Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00382 Nelumbo nucifera HOM05D000372 ORTHO05D003436 1.6e-82 309.3 150 100.0
Nn8g40299 Nelumbo nucifera HOM05D000372 ORTHO05D003436 1.1e-62 243.4 126 93.7
TAR383G1081 Trochodendron aralioides HOM05D000372 ORTHO05D003436 5.6e-43 177.9 126 72.2
Dinv06101 Davidia involucrata HOM05D000372 ORTHO05D003436 1.6e-34 149.8 126 61.9
CSS0030725 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 1.4e-33 146.7 126 57.9
Atru.chr7.2608 Acer truncatum HOM05D000372 ORTHO05D003436 1.5e-32 143.3 131 57.3
Ciclev10010162m.g Citrus clementina HOM05D000372 ORTHO05D003436 2.0e-32 142.9 126 59.5
Actinidia13068 Actinidia chinensis HOM05D000372 ORTHO05D003436 2.6e-32 142.5 126 57.9
Actinidia23121 Actinidia chinensis HOM05D000372 ORTHO05D003436 2.6e-32 142.5 126 57.9
CSS0002412 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 3.4e-32 142.1 126 56.3
Duzib187G1714 Durio zibethinus HOM05D000372 ORTHO05D003436 4.5e-32 141.7 126 58.7
CSS0028082 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.9e-31 139.0 126 56.3
CSS0035630 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.9e-31 139.0 126 56.3
PSO063G4267 Papaver somniferum HOM05D000372 ORTHO05D003436 4.2e-30 135.2 130 59.2
Eucgr.C04019 Eucalyptus grandis HOM05D000372 ORTHO05D003436 7.1e-30 134.4 126 57.1
Potri.018G011400 Populus trichocarpa HOM05D000372 ORTHO05D003436 7.1e-30 134.4 130 56.2
QL02p017417 Quercus lobata HOM05D000372 ORTHO05D003436 1.2e-29 133.7 126 58.7
TWI63G0489 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 1.2e-29 133.7 130 56.2
Dinv19797 Davidia involucrata HOM05D000372 ORTHO05D003436 1.6e-29 133.3 126 55.6
Sabra06G0210300 Salix brachista HOM05D000372 ORTHO05D003436 2.1e-29 132.9 131 57.3
Haze_18342 Corylus avellana HOM05D000372 ORTHO05D003436 2.7e-29 132.5 128 55.5
Nitab4.5_0000502g0160 Nicotiana tabacum HOM05D000372 ORTHO05D003436 2.7e-29 132.5 125 52.8
PSO782G1259 Papaver somniferum HOM05D000372 ORTHO05D003436 2.7e-29 132.5 130 58.5
Cpa.g.sc23.45 Carica papaya HOM05D000372 ORTHO05D003436 3.5e-29 132.1 127 55.9
Potri.006G270500 Populus trichocarpa HOM05D000372 ORTHO05D003436 3.5e-29 132.1 130 56.2
Peaxi162Scf00288g01010 Petunia axillaris HOM05D000372 ORTHO05D003436 7.9e-29 131.0 125 54.4
TWI32G0796 Tripterygium wilfordii HOM05D000372 ORTHO05D003436 7.9e-29 131.0 130 56.2
Manes.16G133700 Manihot esculenta HOM05D000372 ORTHO05D003436 1.0e-28 130.6 127 58.3
Sabra18G0012300 Salix brachista HOM05D000372 ORTHO05D003436 1.3e-28 130.2 130 55.4
Solyc08g068960.3 Solanum lycopersicum HOM05D000372 ORTHO05D003436 1.3e-28 130.2 125 52.0
Sopen08g022620 Solanum pennellii HOM05D000372 ORTHO05D003436 1.3e-28 130.2 125 52.0
PGSC0003DMG400029542 Solanum tuberosum HOM05D000372 ORTHO05D003436 1.3e-28 130.2 125 52.0
CAN.G808.7 Capsicum annuum HOM05D000372 ORTHO05D003436 2.3e-28 129.4 125 51.2
Duzib150G0268 Durio zibethinus HOM05D000372 ORTHO05D003436 3.0e-28 129.0 126 55.6
Prupe.1G400900 Prunus persica HOM05D000372 ORTHO05D003436 3.9e-28 128.6 126 54.0
COL.COLO4_19011 Corchorus olitorius HOM05D000372 ORTHO05D003436 5.1e-28 128.3 130 56.2
Gohir.A05G062700 Gossypium hirsutum HOM05D000372 ORTHO05D003436 5.1e-28 128.3 127 55.1
Cfa017850 Carpinus fangiana HOM05D000372 ORTHO05D003436 1.1e-27 127.1 126 54.8
Glyma.U003300 Glycine max HOM05D000372 ORTHO05D003436 1.5e-27 126.7 126 54.0
Gorai.009G066000 Gossypium raimondii HOM05D000372 ORTHO05D003436 2.5e-27 125.9 127 54.3
Nitab4.5_0006884g0010 Nicotiana tabacum HOM05D000372 ORTHO05D003436 3.3e-27 125.6 125 51.2
Gohir.D05G065200 Gossypium hirsutum HOM05D000372 ORTHO05D003436 5.6e-27 124.8 127 53.5
CiPaw.16G070900 Carya illinoinensis HOM05D000372 ORTHO05D003436 7.4e-27 124.4 126 54.0
FAN27G2462 Fragaria x ananassa HOM05D000372 ORTHO05D003436 7.4e-27 124.4 127 55.9
FvH4_2g37120 Fragaria vesca HOM05D000372 ORTHO05D003436 9.6e-27 124.0 127 55.9
MBI14_g24282_MAGBIO Magnolia biondii HOM05D000372 ORTHO05D003436 1.3e-26 123.6 126 55.6
CSS0018460 Camellia sinensis var. sinensis HOM05D000372 ORTHO05D003436 2.1e-26 122.9 126 51.6
FAN15G3394 Fragaria x ananassa HOM05D000372 ORTHO05D003436 3.7e-26 122.1 127 55.9
Duzib168G1416 Durio zibethinus HOM05D000372 ORTHO05D003436 4.8e-26 121.7 126 52.4
Rhsim07G0169300 Rhododendron simsii HOM05D000372 ORTHO05D003436 4.8e-26 121.7 126 52.4
Glyma.04G058400 Glycine max HOM05D000372 ORTHO05D003436 6.2e-26 121.3 126 53.2
FAN20G1896 Fragaria x ananassa HOM05D000372 ORTHO05D003436 1.1e-25 120.6 127 55.1
Lj7C743T9 Lonicera japonica HOM05D000372 ORTHO05D003436 1.4e-25 120.2 126 50.8
Aqoxy7G03181 Aquilegia oxysepala HOM05D000372 ORTHO05D003436 1.8e-25 119.8 126 56.3
vmacro05111 Vaccinium macrocarpon HOM05D000372 ORTHO05D003436 3.1e-25 119.0 127 52.0
MD08G1047400 Malus domestica HOM05D000372 ORTHO05D003436 1.5e-24 116.7 130 50.8
RcHm_v2.0_Chr6g0304671 Rosa chinensis HOM05D000372 ORTHO05D003436 4.5e-24 115.2 127 52.8
DCAR_003039 Daucus carota HOM05D000372 ORTHO05D003436 5.8e-24 114.8 135 45.2
VMungo0647G1491 Vigna mungo HOM05D000372 ORTHO05D003436 1.0e-23 114.0 128 51.6
Manes.03G005600 Manihot esculenta HOM05D000372 ORTHO05D003436 1.3e-23 113.6 130 51.5
Phvul.001G043600 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 1.3e-23 113.6 126 50.8
Ca_13081_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 1.7e-23 113.2 128 52.3
Oeu023248.1 Olea europaea HOM05D000372 ORTHO05D003436 2.2e-23 112.8 126 50.8
Gohir.A05G063000 Gossypium hirsutum HOM05D000372 ORTHO05D003436 3.8e-23 112.1 126 49.2
Gohir.D05G065500 Gossypium hirsutum HOM05D000372 ORTHO05D003436 3.8e-23 112.1 126 49.2
VMungo1309G2648 Vigna mungo HOM05D000372 ORTHO05D003436 4.9e-23 111.7 126 49.2
Gorai.009G066300 Gossypium raimondii HOM05D000372 ORTHO05D003436 8.4e-23 110.9 126 48.4
Phvul.009G084900 Phaseolus vulgaris HOM05D000372 ORTHO05D003436 3.2e-22 109.0 126 48.4
Cc08_g06200 Coffea canephora HOM05D000372 ORTHO05D003436 1.2e-21 107.1 126 48.4
Sed0000787 Sechium edule HOM05D000372 ORTHO05D003436 4.6e-21 105.1 123 51.2
CANSAT25G2139 Cannabis sativa HOM05D000372 ORTHO05D003436 7.9e-21 104.4 121 51.2
Sc09g0010830 Simmondsia chinensis HOM05D000372 ORTHO05D003436 7.9e-21 104.4 127 47.2
Thecc.09G009700 Theobroma cacao HOM05D000372 ORTHO05D003436 1.0e-20 104.0 91 62.6
Lj1g0015187 Lotus japonicus HOM05D000372 ORTHO05D003436 1.3e-20 103.6 125 49.6
Hma1.2p1_0102F.1_g049740 Hydrangea macrophylla HOM05D000372 ORTHO05D003436 1.8e-20 103.2 137 49.6
arahy.Tifrunner.gnm1.ann1.2363PW Arachis hypogaea HOM05D000372 ORTHO05D003436 2.3e-20 102.8 124 47.6
Glyma.14G105400 Glycine max HOM05D000372 ORTHO05D003436 3.0e-20 102.4 128 49.2
SalBow4G3322 Salvia bowleyana HOM05D000372 ORTHO05D003436 3.0e-20 102.4 129 47.3
MD15G1046500 Malus domestica HOM05D000372 ORTHO05D003436 6.7e-20 101.3 126 46.0
Psat6g023640 Pisum sativum HOM05D000372 ORTHO05D003436 8.7e-20 100.9 127 48.0
THA.LOC104819942 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 8.7e-20 100.9 126 50.8
Lj5g0022261 Lotus japonicus HOM05D000372 ORTHO05D003436 1.1e-19 100.5 127 49.6
Lalb_Chr14g0375411 Lupinus albus HOM05D000372 ORTHO05D003436 1.1e-19 100.5 133 49.6
arahy.Tifrunner.gnm1.ann1.IKLL4G Arachis hypogaea HOM05D000372 ORTHO05D003436 2.5e-19 99.4 124 46.8
MSTRG.25803 Avicennia marina HOM05D000372 ORTHO05D003436 2.5e-19 99.4 125 46.4
Glyma.17G220800 Glycine max HOM05D000372 ORTHO05D003436 3.3e-19 99.0 126 47.6
Oeu008769.1 Olea europaea HOM05D000372 ORTHO05D003436 3.3e-19 99.0 84 61.9
ClCG05G016010 Citrullus lanatus HOM05D000372 ORTHO05D003436 4.3e-19 98.6 125 48.8
TPR.G38926 Trifolium pratense HOM05D000372 ORTHO05D003436 7.4e-19 97.8 128 46.9
Migut.E01430 Erythranthe guttata HOM05D000372 ORTHO05D003436 1.3e-18 97.1 124 49.2
Sed0022125 Sechium edule HOM05D000372 ORTHO05D003436 2.2e-18 96.3 126 48.4
Medtr1g013360 Medicago truncatula HOM05D000372 ORTHO05D003436 1.4e-17 93.6 121 47.9
PGR044G0422 Punica granatum HOM05D000372 ORTHO05D003436 1.8e-17 93.2 127 46.5
TPR.G21426 Trifolium pratense HOM05D000372 ORTHO05D003436 2.4e-17 92.8 128 44.5
arahy.Tifrunner.gnm1.ann1.54Q5ZL Arachis hypogaea HOM05D000372 ORTHO05D003436 4.1e-17 92.0 129 45.0
SalBow8G1746 Salvia bowleyana HOM05D000372 ORTHO05D003436 6.9e-17 91.3 138 47.1
SalBow8G4869 Salvia bowleyana HOM05D000372 ORTHO05D003436 6.9e-17 91.3 138 47.1
arahy.Tifrunner.gnm1.ann1.672M4G Arachis hypogaea HOM05D000372 ORTHO05D003436 9.0e-17 90.9 129 45.0
MELO3C016937.2 Cucumis melo HOM05D000372 ORTHO05D003436 1.2e-16 90.5 113 47.8
CsaV3_4G036290 Cucumis sativus L. HOM05D000372 ORTHO05D003436 3.4e-16 89.0 139 43.2
Carub.0006s0919 Capsella rubella HOM05D000372 ORTHO05D003436 2.2e-15 86.3 124 43.5
AUR62037701 Chenopodium quinoa HOM05D000372 ORTHO05D003436 2.2e-15 86.3 119 43.7
THA.LOC104803327 Tarenaya hassleriana HOM05D000372 ORTHO05D003436 2.2e-15 86.3 125 42.4
AUR62020299 Chenopodium quinoa HOM05D000372 ORTHO05D003436 2.9e-15 85.9 98 46.9
Aa31LG3G16390 Aethionema arabicum HOM05D000372 ORTHO05D003436 5.0e-15 85.1 105 45.7
ATR0580G441 Amborella trichopoda HOM05D000372 ORTHO05D003436 8.5e-15 84.3 127 40.2
Thhalv10012606m.g Eutrema salsugineum HOM05D000372 ORTHO05D003436 1.1e-14 84.0 126 42.1
Medtr3g105590 Medicago truncatula HOM05D000372 ORTHO05D003436 1.1e-14 84.0 128 41.4
BcaB08g37314 Brassica carinata HOM05D000372 ORTHO05D003436 1.4e-14 83.6 124 42.7
Migut.A00416 Erythranthe guttata HOM05D000372 ORTHO05D003436 3.2e-14 82.4 90 51.1
Ca_15798_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 5.5e-14 81.6 105 46.7
AL6G21260 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 7.2e-14 81.3 123 42.3
GSVIVG01033164001 Vitis vinifera HOM05D000372 ORTHO05D003436 7.2e-14 81.3 70 58.6
A10p26890 Brassica napus HOM05D000372 ORTHO05D003436 9.3e-14 80.9 124 42.7
BraA10t44741Z Brassica rapa HOM05D000372 ORTHO05D003436 9.3e-14 80.9 124 43.5
Sp6g32740 Schrenkiella parvula HOM05D000372 ORTHO05D003436 1.2e-13 80.5 124 41.1
TPR.G38882 Trifolium pratense HOM05D000372 ORTHO05D003436 1.2e-13 80.5 80 53.8
A03p04730 Brassica napus HOM05D000372 ORTHO05D003436 1.6e-13 80.1 125 42.4
BcaB01g06275 Brassica carinata HOM05D000372 ORTHO05D003436 2.1e-13 79.7 126 42.9
BcaC04g19290 Brassica carinata HOM05D000372 ORTHO05D003436 2.1e-13 79.7 124 42.7
BraA03t09813Z Brassica rapa HOM05D000372 ORTHO05D003436 2.1e-13 79.7 125 42.4
CARHR202600 Cardamine hirsuta HOM05D000372 ORTHO05D003436 2.1e-13 79.7 135 40.7
ECA240G4325 Erigeron canadensis HOM05D000372 ORTHO05D003436 2.1e-13 79.7 136 38.2
Sc23g0006190 Simmondsia chinensis HOM05D000372 ORTHO05D003436 2.7e-13 79.3 93 46.2
BolC9t59429H Brassica oleracea HOM05D000372 ORTHO05D003436 6.1e-13 78.2 123 42.3
AT5G10720 Arabidopsis thaliana HOM05D000372 ORTHO05D003436 7.9e-13 77.8 124 41.9
BolC2t06420H Brassica oleracea HOM05D000372 ORTHO05D003436 7.9e-13 77.8 142 38.0
BcaB01g05503 Brassica carinata HOM05D000372 ORTHO05D003436 1.0e-12 77.4 125 39.2
C03p05430 Brassica napus HOM05D000372 ORTHO05D003436 1.0e-12 77.4 125 39.2
BolC3t13054H Brassica oleracea HOM05D000372 ORTHO05D003436 1.0e-12 77.4 125 39.2
C09p66090 Brassica napus HOM05D000372 ORTHO05D003436 1.4e-12 77.0 124 41.9
Sp2g22540 Schrenkiella parvula HOM05D000372 ORTHO05D003436 1.4e-12 77.0 124 41.9
BcaB05g21500 Brassica carinata HOM05D000372 ORTHO05D003436 1.8e-12 76.6 78 52.6
ECA246G0477 Erigeron canadensis HOM05D000372 ORTHO05D003436 2.3e-12 76.3 121 39.7
EL10Ac2g02429 Beta vulgaris HOM05D000372 ORTHO05D003436 3.0e-12 75.9 119 40.3
BcaC03g13326 Brassica carinata HOM05D000372 ORTHO05D003436 3.0e-12 75.9 78 51.3
C02p04600 Brassica napus HOM05D000372 ORTHO05D003436 3.0e-12 75.9 78 51.3
A02p00610 Brassica napus HOM05D000372 ORTHO05D003436 6.7e-12 74.7 104 44.2
BraA02t05044Z Brassica rapa HOM05D000372 ORTHO05D003436 6.7e-12 74.7 104 44.2
Sp2g06120 Schrenkiella parvula HOM05D000372 ORTHO05D003436 1.9e-11 73.2 67 53.7
Ah.10g025030 Amaranthus hybridus HOM05D000372 ORTHO05D003436 2.5e-11 72.8 105 41.9
AL6G21200 Arabidopsis lyrata HOM05D000372 ORTHO05D003436 2.5e-11 72.8 67 53.7
SGA_v2.0_scaffold121G33025 Striga asiatica HOM05D000372 ORTHO05D003436 2.5e-11 72.8 89 52.8
Lsat_1_v5_gn_3_25440 Lactuca sativa HOM05D000372 ORTHO05D003436 4.3e-11 72.0 126 34.9
Lsat_1_v5_gn_5_62200 Lactuca sativa HOM05D000372 ORTHO05D003436 9.7e-11 70.9 99 43.4
HanXRQChr06g0174111 Helianthus annuus HOM05D000372 ORTHO05D003436 1.3e-10 70.5 122 41.0
Zm00001eb389570 Zea mays HOM05D000372 ORTHO05D003436 1.3e-10 70.5 126 41.3
Zm00001eb274910 Zea mays HOM05D000372 ORTHO05D003436 2.2e-10 69.7 125 40.0
CARHR155340 Cardamine hirsuta HOM05D000372 ORTHO05D003436 2.8e-10 69.3 67 52.2
Hund25586 Selenicereus undatus HOM05D000372 ORTHO05D003436 8.2e-10 67.8 117 39.3
HanXRQChr03g0082521 Helianthus annuus HOM05D000372 ORTHO05D003436 1.1e-09 67.4 102 40.2
Psat5g033760 Pisum sativum HOM05D000372 ORTHO05D003436 1.4e-09 67.0 132 34.8
HPP92_026133 Vanilla planifolia HOM05D000372 ORTHO05D003436 2.4e-09 66.2 89 47.2
Oeu008770.2 Olea europaea HOM05D000372 ORTHO05D003436 4.5e-08 62.0 74 43.2
Ca_15783_v3 Cicer arietinum L. HOM05D000372 ORTHO05D003436 8.5e-07 57.8 75 44.0
Migut.E00913 Erythranthe guttata HOM05D000372 ORTHO05D003436 1.4e-06 57.0 69 44.9
SEGI_09005 Sequoiadendron giganteum HOM05D000372 ORTHO05D003436 1.9e-06 56.6 108 38.0
Os06g0654300 Oryza sativa ssp. japonica HOM05D000372 ORTHO05D003436 3.2e-06 55.8 121 39.7


User provided reference genes

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