Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.7e-91 339.3 170 100.0
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 4.5e-73 278.1 165 81.2
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.2e-71 271.9 166 77.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.2e-71 271.9 162 79.0
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.2e-71 271.9 167 78.4
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.2e-71 271.9 158 81.6
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 4.2e-71 271.6 161 80.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 5.5e-71 271.2 162 79.0
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 7.2e-71 270.8 158 81.0
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.6e-70 269.6 162 77.8
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-70 269.6 162 77.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.6e-70 269.6 165 79.4
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.1e-70 269.2 158 81.0
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.7e-70 268.1 161 80.1
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 8.0e-70 267.3 162 79.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.8e-69 266.2 158 80.4
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.3e-69 265.8 166 77.1
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 3.0e-69 265.4 158 81.0
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.7e-67 259.6 169 77.5
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 2.2e-67 259.2 166 74.1
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-67 259.2 172 72.7
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 3.7e-67 258.5 161 78.9
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.7e-67 258.5 158 79.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.7e-67 258.5 156 76.9
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 4.8e-67 258.1 166 78.3
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.3e-67 257.3 161 76.4
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.1e-66 256.9 161 75.8
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-66 256.9 162 74.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-66 256.1 164 74.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-66 256.1 164 74.4
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.4e-66 255.8 156 78.8
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 2.4e-66 255.8 159 76.7
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.4e-66 255.8 162 74.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 7.0e-66 254.2 161 76.4
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 9.1e-66 253.8 158 75.3
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.2e-65 253.4 155 78.7
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.6e-65 253.1 155 79.4
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.6e-65 253.1 159 76.1
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.0e-65 252.7 160 76.9
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.7e-65 252.3 164 72.6
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 2.7e-65 252.3 164 74.4
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.5e-65 251.9 164 72.6
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 3.5e-65 251.9 161 74.5
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 7.7e-65 250.8 155 79.4
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.7e-65 250.8 164 73.2
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.0e-64 250.4 164 75.0
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.0e-64 250.4 159 77.4
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.3e-64 250.0 166 74.7
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 1.7e-64 249.6 160 75.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.2e-64 249.2 142 85.9
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.2e-64 249.2 159 77.4
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 2.2e-64 249.2 171 73.7
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 2.9e-64 248.8 164 72.6
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 2.9e-64 248.8 161 75.8
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.9e-64 248.8 177 71.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 5.0e-64 248.1 158 78.5
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 5.0e-64 248.1 158 78.5
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 5.0e-64 248.1 164 73.8
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.1e-63 246.9 160 75.0
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 1.1e-63 246.9 164 72.6
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.1e-63 246.9 159 77.4
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.9e-63 246.1 160 75.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.9e-63 246.1 164 72.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 9.5e-63 243.8 163 74.2
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 9.5e-63 243.8 163 71.8
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.2e-62 243.4 160 74.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 1.2e-62 243.4 166 71.7
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.2e-62 243.4 159 72.3
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 2.1e-62 242.7 156 75.0
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.1e-62 242.7 164 70.7
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 2.7e-62 242.3 165 72.7
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 3.6e-62 241.9 142 81.0
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 6.1e-62 241.1 156 73.7
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 8.0e-62 240.7 156 73.7
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.0e-61 240.4 153 75.2
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.0e-61 240.4 156 73.1
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.0e-61 240.4 158 74.1
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.8e-61 239.6 167 71.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.8e-61 239.6 155 73.5
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.8e-61 239.6 157 74.5
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 3.0e-61 238.8 156 72.4
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.0e-61 238.8 156 73.1
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 4.0e-61 238.4 161 68.9
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.0e-61 238.4 164 71.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 5.2e-61 238.0 160 75.0
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 5.2e-61 238.0 161 71.4
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 5.2e-61 238.0 172 70.3
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.2e-61 238.0 154 74.0
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-60 236.9 154 73.4
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.2e-60 236.9 154 73.4
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.2e-60 236.9 154 73.4
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.2e-60 236.9 156 74.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.2e-60 236.9 156 74.4
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.2e-60 236.9 170 71.8
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.5e-60 236.5 160 73.8
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.5e-60 236.5 160 73.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.5e-60 236.5 169 69.8
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.0e-60 236.1 160 70.6
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.0e-60 236.1 164 71.3
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 2.6e-60 235.7 155 74.2
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.6e-60 235.7 156 71.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 3.4e-60 235.3 154 72.7
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 3.4e-60 235.3 154 72.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.4e-60 235.3 158 74.1
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 3.4e-60 235.3 156 71.8
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.7e-60 234.6 156 71.8
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 9.8e-60 233.8 167 67.1
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.2e-59 232.6 169 68.0
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 2.8e-59 232.3 156 69.2
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 4.9e-59 231.5 155 70.3
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.4e-58 229.9 155 70.3
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.8e-58 229.6 144 77.8
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 3.1e-58 228.8 167 68.9
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.1e-58 228.8 156 69.9
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 4.1e-58 228.4 158 69.6
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 9.2e-58 227.3 159 67.3
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.2e-57 226.9 158 69.0
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 1.6e-57 226.5 194 62.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 4.5e-57 224.9 160 65.0
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 5.9e-57 224.6 167 65.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 5.9e-57 224.6 166 70.5
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 7.7e-57 224.2 169 63.9
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.3e-56 223.4 159 65.4
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.3e-56 223.4 167 67.7
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.3e-56 223.4 167 67.7
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.3e-56 223.4 166 68.1
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 5.0e-56 221.5 155 69.0
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.1e-55 220.3 162 67.9
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 4.3e-55 218.4 142 75.4
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 4.3e-55 218.4 167 62.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.2e-54 216.9 134 74.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 2.1e-54 216.1 144 72.9
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.6e-54 215.3 138 77.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.6e-54 215.3 160 66.2
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 8.0e-54 214.2 152 67.8
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-53 213.8 122 83.6
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.8e-53 213.0 160 66.9
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.0e-53 212.2 141 74.5
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 5.2e-53 211.5 154 66.9
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 4.9e-51 204.9 142 69.7
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.8e-50 203.0 142 69.0
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 3.2e-50 202.2 124 74.2
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.1e-50 201.8 242 47.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 3.0e-48 195.7 142 68.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.3e-47 191.8 147 65.3
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 9.5e-47 190.7 155 62.6
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.9e-42 176.4 181 53.6
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.9e-42 176.4 181 53.6
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.3e-40 169.5 150 56.7
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 6.4e-35 151.4 89 82.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.5e-33 145.6 149 49.0
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 7.6e-28 127.9 115 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.2e-22 110.5 88 59.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 2.6e-20 102.8 89 57.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.7e-19 100.1 60 75.0
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 3.2e-18 95.9 68 67.6
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 7.8e-17 91.3 164 33.5
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 8.4e-11 71.2 48 60.4


User provided reference genes

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