Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00303 Nelumbo nucifera HOM05D003337 ORTHO05D003808 6.5e-14 79.3 36 100.0
Atru.chr7.2458 Acer truncatum HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
CiPaw.07G224800 Carya illinoinensis HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Gohir.A05G055900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Prupe.1G482800 Prunus persica HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 8.0e-12 72.4 36 91.7
Lalb_Chr08g0244181 Lupinus albus HOM05D003337 ORTHO05D003808 1.0e-11 72.0 36 88.9
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 1.0e-11 72.0 36 88.9
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 1.0e-11 72.0 36 88.9
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 1.8e-11 71.2 36 88.9
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.8e-11 71.2 36 88.9
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.8e-11 71.2 36 88.9
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 1.8e-11 71.2 36 88.9
Manes.03G013300 Manihot esculenta HOM05D003337 ORTHO05D003808 1.8e-11 71.2 36 88.9
TAR636G2033 Trochodendron aralioides HOM05D003337 ORTHO05D003808 1.8e-11 71.2 36 88.9
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 88.9
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 86.1
CANSAT25G2205 Cannabis sativa HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 88.9
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 88.9
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 86.1
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 86.1
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 88.9
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 86.1
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 88.9
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 88.9
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 2.3e-11 70.9 36 86.1
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 3.0e-11 70.5 36 88.9
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 3.0e-11 70.5 36 86.1
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 3.0e-11 70.5 36 86.1
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 4.0e-11 70.1 36 86.1
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 4.0e-11 70.1 36 86.1
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 5.2e-11 69.7 36 83.3
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 6.8e-11 69.3 36 88.9
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 6.8e-11 69.3 36 88.9
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 6.8e-11 69.3 36 88.9
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 6.8e-11 69.3 36 88.9
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 6.8e-11 69.3 36 88.9
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 6.8e-11 69.3 36 88.9
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 8.8e-11 68.9 36 88.9
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 8.8e-11 68.9 36 88.9
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 8.8e-11 68.9 36 88.9
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 1.2e-10 68.6 36 80.6
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 1.2e-10 68.6 36 80.6
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
AT2G25320 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BcaC07g40870 Brassica carinata HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
A09p55690 Brassica napus HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
C04p55320 Brassica napus HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
C08p38690 Brassica napus HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BolC4t27068H Brassica oleracea HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BolC8t51439H Brassica oleracea HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
CARHR116200 Cardamine hirsuta HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 86.1
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 80.6
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 88.9
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 88.9
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 1.5e-10 68.2 36 83.3
BcaC02g08354 Brassica carinata HOM05D003337 ORTHO05D003808 2.0e-10 67.8 34 85.3
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 2.0e-10 67.8 36 83.3
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 2.0e-10 67.8 36 80.6
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.6e-10 67.4 36 80.6
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 3.4e-10 67.0 36 83.3
SEGI_27941 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 4.4e-10 66.6 36 83.3
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 4.4e-10 66.6 36 83.3
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 5.7e-10 66.2 36 80.6
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 5.7e-10 66.2 36 80.6
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 5.7e-10 66.2 36 83.3
SEGI_27956 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 7.5e-10 65.9 36 83.3
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 9.8e-10 65.5 36 80.6
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 9.8e-10 65.5 36 80.6
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 9.8e-10 65.5 36 80.6
Thhalv10000009m.g Eutrema salsugineum HOM05D003337 ORTHO05D003808 1.3e-09 65.1 36 80.6
AT2G25330 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 1.7e-09 64.7 36 77.8
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 1.7e-09 64.7 36 80.6
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 2.2e-09 64.3 36 77.8
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 2.8e-09 63.9 36 80.6
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 2.8e-09 63.9 36 77.8
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 2.8e-09 63.9 36 80.6
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 3.7e-09 63.5 36 77.8
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 4.8e-09 63.2 36 77.8
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 8.3e-09 62.4 36 83.3
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 8.3e-09 62.4 36 80.6
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 1.8e-08 61.2 36 77.8
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.4e-08 60.8 36 77.8
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.4e-08 60.8 36 77.8
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.4e-08 60.8 36 77.8
Solyc06g017970.4 Solanum lycopersicum HOM05D003337 ORTHO05D003808 3.1e-08 60.5 36 69.4
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 3.1e-08 60.5 36 69.4
VMungo1383G2812 Vigna mungo HOM05D006769 ORTHO05D008522 7.0e-08 59.3 36 75.0
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.7e-07 57.4 36 75.0
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 3.8e-06 53.5 36 63.9
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 5.0e-06 53.1 36 69.4


User provided reference genes

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