Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.9e-244 849.0 504 100.0
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.1e-171 606.3 507 75.7
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.8e-171 605.9 495 78.2
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 4.3e-164 582.0 506 75.1
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 4.4e-156 555.4 482 69.5
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.0e-153 546.6 482 69.1
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.7e-153 544.7 459 76.9
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 1.7e-152 543.5 436 74.5
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.2e-152 543.1 456 76.1
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 5.0e-152 542.0 482 68.5
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.1e-151 540.8 488 72.5
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.4e-151 540.4 492 71.1
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 1.9e-151 540.0 522 67.8
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 4.2e-151 538.9 479 67.6
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 9.4e-151 537.7 475 69.5
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.6e-150 537.0 473 74.0
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 3.6e-150 535.8 478 67.4
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 3.6e-150 535.8 498 68.1
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 4.7e-150 535.4 446 71.7
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 2.3e-149 533.1 493 72.2
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 5.2e-149 531.9 479 71.6
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 8.8e-149 531.2 480 66.9
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 1.1e-148 530.8 470 68.3
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 2.0e-148 530.0 531 67.0
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 2.0e-148 530.0 477 66.9
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.3e-148 529.3 526 68.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 3.3e-148 529.3 501 71.7
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 5.7e-148 528.5 511 65.4
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 5.7e-148 528.5 517 70.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 5.7e-148 528.5 481 72.3
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 9.7e-148 527.7 459 75.4
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 9.7e-148 527.7 435 73.1
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 2.8e-147 526.2 480 66.7
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 4.8e-147 525.4 450 75.6
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 6.3e-147 525.0 472 73.5
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 1.1e-146 524.2 471 68.2
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 1.4e-146 523.9 466 72.7
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 1.4e-146 523.9 496 70.2
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 2.4e-146 523.1 463 68.3
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.1e-146 522.7 481 73.2
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 9.1e-146 521.2 470 67.7
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 9.1e-146 521.2 514 66.1
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-145 520.8 482 65.8
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-145 520.8 482 69.5
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-145 520.8 482 71.8
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 1.6e-145 520.4 392 83.2
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.6e-145 519.6 450 73.3
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 3.5e-145 519.2 498 70.3
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.5e-145 519.2 451 73.8
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.5e-145 518.8 481 71.3
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 7.7e-145 518.1 487 69.4
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 1.0e-144 517.7 500 61.4
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 1.3e-144 517.3 522 68.6
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.9e-144 516.2 487 69.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 3.8e-144 515.8 506 69.8
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 3.8e-144 515.8 502 70.5
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 6.5e-144 515.0 479 71.0
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.9e-143 513.5 474 66.5
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 7.2e-143 511.5 465 65.4
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 1.6e-142 510.4 494 64.4
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.7e-142 508.8 490 58.6
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 8.0e-142 508.1 483 71.2
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.0e-141 507.7 477 66.9
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.2e-141 505.4 513 62.4
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 6.7e-141 505.0 406 72.4
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 6.7e-141 505.0 489 67.5
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 9.7e-140 501.1 489 68.3
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.7e-139 500.4 467 69.6
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.7e-139 499.2 547 63.4
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.8e-138 496.9 381 76.6
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 3.1e-138 496.1 457 69.4
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 7.0e-138 495.0 568 54.2
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 7.0e-138 495.0 482 68.3
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.2e-137 494.2 472 66.7
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.2e-137 494.2 452 67.9
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 5.9e-137 491.9 511 64.2
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.9e-137 491.9 477 69.6
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.3e-136 490.7 444 67.1
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 5.0e-136 488.8 460 66.7
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.5e-135 487.3 471 68.4
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.5e-135 487.3 471 68.4
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-135 486.9 495 67.5
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.5e-135 486.5 468 69.0
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 5.5e-135 485.3 501 64.9
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.6e-134 483.8 450 70.7
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.7e-134 483.0 477 67.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 3.6e-134 482.6 466 68.0
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 3.6e-134 482.6 466 68.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 4.7e-134 482.3 466 68.2
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.0e-133 481.1 442 72.2
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.8e-133 480.3 518 66.0
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 2.3e-133 479.9 522 64.6
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.1e-130 471.1 489 56.9
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.8e-130 470.3 480 62.9
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 3.1e-130 469.5 506 65.8
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 4.1e-130 469.2 454 65.6
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.4e-130 468.8 475 67.6
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 9.1e-130 468.0 402 70.6
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.0e-128 462.2 479 67.2
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 6.5e-128 461.8 355 72.4
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-127 460.7 479 67.0
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.0e-125 454.5 495 65.5
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 1.0e-125 454.5 479 65.8
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.3e-125 453.4 496 65.1
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.7e-123 447.2 435 70.3
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 3.7e-123 446.0 480 65.6
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 9.2e-122 441.4 479 64.5
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 3.5e-121 439.5 470 62.1
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.3e-120 437.6 402 71.4
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 2.5e-119 433.3 413 66.1
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.4e-117 427.6 464 64.9
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 2.6e-116 423.3 476 59.2
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.4e-109 401.0 393 72.5
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.1e-109 399.8 429 65.5
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 2.6e-108 396.7 482 56.4
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 5.8e-108 395.6 484 60.1
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.4e-106 391.0 491 50.9
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.6e-102 377.5 328 69.2
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 7.5e-100 368.6 444 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.1e-98 364.8 391 61.6
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.3e-95 353.2 355 64.5
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 2.1e-89 334.0 343 70.3
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 4.6e-89 332.8 601 45.1
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 8.6e-88 328.6 351 71.8
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 6.2e-86 322.4 278 59.4
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 9.0e-85 318.5 354 56.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 6.4e-83 312.4 536 47.6
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 2.3e-80 303.9 474 48.7
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 1.3e-75 288.1 240 67.1
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.0e-72 276.9 287 73.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 4.2e-66 256.5 376 42.6
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 7.9e-49 199.1 131 77.9
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 3.3e-47 193.7 152 63.2
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 4.8e-46 189.9 180 59.4
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.2e-43 181.0 141 61.7
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-43 180.6 141 61.7
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.9e-42 177.9 141 61.7
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.1e-37 162.2 168 53.0
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.3e-37 159.8 134 59.0
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.9e-37 159.5 134 58.2
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.2e-35 154.5 95 85.3
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-30 138.7 128 56.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-30 138.3 171 46.2
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 8.2e-30 136.0 106 64.2
Nn3g16272 Nelumbo nucifera HOM05D004623 ORTHO05D005100 3.2e-26 124.0 84 77.4
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 2.1e-25 121.3 487 26.3
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-25 119.8 75 72.0
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 2.6e-23 114.4 90 65.6
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 1.0e-19 102.4 208 35.6
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.7e-17 94.4 55 78.2
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.7e-15 86.7 55 72.7
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.5e-10 70.1 71 60.6
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 7.2e-10 69.7 68 58.8
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.6e-09 67.4 52 71.2
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.0e-08 64.3 123 39.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 4.0e-08 63.9 57 63.2
Nn2g10258 Nelumbo nucifera HOM05D004623 ORTHO05D005100 1.3e-06 58.9 38 71.1


User provided reference genes

Program Settings