHO05D001861 8.8e-06 54.3 108 39.8
Solyc08g008610.3 Solanum lycopersicum HOM05D001832 ORTHO05D001861 8.8e-06 54.3 99 36.4


User provided reference genes

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