Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00273 Nelumbo nucifera HOM05D003637 ORTHO05D004175 2.0e-65 252.3 130 100.0
Nn3g21609 Nelumbo nucifera HOM05D003637 ORTHO05D004175 5.6e-23 111.3 65 87.7
TAR628G0957 Trochodendron aralioides HOM05D003637 ORTHO05D004175 2.4e-18 95.9 65 72.3
Lj9C543T19 Lonicera japonica HOM05D003637 ORTHO05D004175 4.6e-17 91.7 65 67.7
CSS0048399 Camellia sinensis var. sinensis HOM05D003637 ORTHO05D004175 6.0e-17 91.3 65 69.2
MBI06_g32172_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 6.0e-17 91.3 65 67.7
Lalb_Chr16g0387641 Lupinus albus HOM05D003637 ORTHO05D004175 7.8e-17 90.9 65 69.2
vmacro18731 Vaccinium macrocarpon HOM05D003637 ORTHO05D004175 7.8e-17 90.9 67 64.2
GSVIVG01036287001 Vitis vinifera HOM05D003637 ORTHO05D004175 1.7e-16 89.7 65 70.8
RcHm_v2.0_Chr6g0251201 Rosa chinensis HOM05D003637 ORTHO05D004175 2.3e-16 89.4 65 67.7
Haze_13959 Corylus avellana HOM05D003637 ORTHO05D004175 3.0e-16 89.0 65 69.2
MBI03_g13500_MAGBIO Magnolia biondii HOM05D003637 ORTHO05D004175 3.0e-16 89.0 62 69.4
Aqoxy1G03903 Aquilegia oxysepala HOM05D003637 ORTHO05D004175 3.9e-16 88.6 65 66.2
Migut.E00203 Erythranthe guttata HOM05D003637 ORTHO05D004175 5.1e-16 88.2 65 69.2
Rhsim08G0251700 Rhododendron simsii HOM05D003637 ORTHO05D004175 6.6e-16 87.8 65 66.2
CANSAT35G0345 Cannabis sativa HOM05D003637 ORTHO05D004175 8.7e-16 87.4 65 67.7
Cfa008076 Carpinus fangiana HOM05D003637 ORTHO05D004175 8.7e-16 87.4 65 66.2
arahy.Tifrunner.gnm1.ann1.TE3K01 Arachis hypogaea HOM05D003637 ORTHO05D004175 2.5e-15 85.9 65 63.1
Psat6g083160 Pisum sativum HOM05D003637 ORTHO05D004175 2.5e-15 85.9 62 71.0
CANSAT64G0718 Cannabis sativa HOM05D003637 ORTHO05D004175 3.3e-15 85.5 65 66.2
Prupe.8G006900 Prunus persica HOM05D003637 ORTHO05D004175 3.3e-15 85.5 65 64.6
Oeu004354.1 Olea europaea HOM05D003637 ORTHO05D004175 4.3e-15 85.1 65 66.2
Ah.05g170380 Amaranthus hybridus HOM05D003637 ORTHO05D004175 5.6e-15 84.7 65 64.6
Medtr1g057860 Medicago truncatula HOM05D003637 ORTHO05D004175 5.6e-15 84.7 62 69.4
Medtr5g091860 Medicago truncatula HOM05D003637 ORTHO05D004175 5.6e-15 84.7 71 62.0
SalBow8G3371 Salvia bowleyana HOM05D003637 ORTHO05D004175 5.6e-15 84.7 65 66.2
arahy.Tifrunner.gnm1.ann1.5D638A Arachis hypogaea HOM05D003637 ORTHO05D004175 7.3e-15 84.3 65 63.1
EL10Ac1g01273 Beta vulgaris HOM05D003637 ORTHO05D004175 7.3e-15 84.3 65 66.2
Ca_14602_v3 Cicer arietinum L. HOM05D003637 ORTHO05D004175 7.3e-15 84.3 62 69.4
DCAR_014239 Daucus carota HOM05D003637 ORTHO05D004175 7.3e-15 84.3 65 67.7
CiPaw.03G014200 Carya illinoinensis HOM05D003637 ORTHO05D004175 9.6e-15 84.0 65 66.2
arahy.Tifrunner.gnm1.ann1.ICJU69 Arachis hypogaea HOM05D003637 ORTHO05D004175 1.3e-14 83.6 65 63.1
QL09p050166 Quercus lobata HOM05D003637 ORTHO05D004175 1.3e-14 83.6 65 64.6
Hund26943 Selenicereus undatus HOM05D003637 ORTHO05D004175 1.3e-14 83.6 65 64.6
arahy.Tifrunner.gnm1.ann1.JT5ZHZ Arachis hypogaea HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 63.1
Cpa.g.sc1431.2 Carica papaya HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 61.5
FvH4_2g00780 Fragaria vesca HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 63.1
FAN24G0737 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 63.1
FAN27G1433 Fragaria x ananassa HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 63.1
Oeu015342.1 Olea europaea HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 64.6
TPR.G29194 Trifolium pratense HOM05D003637 ORTHO05D004175 1.6e-14 83.2 62 69.4
HPP92_000901 Vanilla planifolia HOM05D003637 ORTHO05D004175 1.6e-14 83.2 65 66.2
PGR042G1411 Punica granatum HOM05D003637 ORTHO05D004175 2.1e-14 82.8 65 66.2
Zm00001eb354240 Zea mays HOM05D003637 ORTHO05D004175 2.1e-14 82.8 65 60.0
Cfa004677 Carpinus fangiana HOM05D003637 ORTHO05D004175 2.8e-14 82.4 65 61.5
MD05G1003500 Malus domestica HOM05D003637 ORTHO05D004175 2.8e-14 82.4 65 61.5
Ciclev10018820m.g Citrus clementina HOM05D003637 ORTHO05D004175 3.6e-14 82.0 65 63.1
FAN20G2805 Fragaria x ananassa HOM05D003637 ORTHO05D004175 3.6e-14 82.0 65 63.1
MD10G1004600 Malus domestica HOM05D003637 ORTHO05D004175 3.6e-14 82.0 65 64.6
QL07p006103 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-14 82.0 65 63.1
QL08p063032 Quercus lobata HOM05D002302 ORTHO05D002728 3.6e-14 82.0 65 63.1
QL93p0073_0666 Quercus lobata HOM05D003637 ORTHO05D004175 3.6e-14 82.0 65 63.1
Zm00001eb267790 Zea mays HOM05D003637 ORTHO05D004175 3.6e-14 82.0 65 60.0
Glyma.08G042400 Glycine max HOM05D003637 ORTHO05D004175 4.8e-14 81.6 65 61.5
TPR.G8734 Trifolium pratense HOM05D003637 ORTHO05D004175 4.8e-14 81.6 62 67.7
MSTRG.13350 Avicennia marina HOM05D003637 ORTHO05D004175 6.2e-14 81.3 65 63.1
Os05g0150900 Oryza sativa ssp. japonica HOM05D003637 ORTHO05D004175 8.1e-14 80.9 65 58.5
QL05p083460 Quercus lobata HOM05D002302 ORTHO05D004175 8.1e-14 80.9 65 61.5
QL09p001806 Quercus lobata HOM05D003637 ORTHO05D004175 8.1e-14 80.9 65 63.1
QL11p001805 Quercus lobata HOM05D003637 ORTHO05D004175 8.1e-14 80.9 65 63.1
Eucgr.E00009 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.1e-13 80.5 65 63.1
CDE10G0032 Ceratophyllum demersum HOM05D003637 ORTHO05D004175 1.4e-13 80.1 79 53.2
Eucgr.F02946 Eucalyptus grandis HOM05D003637 ORTHO05D004175 1.4e-13 80.1 65 63.1
Glyma.05G234900 Glycine max HOM05D003637 ORTHO05D004175 1.4e-13 80.1 65 61.5
PSO063G3025 Papaver somniferum HOM05D003637 ORTHO05D004175 1.4e-13 80.1 65 66.2
PSO782G5164 Papaver somniferum HOM05D003637 ORTHO05D004175 1.4e-13 80.1 65 66.2
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 1.8e-13 79.7 64 65.6
Lj4g0018134 Lotus japonicus HOM05D003637 ORTHO05D004175 2.4e-13 79.3 65 61.5
Manes.02G201900 Manihot esculenta HOM05D003637 ORTHO05D004175 2.4e-13 79.3 65 61.5
Potri.019G071400 Populus trichocarpa HOM05D003637 ORTHO05D004175 2.4e-13 79.3 65 61.5
PGR083G1739 Punica granatum HOM05D003637 ORTHO05D004175 2.4e-13 79.3 65 63.1
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 2.4e-13 79.3 65 61.5
Eucgr.E00010 Eucalyptus grandis HOM05D003637 ORTHO05D004175 3.1e-13 79.0 65 61.5
Sed0019638 Sechium edule HOM05D003637 ORTHO05D004175 3.1e-13 79.0 65 66.2
THA.LOC104820917 Tarenaya hassleriana HOM05D003637 ORTHO05D004175 4.0e-13 78.6 63 61.9
ATR1136G178 Amborella trichopoda HOM05D003637 ORTHO05D004175 6.9e-13 77.8 65 58.5
AUR62013381 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.2e-12 77.0 65 60.0
AUR62038534 Chenopodium quinoa HOM05D003637 ORTHO05D004175 1.2e-12 77.0 65 60.0
CsaV3_2G033230 Cucumis sativus L. HOM05D003637 ORTHO05D004175 1.2e-12 77.0 65 61.5
Phvul.002G320100 Phaseolus vulgaris HOM05D003637 ORTHO05D004175 1.2e-12 77.0 65 60.0
VMungo0251G0405 Vigna mungo HOM05D003637 ORTHO05D004175 1.2e-12 77.0 65 60.0
MELO3C008093.2 Cucumis melo HOM05D003637 ORTHO05D004175 1.5e-12 76.6 65 61.5
ClCG11G008420 Citrullus lanatus HOM05D003637 ORTHO05D004175 2.0e-12 76.3 65 63.1
Peaxi162Scf00194g01048 Petunia axillaris HOM05D003637 ORTHO05D004175 2.0e-12 76.3 65 60.0
ECA238G2554 Erigeron canadensis HOM05D003637 ORTHO05D004175 4.4e-12 75.1 65 56.9
Sc25g0003100 Simmondsia chinensis HOM05D003637 ORTHO05D004175 4.4e-12 75.1 65 58.5
AL3G12170 Arabidopsis lyrata HOM05D003637 ORTHO05D004175 7.6e-12 74.3 62 59.7
BcaB04g21398 Brassica carinata HOM05D003637 ORTHO05D004175 7.6e-12 74.3 62 58.1
Carub.0003s0186 Capsella rubella HOM05D003637 ORTHO05D004175 9.9e-12 73.9 62 59.7
Cc04_g00120 Coffea canephora HOM05D003637 ORTHO05D004175 9.9e-12 73.9 62 64.5
SEGI_09615 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 9.9e-12 73.9 79 51.9
Aa31LG11G13210 Aethionema arabicum HOM05D003637 ORTHO05D004175 1.3e-11 73.6 63 60.3
CAN.G1379.10 Capsicum annuum HOM05D003637 ORTHO05D004175 1.3e-11 73.6 65 61.5
CARHR076770 Cardamine hirsuta HOM05D003637 ORTHO05D004175 1.3e-11 73.6 65 56.9
Solyc01g102800.3 Solanum lycopersicum HOM05D003637 ORTHO05D004175 1.3e-11 73.6 65 61.5
Sopen01g045200 Solanum pennellii HOM05D003637 ORTHO05D004175 1.3e-11 73.6 65 61.5
Atru.chr13.2499 Acer truncatum HOM05D003637 ORTHO05D004175 1.7e-11 73.2 65 56.9
Atru.chr13.2508 Acer truncatum HOM05D003637 ORTHO05D004175 1.7e-11 73.2 65 56.9
PGSC0003DMG400018260 Solanum tuberosum HOM05D003637 ORTHO05D004175 1.7e-11 73.2 65 61.5
Aa31LG5G13230 Aethionema arabicum HOM05D003637 ORTHO05D004175 2.2e-11 72.8 63 55.6
AT3G02760 Arabidopsis thaliana HOM05D003637 ORTHO05D004175 2.2e-11 72.8 62 58.1
A03p33090 Brassica napus HOM05D003637 ORTHO05D004175 2.2e-11 72.8 62 58.1
Sp3g01790 Schrenkiella parvula HOM05D003637 ORTHO05D004175 2.2e-11 72.8 62 58.1
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 2.2e-11 72.8 65 56.9
BNapus_Darmor_BZH_scaffold_122p00030 Brassica napus HOM05D003637 ORTHO05D004175 3.8e-11 72.0 62 54.8
BolC1t05898H Brassica oleracea HOM05D003637 ORTHO05D004175 3.8e-11 72.0 62 54.8
BraA03t12479Z Brassica rapa HOM05D003637 ORTHO05D004175 3.8e-11 72.0 62 58.1
TWI38G2004 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 3.8e-11 72.0 65 52.3
Thhalv10020033m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 4.9e-11 71.6 62 58.1
PSO513G0157 Papaver somniferum HOM05D003637 ORTHO05D004175 4.9e-11 71.6 62 59.7
BcaB04g19390 Brassica carinata HOM05D003637 ORTHO05D004175 6.4e-11 71.2 62 54.8
Nitab4.5_0000110g0370 Nicotiana tabacum HOM05D003637 ORTHO05D004175 6.4e-11 71.2 65 58.5
Nitab4.5_0003246g0090 Nicotiana tabacum HOM05D003637 ORTHO05D004175 6.4e-11 71.2 65 58.5
BcaNung05408 Brassica carinata HOM05D003637 ORTHO05D004175 8.4e-11 70.9 62 54.8
C03p40270 Brassica napus HOM05D003637 ORTHO05D004175 8.4e-11 70.9 62 56.5
BolC3t16292H Brassica oleracea HOM05D003637 ORTHO05D004175 8.4e-11 70.9 62 56.5
TWI39G1182 Tripterygium wilfordii HOM05D003637 ORTHO05D004175 8.4e-11 70.9 65 52.3
SEGI_30050 Sequoiadendron giganteum HOM05D003637 ORTHO05D004175 1.1e-10 70.5 62 58.1
BNapus_Darmor_BZH_scaffold_99p00050 Brassica napus HOM05D003637 ORTHO05D004175 3.2e-10 68.9 62 53.2
Mapoly0125s0016 Marchantia polymorpha HOM05D003637 ORTHO05D004175 5.4e-10 68.2 65 53.8
COL.COLO4_20337 Corchorus olitorius HOM05D003637 ORTHO05D004175 1.2e-09 67.0 67 53.7
HanXRQChr01g0009571 Helianthus annuus HOM05D003637 ORTHO05D004175 1.2e-09 67.0 65 52.3
HanXRQChr07g0194841 Helianthus annuus HOM05D003637 ORTHO05D004175 2.7e-09 65.9 65 50.8
Duzib177G0609 Durio zibethinus HOM05D003637 ORTHO05D004175 3.5e-09 65.5 67 52.2
Nitab4.5_0001497g0160 Nicotiana tabacum HOM05D003637 ORTHO05D004175 6.0e-09 64.7 65 53.8
Thecc.05G195900 Theobroma cacao HOM05D003637 ORTHO05D004175 1.0e-08 63.9 67 49.3
PSO210G5637 Papaver somniferum HOM05D003637 ORTHO05D004175 1.7e-08 63.2 65 53.8
Duzib106G1310 Durio zibethinus HOM05D003637 ORTHO05D004175 2.3e-08 62.8 95 42.1
Gohir.A08G225700 Gossypium hirsutum HOM05D003637 ORTHO05D004175 2.3e-08 62.8 67 52.2
Gohir.D08G246100 Gossypium hirsutum HOM05D003637 ORTHO05D004175 2.3e-08 62.8 67 52.2
QL11p014752 Quercus lobata HOM05D001849 ORTHO05D004689 2.3e-08 62.8 48 62.5
Lsat_1_v5_gn_8_62500 Lactuca sativa HOM05D003637 ORTHO05D004175 6.6e-08 61.2 65 49.2
Gorai.004G262600 Gossypium raimondii HOM05D003637 ORTHO05D004175 1.5e-07 60.1 67 50.7
Lsat_1_v5_gn_2_108061 Lactuca sativa HOM05D003637 ORTHO05D004175 5.6e-07 58.2 61 49.2
Thhalv10001912m.g Eutrema salsugineum HOM05D003637 ORTHO05D004175 7.3e-07 57.8 53 52.8
AagrBONN_evm.TU.Sc2ySwM_344.5308 Anthoceros agrestis HOM05D003637 ORTHO05D004175 1.6e-06 56.6 59 50.8
Medtr1g022010 Medicago truncatula HOM05D003637 ORTHO05D004175 8.1e-06 54.3 47 57.4


User provided reference genes

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