Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 5.5e-62 240.7 116 100.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 7.4e-43 177.2 95 93.7
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 4.4e-35 151.4 95 81.1
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.1e-33 145.2 96 78.1
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 5.9e-32 141.0 103 70.9
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.3e-31 139.8 117 65.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.9e-31 138.7 95 73.7
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.9e-31 138.7 104 69.2
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 8.5e-31 137.1 117 64.1
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 9.4e-30 133.7 94 74.5
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 5.2e-28 127.9 98 67.3
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 5.2e-28 127.9 111 63.1
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 8.8e-28 127.1 95 71.6
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 5.7e-27 124.4 99 66.7
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 5.7e-27 124.4 100 65.0
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 9.7e-27 123.6 96 70.8
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 2.8e-26 122.1 96 65.6
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 4.8e-26 121.3 98 65.3
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 4.8e-26 121.3 98 65.3
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 6.3e-26 120.9 96 64.6
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.8e-25 119.4 103 65.0
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.8e-25 119.4 96 64.6
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 7.0e-25 117.5 96 63.5
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 7.0e-25 117.5 96 63.5
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 1.2e-24 116.7 97 64.9
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.2e-24 116.7 93 66.7
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 1.6e-24 116.3 86 72.1
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 2.0e-24 115.9 100 63.0
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.6e-24 115.5 110 57.3
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 4.5e-24 114.8 95 64.2
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.5e-24 114.8 96 62.5
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 4.5e-24 114.8 97 63.9
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 7.7e-24 114.0 99 64.6
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.0e-23 113.6 106 58.5
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.2e-23 112.5 96 61.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 2.2e-23 112.5 99 60.6
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 2.9e-23 112.1 103 59.2
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 2.9e-23 112.1 95 62.1
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 3.8e-23 111.7 95 63.2
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 5.0e-23 111.3 96 62.5
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.5e-23 110.9 111 60.4
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 8.5e-23 110.5 94 61.7
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.1e-22 110.2 98 63.3
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.9e-22 109.4 101 60.4
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.2e-22 108.2 107 56.1
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 5.5e-22 107.8 93 64.5
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 5.5e-22 107.8 105 57.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 7.2e-22 107.5 100 59.0
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 7.2e-22 107.5 101 59.4
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 9.4e-22 107.1 98 59.2
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 2.1e-21 105.9 102 59.8
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 2.7e-21 105.5 99 60.6
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.7e-21 105.5 102 57.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 3.6e-21 105.1 97 56.7
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 4.7e-21 104.8 103 57.3
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.8e-20 102.8 101 54.5
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.0e-20 102.1 102 53.9
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 3.0e-20 102.1 97 55.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 4.0e-20 101.7 94 55.3
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.2e-20 101.3 102 54.9
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 6.8e-20 100.9 92 59.8
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 6.8e-20 100.9 102 53.9
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 6.8e-20 100.9 111 54.1
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.0e-19 99.4 102 53.9
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 2.6e-19 99.0 96 58.3
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.6e-19 99.0 101 57.4
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 2.6e-19 99.0 114 50.0
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 3.4e-19 98.6 105 55.2
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 2.8e-18 95.5 124 45.2
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.8e-17 92.8 105 51.4
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 4.1e-17 91.7 104 51.9
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 4.1e-17 91.7 101 52.5
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 7.0e-17 90.9 105 52.4
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 1.2e-16 90.1 111 47.7
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.2e-16 90.1 114 46.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.2e-16 90.1 98 53.1
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 4.5e-16 88.2 46 87.0
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 4.5e-16 88.2 98 52.0
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 5.9e-16 87.8 93 49.5
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.3e-15 86.7 121 42.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 8.5e-15 84.0 108 45.4
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 2.5e-14 82.4 89 56.2
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 2.5e-14 82.4 117 44.4
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.2e-14 82.0 113 45.1
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.6e-13 79.7 109 43.1
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.6e-13 79.7 109 43.1
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.6e-13 79.7 109 43.1
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 2.1e-13 79.3 110 42.7
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 3.6e-13 78.6 109 43.1
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 3.6e-13 78.6 109 43.1
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 3.6e-13 78.6 107 42.1
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 6.1e-13 77.8 146 41.1
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.0e-12 77.0 68 58.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.0e-12 75.1 89 52.8
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 8.8e-12 73.9 118 41.5
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.0e-11 72.8 40 77.5
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 4.4e-11 71.6 110 40.0
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.5e-11 70.9 65 60.0
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 2.8e-10 68.9 131 35.9
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 6.3e-10 67.8 127 37.0
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 7.7e-08 60.8 70 51.4
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.9e-07 58.9 93 43.0
Aqoxy7G02283 Aquilegia oxysepala HOM05D005847 ORTHO05D003213 3.3e-06 55.5 35 71.4


User provided reference genes

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