Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00278 Nelumbo nucifera HOM05D000112 ORTHO05D005280 9.2e-40 166.4 82 100.0
Nn5g27939 Nelumbo nucifera HOM05D000112 ORTHO05D005280 1.0e-30 136.3 88 79.5
Nn1g08508 Nelumbo nucifera HOM05D000112 ORTHO05D005280 5.8e-26 120.6 87 66.7
Manes.18G072400 Manihot esculenta HOM05D000112 ORTHO05D005280 3.0e-14 81.6 84 52.4
Dinv26727 Davidia involucrata HOM05D000112 ORTHO05D005280 1.5e-13 79.3 92 54.3
Haze_00537 Corylus avellana HOM05D000112 ORTHO05D005280 2.5e-13 78.6 83 48.2
Cfa015951 Carpinus fangiana HOM05D000112 ORTHO05D005280 3.3e-13 78.2 83 47.0
MD15G1359400 Malus domestica HOM05D000112 ORTHO05D005280 9.6e-13 76.6 83 47.0
Eucgr.F04380 Eucalyptus grandis HOM05D000112 ORTHO05D005280 2.1e-12 75.5 85 47.1
TAR624G0499 Trochodendron aralioides HOM05D000112 ORTHO05D005280 2.1e-12 75.5 85 51.8
Cpa.g.sc49.122 Carica papaya HOM05D000112 ORTHO05D005280 2.8e-12 75.1 91 47.3
Sabra05G0128800 Salix brachista HOM05D000112 ORTHO05D005280 1.1e-11 73.2 83 50.6
CSS0020256 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D005280 1.8e-11 72.4 90 55.6
Rhsim11G0064700 Rhododendron simsii HOM05D000112 ORTHO05D005280 1.8e-11 72.4 83 56.6
PGR044G2358 Punica granatum HOM05D000112 ORTHO05D005280 2.4e-11 72.0 85 43.5
Dinv27391 Davidia involucrata HOM05D002692 ORTHO05D005280 5.3e-11 70.9 95 50.5
Potri.002G089900 Populus trichocarpa HOM05D000112 ORTHO05D005280 1.2e-10 69.7 83 51.8
Potri.005G171300 Populus trichocarpa HOM05D000112 ORTHO05D005280 1.2e-10 69.7 83 48.2
Hma1.2p1_0251F.1_g102580 Hydrangea macrophylla HOM05D000112 ORTHO05D005280 1.5e-10 69.3 88 55.7
Sabra02G0070800 Salix brachista HOM05D000112 ORTHO05D005280 1.5e-10 69.3 82 51.2
CiPaw.05G230000 Carya illinoinensis HOM05D000112 ORTHO05D005280 2.0e-10 68.9 88 46.6
MBI16_g07654_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005280 2.0e-10 68.9 85 48.2
Zm00001eb221620 Zea mays HOM05D000112 ORTHO05D001243 2.6e-10 68.6 91 44.0
Prupe.1G507000 Prunus persica HOM05D000112 ORTHO05D005280 3.4e-10 68.2 84 45.2
FvH4_5g38770 Fragaria vesca HOM05D000112 ORTHO05D005280 5.8e-10 67.4 84 46.4
MBI09_g12158_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005280 5.8e-10 67.4 82 48.8
Lj1g0018828 Lotus japonicus HOM05D000112 ORTHO05D005280 7.6e-10 67.0 90 41.1
Sed0017908 Sechium edule HOM05D000112 ORTHO05D005280 7.6e-10 67.0 91 40.7
QL12p035420 Quercus lobata HOM05D000112 ORTHO05D005280 1.0e-09 66.6 88 39.8
FAN04G1771 Fragaria x ananassa HOM05D000112 ORTHO05D005280 2.2e-09 65.5 84 45.2
FAN08G3471 Fragaria x ananassa HOM05D000112 ORTHO05D005280 2.2e-09 65.5 84 45.2
FAN18G2720 Fragaria x ananassa HOM05D000112 ORTHO05D005280 3.8e-09 64.7 84 45.2
RcHm_v2.0_Chr7g0240691 Rosa chinensis HOM05D000112 ORTHO05D005280 6.5e-09 63.9 83 42.2
TAR628G1075 Trochodendron aralioides HOM05D000112 ORTHO05D005280 6.5e-09 63.9 85 47.1
CsaV3_1G023020 Cucumis sativus L. HOM05D000112 ORTHO05D005280 8.4e-09 63.5 88 38.6
Hund16818 Selenicereus undatus HOM05D000112 ORTHO05D005280 8.4e-09 63.5 85 45.9
DCAR_014788 Daucus carota HOM05D000112 ORTHO05D005280 1.1e-08 63.2 81 45.7
Lj4A547G41 Lonicera japonica HOM05D000112 ORTHO05D005280 1.1e-08 63.2 90 43.3
Zm00001eb045640 Zea mays HOM05D000112 ORTHO05D001243 1.1e-08 63.2 91 41.8
CiPaw.06G024100 Carya illinoinensis HOM05D000112 ORTHO05D005280 1.4e-08 62.8 86 43.0
Nitab4.5_0000071g0020 Nicotiana tabacum HOM05D000112 ORTHO05D001243 1.4e-08 62.8 103 37.9
FAN13G1946 Fragaria x ananassa HOM05D000112 ORTHO05D005280 1.9e-08 62.4 84 44.0
Lj4A576G36 Lonicera japonica HOM05D000112 ORTHO05D005280 1.9e-08 62.4 90 43.3
Nitab4.5_0002524g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001243 1.9e-08 62.4 103 39.8
Eucgr.J00923 Eucalyptus grandis HOM05D000112 ORTHO05D001243 4.2e-08 61.2 102 36.3
Lj2A112G39 Lonicera japonica HOM05D000112 ORTHO05D001243 5.5e-08 60.8 103 36.9
MD00G1103900 Malus domestica HOM05D000112 ORTHO05D005280 5.5e-08 60.8 83 42.2
TAR623G1145 Trochodendron aralioides HOM05D000112 ORTHO05D001243 5.5e-08 60.8 103 38.8
arahy.Tifrunner.gnm1.ann1.FTQ5UB Arachis hypogaea HOM05D000112 ORTHO05D005280 7.1e-08 60.5 89 39.3
Sc01g0001590 Simmondsia chinensis HOM05D000112 ORTHO05D005280 9.3e-08 60.1 94 41.5
TAR369G0051 Trochodendron aralioides HOM05D000112 ORTHO05D001243 9.3e-08 60.1 99 38.4
TAR633G0867 Trochodendron aralioides HOM05D000112 ORTHO05D001243 9.3e-08 60.1 104 37.5
arahy.Tifrunner.gnm1.ann1.Z4KUZI Arachis hypogaea HOM05D000112 ORTHO05D005280 1.2e-07 59.7 84 40.5
ClCG08G010910 Citrullus lanatus HOM05D000112 ORTHO05D005280 1.2e-07 59.7 92 35.9
arahy.Tifrunner.gnm1.ann1.W230FE Arachis hypogaea HOM05D000112 ORTHO05D005280 1.6e-07 59.3 90 38.9
CAN.G631.34 Capsicum annuum HOM05D000112 ORTHO05D001243 1.6e-07 59.3 94 42.6
CARHR237990 Cardamine hirsuta HOM05D000112 ORTHO05D001243 2.1e-07 58.9 94 43.6
MBI07_g26018_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D001243 2.1e-07 58.9 104 37.5
Os10g0479900 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D001243 2.1e-07 58.9 95 38.9
PSO063G1317 Papaver somniferum HOM05D000112 ORTHO05D001243 2.1e-07 58.9 99 38.4
PSO339G5265 Papaver somniferum HOM05D000112 ORTHO05D001243 2.1e-07 58.9 99 38.4
Potri.010G223200 Populus trichocarpa HOM05D000112 ORTHO05D001243 2.1e-07 58.9 96 37.5
Sp7g27930 Schrenkiella parvula HOM05D000112 ORTHO05D001243 2.1e-07 58.9 94 40.4
vmacro00786 Vaccinium macrocarpon HOM05D000112 ORTHO05D005280 2.1e-07 58.9 82 52.4
CSS0028688 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D001243 2.7e-07 58.5 98 36.7
CiPaw.02G173700 Carya illinoinensis HOM05D000112 ORTHO05D001243 2.7e-07 58.5 97 39.2
Migut.J00534 Erythranthe guttata HOM05D000112 ORTHO05D001243 2.7e-07 58.5 97 39.2
THA.LOC104827209 Tarenaya hassleriana HOM05D000112 ORTHO05D001243 2.7e-07 58.5 94 41.5
HPP92_008618 Vanilla planifolia HOM05D000112 ORTHO05D001243 2.7e-07 58.5 97 37.1
arahy.Tifrunner.gnm1.ann1.YSV1GS Arachis hypogaea HOM05D000112 ORTHO05D005280 3.5e-07 58.2 94 38.3
arahy.Tifrunner.gnm1.ann1.ZW7I7X Arachis hypogaea HOM05D000112 ORTHO05D005280 3.5e-07 58.2 91 38.5
CSS0042815 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D001243 3.5e-07 58.2 104 37.5
Glyma.06G108051 Glycine max HOM05D000112 ORTHO05D005280 3.5e-07 58.2 77 44.2
Lj1C912T0 Lonicera japonica HOM05D000112 ORTHO05D001243 3.5e-07 58.2 96 38.5
Oeu059966.1 Olea europaea HOM05D000112 ORTHO05D001243 3.5e-07 58.2 101 36.6
TWI63G1446 Tripterygium wilfordii HOM05D000112 ORTHO05D001243 3.5e-07 58.2 97 38.1
HanXRQChr14g0456831 Helianthus annuus HOM05D000112 ORTHO05D001243 4.6e-07 57.8 86 43.0
AagrBONN_evm.TU.Sc2ySwM_369.338 Anthoceros agrestis HOM05D000112 ORTHO05D001243 6.1e-07 57.4 107 37.4
SalBow3G2124 Salvia bowleyana HOM05D000112 ORTHO05D001243 6.1e-07 57.4 97 40.2
SalBow8G0491 Salvia bowleyana HOM05D000112 ORTHO05D001243 6.1e-07 57.4 97 40.2
SGA_v2.0_scaffold180G39664 Striga asiatica HOM05D000112 ORTHO05D001243 6.1e-07 57.4 96 43.8
TWI15G0116 Tripterygium wilfordii HOM05D000112 ORTHO05D001243 6.1e-07 57.4 92 40.2
TAR636G1613 Trochodendron aralioides HOM05D000112 ORTHO05D001243 6.1e-07 57.4 102 35.3
A01p08060 Brassica napus HOM05D000112 ORTHO05D001243 7.9e-07 57.0 89 40.4
BraA01t00751Z Brassica rapa HOM05D000112 ORTHO05D001243 7.9e-07 57.0 89 40.4
CDE04G0270 Ceratophyllum demersum HOM05D000112 ORTHO05D001243 7.9e-07 57.0 104 37.5
AL7G22120 Arabidopsis lyrata HOM05D000112 ORTHO05D001243 1.0e-06 56.6 94 39.4
AT4G30080 Arabidopsis thaliana HOM05D000112 ORTHO05D001243 1.0e-06 56.6 94 39.4
arahy.Tifrunner.gnm1.ann1.ER65H4 Arachis hypogaea HOM05D000112 ORTHO05D005280 1.0e-06 56.6 87 39.1
BcaC09g51784 Brassica carinata HOM05D000112 ORTHO05D001243 1.0e-06 56.6 94 42.6
Carub.0007s1052 Capsella rubella HOM05D000112 ORTHO05D001243 1.0e-06 56.6 94 39.4
Ciclev10030860m.g Citrus clementina HOM05D000112 ORTHO05D001243 1.0e-06 56.6 98 38.8
Solyc11g069500.2 Solanum lycopersicum HOM05D000112 ORTHO05D001243 1.0e-06 56.6 95 37.9
Sopen11g028210 Solanum pennellii HOM05D000112 ORTHO05D001243 1.0e-06 56.6 95 37.9
Cpa.g.sc53.88 Carica papaya HOM05D000112 ORTHO05D001243 1.3e-06 56.2 98 40.8
CiPaw.01G272200 Carya illinoinensis HOM05D000112 ORTHO05D001243 1.3e-06 56.2 97 40.2
CiPaw.13G114200 Carya illinoinensis HOM05D000112 ORTHO05D001243 1.3e-06 56.2 103 36.9
Dinv36433 Davidia involucrata HOM05D000112 ORTHO05D001243 1.3e-06 56.2 103 35.9
Thhalv10024601m.g Eutrema salsugineum HOM05D000112 ORTHO05D001243 1.3e-06 56.2 94 38.3
Aqoxy1G01226 Aquilegia oxysepala HOM05D000112 ORTHO05D001243 1.8e-06 55.8 104 36.5
CANSAT80G1202 Cannabis sativa HOM05D000112 ORTHO05D001243 1.8e-06 55.8 104 35.6
Nn2g10814 Nelumbo nucifera HOM05D000112 ORTHO05D001243 1.8e-06 55.8 104 37.5
Nitab4.5_0000602g0120 Nicotiana tabacum HOM05D000112 ORTHO05D001243 1.8e-06 55.8 96 38.5
SMO367G0570 Selaginella moellendorffii HOM05D000112 ORTHO05D001243 1.8e-06 55.8 89 38.2
CAN.G363.34 Capsicum annuum HOM05D000112 ORTHO05D001243 2.3e-06 55.5 100 36.0
Peaxi162Scf01011g00014 Petunia axillaris HOM05D000112 ORTHO05D001243 2.3e-06 55.5 103 34.0
Sed0021582 Sechium edule HOM05D000112 ORTHO05D001243 2.3e-06 55.5 104 35.6
arahy.Tifrunner.gnm1.ann1.UH60M2 Arachis hypogaea HOM05D000112 ORTHO05D005280 3.0e-06 55.1 89 36.0
Haze_23814 Corylus avellana HOM05D000112 ORTHO05D001243 3.0e-06 55.1 103 37.9
Dinv32735 Davidia involucrata HOM05D000112 ORTHO05D001243 3.0e-06 55.1 104 35.6
Glyma.12G174100 Glycine max HOM05D000112 ORTHO05D001243 3.0e-06 55.1 101 35.6
Gohir.D10G213600 Gossypium hirsutum HOM05D000112 ORTHO05D001243 3.0e-06 55.1 95 37.9
Gorai.011G238900 Gossypium raimondii HOM05D000112 ORTHO05D001243 3.0e-06 55.1 95 37.9
Hma1.2p1_0307F.1_g119760 Hydrangea macrophylla HOM05D000112 ORTHO05D001243 3.0e-06 55.1 103 35.9
Lalb_Chr14g0374611 Lupinus albus HOM05D000112 ORTHO05D001243 3.0e-06 55.1 105 36.2
Medtr5g061220 Medicago truncatula HOM05D000112 ORTHO05D005280 3.0e-06 55.1 83 37.3
Nn2g13111 Nelumbo nucifera HOM05D000112 ORTHO05D001243 3.0e-06 55.1 104 38.5
HPP92_005142 Vanilla planifolia HOM05D000112 ORTHO05D001243 3.0e-06 55.1 97 37.1
HPP92_005155 Vanilla planifolia HOM05D000112 ORTHO05D001243 3.0e-06 55.1 97 37.1
BcaC09g51785 Brassica carinata HOM05D000112 ORTHO05D001243 3.9e-06 54.7 93 39.8
C01p09040 Brassica napus HOM05D000112 ORTHO05D001243 3.9e-06 54.7 93 39.8
BolC1t00894H Brassica oleracea HOM05D000112 ORTHO05D001243 3.9e-06 54.7 93 39.8
Cfa001649 Carpinus fangiana HOM05D000112 ORTHO05D001243 3.9e-06 54.7 97 38.1
COL.COLO4_18322 Corchorus olitorius HOM05D000112 ORTHO05D001243 3.9e-06 54.7 99 36.4
Haze_20586 Corylus avellana HOM05D000112 ORTHO05D001243 3.9e-06 54.7 106 35.8
Eucgr.K01240 Eucalyptus grandis HOM05D000112 ORTHO05D001243 3.9e-06 54.7 104 37.5
Lsat_1_v5_gn_2_112381 Lactuca sativa HOM05D000112 ORTHO05D001243 3.9e-06 54.7 86 39.5
Lalb_Chr11g0065641 Lupinus albus HOM05D000112 ORTHO05D005280 3.9e-06 54.7 96 38.5
Nitab4.5_0009330g0010 Nicotiana tabacum HOM05D000112 ORTHO05D001243 3.9e-06 54.7 96 38.5
Potri.006G127500 Populus trichocarpa HOM05D000112 ORTHO05D001243 3.9e-06 54.7 104 37.5
Potri.009G014800 Populus trichocarpa HOM05D000112 ORTHO05D001243 3.9e-06 54.7 96 37.5
RcHm_v2.0_Chr1g0363241 Rosa chinensis HOM05D000112 ORTHO05D001243 3.9e-06 54.7 97 38.1
Solyc09g007810.4 Solanum lycopersicum HOM05D000112 ORTHO05D001243 3.9e-06 54.7 101 34.7
Sopen09g002650 Solanum pennellii HOM05D000112 ORTHO05D001243 3.9e-06 54.7 101 34.7
VMungo0720G2619 Vigna mungo HOM05D000112 ORTHO05D001243 3.9e-06 54.7 91 38.5
Aa31LG2G20490 Aethionema arabicum HOM05D000112 ORTHO05D001243 5.1e-06 54.3 88 39.8
arahy.Tifrunner.gnm1.ann1.35XBQI Arachis hypogaea HOM05D000112 ORTHO05D005280 5.1e-06 54.3 87 42.5
BcaNung00517 Brassica carinata HOM05D000112 ORTHO05D001243 5.1e-06 54.3 94 38.3
ECA238G4193 Erigeron canadensis HOM05D000112 ORTHO05D001243 5.1e-06 54.3 86 37.2
FAN02G4551 Fragaria x ananassa HOM05D000112 ORTHO05D001243 5.1e-06 54.3 102 35.3
FAN05G1991 Fragaria x ananassa HOM05D000112 ORTHO05D001243 5.1e-06 54.3 102 35.3
Lj1C203T9 Lonicera japonica HOM05D000112 ORTHO05D001243 5.1e-06 54.3 101 37.6
Peaxi162Scf00123g00214 Petunia axillaris HOM05D000112 ORTHO05D001243 5.1e-06 54.3 101 35.6
PGR119G0981 Punica granatum HOM05D000112 ORTHO05D001243 5.1e-06 54.3 98 38.8
SalBow3G4462 Salvia bowleyana HOM05D000112 ORTHO05D001243 5.1e-06 54.3 93 41.9
PGSC0003DMG400021560 Solanum tuberosum HOM05D000112 ORTHO05D001243 5.1e-06 54.3 103 35.0
CiPaw.14G081500 Carya illinoinensis HOM05D000112 ORTHO05D001243 6.7e-06 53.9 102 35.3
Cc01_g11020 Coffea canephora HOM05D000112 ORTHO05D001243 6.7e-06 53.9 104 34.6
MD04G1096900 Malus domestica HOM05D000112 ORTHO05D001243 6.7e-06 53.9 104 35.6
Nitab4.5_0000051g0180 Nicotiana tabacum HOM05D000112 ORTHO05D005280 6.7e-06 53.9 82 42.7
Nitab4.5_0003923g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001243 6.7e-06 53.9 102 34.3
Oeu010023.1 Olea europaea HOM05D000112 ORTHO05D001243 6.7e-06 53.9 98 36.7
Os02g0628600 Oryza sativa ssp. japonica HOM05D000112 ORTHO05D001243 6.7e-06 53.9 92 37.0
Potri.008G039000 Populus trichocarpa HOM05D000112 ORTHO05D001243 6.7e-06 53.9 90 40.0
EL10Ac1g00046 Beta vulgaris HOM05D000112 ORTHO05D005280 8.7e-06 53.5 81 43.2
CDE07G1019 Ceratophyllum demersum HOM05D000112 ORTHO05D001243 8.7e-06 53.5 104 37.5
FAN09G3896 Fragaria x ananassa HOM05D000112 ORTHO05D001243 8.7e-06 53.5 104 34.6
FAN14G3601 Fragaria x ananassa HOM05D000112 ORTHO05D001243 8.7e-06 53.5 104 34.6
Gohir.A10G205300 Gossypium hirsutum HOM05D000112 ORTHO05D001243 8.7e-06 53.5 94 36.2
Gohir.D05G103600 Gossypium hirsutum HOM05D000112 ORTHO05D001243 8.7e-06 53.5 91 38.5
Lj2C1025G3 Lonicera japonica HOM05D000112 ORTHO05D001243 8.7e-06 53.5 105 36.2
Lalb_Chr23g0270791 Lupinus albus HOM05D000112 ORTHO05D005280 8.7e-06 53.5 99 36.4
Peaxi162Scf00270g00314 Petunia axillaris HOM05D000112 ORTHO05D001243 8.7e-06 53.5 96 38.5
Phvul.007G149000 Phaseolus vulgaris HOM05D000112 ORTHO05D001243 8.7e-06 53.5 104 34.6
Rhsim03G0119900 Rhododendron simsii HOM05D000112 ORTHO05D001243 8.7e-06 53.5 106 34.0
RcHm_v2.0_Chr3g0469661 Rosa chinensis HOM05D000112 ORTHO05D001243 8.7e-06 53.5 104 34.6
THA.LOC104813638 Tarenaya hassleriana HOM05D000112 ORTHO05D005280 8.7e-06 53.5 84 38.1
Thecc.10G075400 Theobroma cacao HOM05D000112 ORTHO05D001243 8.7e-06 53.5 98 38.8


User provided reference genes

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