Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00212 Nelumbo nucifera HOM05D004396 ORTHO05D005272 6.9e-57 223.8 116 100.0
Nn3g19387 Nelumbo nucifera HOM05D004396 ORTHO05D005272 2.2e-34 149.1 85 94.1
Haze_08163 Corylus avellana HOM05D004396 ORTHO05D005272 1.5e-32 142.9 90 85.6
QL12p001650 Quercus lobata HOM05D004396 ORTHO05D005272 2.0e-32 142.5 85 85.9
ClCG10G001270 Citrullus lanatus HOM05D004396 ORTHO05D005272 4.5e-32 141.4 85 87.1
Potri.003G096800 Populus trichocarpa HOM05D004396 ORTHO05D005272 7.7e-32 140.6 85 85.9
CiPaw.11G098400 Carya illinoinensis HOM05D004396 ORTHO05D005272 1.0e-31 140.2 85 84.7
Ciclev10002883m.g Citrus clementina HOM05D004396 ORTHO05D005272 1.0e-31 140.2 82 91.5
Manes.12G090054 Manihot esculenta HOM05D004396 ORTHO05D005272 1.0e-31 140.2 85 85.9
TAR375G0183 Trochodendron aralioides HOM05D004396 ORTHO05D005272 1.0e-31 140.2 86 86.0
THA.LOC104798491 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 1.3e-31 139.8 85 87.1
AUR62036328 Chenopodium quinoa HOM05D004396 ORTHO05D005272 1.7e-31 139.4 85 87.1
Manes.04G055632 Manihot esculenta HOM05D004396 ORTHO05D005272 1.7e-31 139.4 85 85.9
Rhsim11G0021700 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.7e-31 139.4 82 89.0
CSS0013599 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.2e-31 139.0 82 86.6
CSS0033679 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.2e-31 139.0 82 89.0
CSS0046263 Camellia sinensis var. sinensis HOM05D004396 ORTHO05D005272 2.2e-31 139.0 82 86.6
Thhalv10017441m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 2.2e-31 139.0 85 84.7
vmacro00278 Vaccinium macrocarpon HOM05D004396 ORTHO05D005272 2.2e-31 139.0 82 87.8
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 2.9e-31 138.7 82 87.8
THA.LOC104814414 Tarenaya hassleriana HOM05D004396 ORTHO05D005272 2.9e-31 138.7 85 85.9
AT1G32210 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 3.8e-31 138.3 85 83.5
Cpa.g.sc42.149 Carica papaya HOM05D004396 ORTHO05D005272 3.8e-31 138.3 85 85.9
CsaV3_3G001340 Cucumis sativus L. HOM05D004396 ORTHO05D005272 3.8e-31 138.3 85 85.9
Dinv29003 Davidia involucrata HOM05D004396 ORTHO05D005272 5.0e-31 137.9 82 87.8
Sp1g27890 Schrenkiella parvula HOM05D004396 ORTHO05D005272 8.5e-31 137.1 85 83.5
TWI81G0111 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 8.5e-31 137.1 85 84.7
AL1G46340 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 1.1e-30 136.7 85 82.4
Carub.0001s3054 Capsella rubella HOM05D004396 ORTHO05D005272 1.1e-30 136.7 85 83.5
CARHR031580 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.1e-30 136.7 85 82.4
Thhalv10009144m.g Eutrema salsugineum HOM05D004396 ORTHO05D005272 1.1e-30 136.7 85 82.4
GSVIVG01013064001 Vitis vinifera HOM05D004396 ORTHO05D005272 1.1e-30 136.7 85 84.7
Actinidia14779 Actinidia chinensis HOM05D004396 ORTHO05D005272 1.5e-30 136.3 82 87.8
COL.COLO4_16940 Corchorus olitorius HOM05D004396 ORTHO05D005272 1.5e-30 136.3 82 87.8
Eucgr.H00688 Eucalyptus grandis HOM05D004396 ORTHO05D005272 1.5e-30 136.3 85 83.5
Peaxi162Scf00170g00812 Petunia axillaris HOM05D004396 ORTHO05D005272 1.5e-30 136.3 88 81.8
Phvul.002G136700 Phaseolus vulgaris HOM05D004396 ORTHO05D005272 1.5e-30 136.3 85 84.7
CARHR129690 Cardamine hirsuta HOM05D004396 ORTHO05D005272 1.9e-30 136.0 85 83.5
Dinv25260 Davidia involucrata HOM05D004396 ORTHO05D005272 1.9e-30 136.0 82 86.6
Lsat_1_v5_gn_6_80060 Lactuca sativa HOM05D004396 ORTHO05D005272 1.9e-30 136.0 82 85.4
Sabra03G0065300 Salix brachista HOM05D004396 ORTHO05D005272 1.9e-30 136.0 85 82.4
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea HOM05D004396 ORTHO05D005272 2.5e-30 135.6 85 83.5
BolC5t31884H Brassica oleracea HOM05D004396 ORTHO05D005272 2.5e-30 135.6 91 76.9
Ciclev10013120m.g Citrus clementina HOM05D004396 ORTHO05D005272 2.5e-30 135.6 82 87.8
PSO339G1317 Papaver somniferum HOM05D004396 ORTHO05D005272 2.5e-30 135.6 84 86.9
PSO541G6011 Papaver somniferum HOM05D004396 ORTHO05D005272 2.5e-30 135.6 84 86.9
TWI60G0023 Tripterygium wilfordii HOM05D004396 ORTHO05D005272 2.5e-30 135.6 85 83.5
Actinidia18135 Actinidia chinensis HOM05D004396 ORTHO05D005272 3.2e-30 135.2 82 86.6
ATR0626G058 Amborella trichopoda HOM05D004396 ORTHO05D005272 3.2e-30 135.2 82 85.4
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea HOM05D004396 ORTHO05D005272 3.2e-30 135.2 85 83.5
BcaB07g32895 Brassica carinata HOM05D004396 ORTHO05D005272 3.2e-30 135.2 85 82.4
BraA09t38945Z Brassica rapa HOM05D004396 ORTHO05D005272 3.2e-30 135.2 85 82.4
PSO384G3027 Papaver somniferum HOM05D004396 ORTHO05D005272 3.2e-30 135.2 82 87.8
PGR031G0362 Punica granatum HOM05D004396 ORTHO05D005272 3.2e-30 135.2 85 82.4
PGR031G2119 Punica granatum HOM05D004396 ORTHO05D005272 3.2e-30 135.2 85 82.4
Sc01g0005580 Simmondsia chinensis HOM05D004396 ORTHO05D005272 3.2e-30 135.2 85 84.7
BcaB03g13752 Brassica carinata HOM05D004396 ORTHO05D005272 4.2e-30 134.8 85 81.2
BcaB04g17995 Brassica carinata HOM05D004396 ORTHO05D005272 4.2e-30 134.8 85 81.2
Sed0012676 Sechium edule HOM05D004396 ORTHO05D005272 4.2e-30 134.8 82 84.1
Thecc.03G310300 Theobroma cacao HOM05D004396 ORTHO05D005272 4.2e-30 134.8 86 86.0
BcaC05g27252 Brassica carinata HOM05D004396 ORTHO05D005272 5.5e-30 134.4 85 81.2
C05p31610 Brassica napus HOM05D004396 ORTHO05D005272 5.5e-30 134.4 85 81.2
BolC3t13671H Brassica oleracea HOM05D004396 ORTHO05D005272 5.5e-30 134.4 85 81.2
Cc08_g03470 Coffea canephora HOM05D004396 ORTHO05D005272 5.5e-30 134.4 86 84.9
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla HOM05D004396 ORTHO05D005272 5.5e-30 134.4 82 84.1
Nitab4.5_0000529g0110 Nicotiana tabacum HOM05D004396 ORTHO05D005272 5.5e-30 134.4 82 85.4
CiPaw.12G068300 Carya illinoinensis HOM05D004396 ORTHO05D005272 7.2e-30 134.0 85 82.4
PSO675G8737 Papaver somniferum HOM05D004396 ORTHO05D005272 7.2e-30 134.0 84 85.7
Hund10776 Selenicereus undatus HOM05D004396 ORTHO05D005272 7.2e-30 134.0 85 83.5
Solyc08g076460.3 Solanum lycopersicum HOM05D004396 ORTHO05D005272 7.2e-30 134.0 82 86.6
Sopen08g025040 Solanum pennellii HOM05D004396 ORTHO05D005272 7.2e-30 134.0 82 86.6
PGSC0003DMG400014795 Solanum tuberosum HOM05D004396 ORTHO05D005272 7.2e-30 134.0 82 86.6
AT2G35520 Arabidopsis thaliana HOM05D004396 ORTHO05D005272 9.4e-30 133.7 85 81.2
A05p25120 Brassica napus HOM05D004396 ORTHO05D005272 9.4e-30 133.7 85 80.0
BraA05t21392Z Brassica rapa HOM05D004396 ORTHO05D005272 9.4e-30 133.7 85 80.0
CAN.G726.24 Capsicum annuum HOM05D004396 ORTHO05D005272 9.4e-30 133.7 82 85.4
DCAR_008222 Daucus carota HOM05D004396 ORTHO05D005272 9.4e-30 133.7 82 85.4
Duzib205G0471 Durio zibethinus HOM05D004396 ORTHO05D005272 9.4e-30 133.7 83 84.3
HanXRQChr13g0414241 Helianthus annuus HOM05D004396 ORTHO05D005272 9.4e-30 133.7 89 80.9
VMungo1215G3227 Vigna mungo HOM05D004396 ORTHO05D005272 9.4e-30 133.7 85 83.5
Carub.0004s1721 Capsella rubella HOM05D004396 ORTHO05D005272 1.2e-29 133.3 85 78.8
ECA240G0094 Erigeron canadensis HOM05D004396 ORTHO05D005272 1.2e-29 133.3 82 85.4
Rhsim07G0132100 Rhododendron simsii HOM05D004396 ORTHO05D005272 1.2e-29 133.3 82 86.6
Sabra01G0105900 Salix brachista HOM05D004396 ORTHO05D005272 1.2e-29 133.3 85 81.2
Lalb_Chr05g0215751 Lupinus albus HOM05D004396 ORTHO05D005272 2.1e-29 132.5 85 81.2
Oeu027093.1 Olea europaea HOM05D004396 ORTHO05D005272 2.1e-29 132.5 82 84.1
AL4G31570 Arabidopsis lyrata HOM05D004396 ORTHO05D005272 2.7e-29 132.1 86 82.6
Aqoxy7G03666 Aquilegia oxysepala HOM05D004396 ORTHO05D005272 4.7e-29 131.3 82 82.9
Gorai.003G185400 Gossypium raimondii HOM05D004396 ORTHO05D005272 4.7e-29 131.3 82 85.4
Potri.001G136800 Populus trichocarpa HOM05D004396 ORTHO05D005272 4.7e-29 131.3 85 81.2
MSTRG.12178 Avicennia marina HOM05D004396 ORTHO05D005272 6.1e-29 131.0 82 82.9
Duzib084G0048 Durio zibethinus HOM05D004396 ORTHO05D005272 6.1e-29 131.0 82 84.1
Lalb_Chr16g0381071 Lupinus albus HOM05D004396 ORTHO05D005272 6.1e-29 131.0 85 80.0
Ca_25178_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 8.0e-29 130.6 82 82.9
Glyma.14G201900 Glycine max HOM05D004396 ORTHO05D005272 8.0e-29 130.6 83 81.9
Lsat_1_v5_gn_3_19181 Lactuca sativa HOM05D004396 ORTHO05D005272 1.0e-28 130.2 82 82.9
Lj2g0004535 Lotus japonicus HOM05D004396 ORTHO05D005272 1.0e-28 130.2 85 77.6
ECA240G0984 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.8e-28 129.4 82 82.9
HanXRQChr06g0172781 Helianthus annuus HOM05D004396 ORTHO05D005272 1.8e-28 129.4 82 82.9
Nitab4.5_0000556g0250 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.8e-28 129.4 82 82.9
Nitab4.5_0004528g0030 Nicotiana tabacum HOM05D004396 ORTHO05D005272 1.8e-28 129.4 82 82.9
SGA_v2.0_scaffold36G14295 Striga asiatica HOM05D004396 ORTHO05D005272 1.8e-28 129.4 82 80.5
Gohir.A12G206100 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-28 129.0 87 81.6
Gohir.D12G208400 Gossypium hirsutum HOM05D004396 ORTHO05D005272 2.3e-28 129.0 87 81.6
Gorai.008G224000 Gossypium raimondii HOM05D004396 ORTHO05D005272 2.3e-28 129.0 87 81.6
Prupe.8G007900 Prunus persica HOM05D004396 ORTHO05D005272 2.3e-28 129.0 83 80.7
unitig_899.g15442 Utricularia gibba HOM05D004396 ORTHO05D005272 5.2e-28 127.9 86 79.1
CDE08G0196 Ceratophyllum demersum HOM05D004396 ORTHO05D005272 6.7e-28 127.5 82 79.3
Gohir.A03G000033 Gossypium hirsutum HOM05D004396 ORTHO05D005272 6.7e-28 127.5 82 84.1
SGA_v2.0_scaffold198G41072 Striga asiatica HOM05D004396 ORTHO05D005272 6.7e-28 127.5 82 80.5
FAN24G1987 Fragaria x ananassa HOM05D004396 ORTHO05D005272 8.8e-28 127.1 82 79.3
MD05G1007700 Malus domestica HOM05D004396 ORTHO05D005272 8.8e-28 127.1 82 80.5
Medtr3g023120 Medicago truncatula HOM05D004396 ORTHO05D005272 8.8e-28 127.1 85 77.6
Psat5g213400 Pisum sativum HOM05D004396 ORTHO05D005272 8.8e-28 127.1 85 77.6
Prupe.4G286900 Prunus persica HOM05D004396 ORTHO05D005272 8.8e-28 127.1 94 75.5
MD10G1005100 Malus domestica HOM05D004396 ORTHO05D005272 1.1e-27 126.7 82 80.5
PGSC0003DMG400018505 Solanum tuberosum HOM05D004396 ORTHO05D005272 1.1e-27 126.7 86 77.9
RcHm_v2.0_Chr6g0251281 Rosa chinensis HOM05D004396 ORTHO05D005272 1.5e-27 126.3 82 80.5
FAN20G1930 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.0e-27 125.9 82 78.0
FAN27G1914 Fragaria x ananassa HOM05D004396 ORTHO05D005272 2.0e-27 125.9 82 78.0
Glyma.09G207800 Glycine max HOM05D004396 ORTHO05D005272 2.6e-27 125.6 76 85.5
Ca_27048_v3 Cicer arietinum L. HOM05D004396 ORTHO05D005272 3.3e-27 125.2 82 79.3
Migut.A01174 Erythranthe guttata HOM05D004396 ORTHO05D005272 4.4e-27 124.8 89 74.2
HPP92_025493 Vanilla planifolia HOM05D004396 ORTHO05D005272 5.7e-27 124.4 85 77.6
TPR.G19425 Trifolium pratense HOM05D004396 ORTHO05D005272 7.4e-27 124.0 92 71.7
FvH4_2g00930 Fragaria vesca HOM05D004396 ORTHO05D005272 1.7e-26 122.9 80 77.5
HPP92_025445 Vanilla planifolia HOM05D004396 ORTHO05D005272 2.2e-26 122.5 85 76.5
Os04g0397000 Oryza sativa ssp. japonica HOM05D004396 ORTHO05D005272 2.8e-26 122.1 82 81.7
SEGI_22391 Sequoiadendron giganteum HOM05D004396 ORTHO05D005272 3.7e-26 121.7 92 66.3
TPR.G31993 Trifolium pratense HOM05D004396 ORTHO05D005272 3.7e-26 121.7 85 75.3
Sc24g0004110 Simmondsia chinensis HOM05D004396 ORTHO05D005272 4.8e-26 121.3 73 89.0
Ah.02g116090 Amaranthus hybridus HOM05D002241 ORTHO05D002458 6.3e-26 120.9 74 86.5
EL10Ac5g11811 Beta vulgaris HOM05D004396 ORTHO05D005272 6.3e-26 120.9 121 61.2
Lj4g0004552 Lotus japonicus HOM05D004396 ORTHO05D005272 6.3e-26 120.9 82 76.8
Medtr5g029240 Medicago truncatula HOM05D004396 ORTHO05D005272 8.2e-26 120.6 79 77.2
Zm00001eb379050 Zea mays HOM05D004396 ORTHO05D005272 2.4e-25 119.0 82 79.3
Aa31LG2G13800 Aethionema arabicum HOM05D004396 ORTHO05D005272 9.1e-25 117.1 83 74.7
SalBow1G7612 Salvia bowleyana HOM05D004396 ORTHO05D005272 1.2e-24 116.7 83 78.3
Atru.chr6.1524 Acer truncatum HOM05D004396 ORTHO05D005272 2.6e-24 115.5 70 85.7
SMO117G0136 Selaginella moellendorffii HOM05D004396 ORTHO05D005272 1.3e-23 113.2 78 71.8
Gohir.D03G176200 Gossypium hirsutum HOM05D004396 ORTHO05D005272 1.7e-23 112.8 70 87.1
AagrBONN_evm.TU.Sc2ySwM_362.1218 Anthoceros agrestis HOM05D000444 ORTHO05D000489 5.0e-23 111.3 85 67.1
Mapoly0046s0003 Marchantia polymorpha HOM05D004396 ORTHO05D005272 6.5e-23 110.9 81 67.9
FAN15G2154 Fragaria x ananassa HOM05D004396 ORTHO05D005272 9.4e-22 107.1 70 77.1
Pp3c2_30990 Physcomitrium patens HOM05D004396 ORTHO05D005272 1.2e-21 106.7 78 62.8
Pp3c1_6120 Physcomitrium patens HOM05D004396 ORTHO05D005272 2.0e-19 99.4 71 69.0
Peaxi162Scf00045g00321 Petunia axillaris HOM05D004396 ORTHO05D005272 3.7e-18 95.1 58 81.0
Migut.E00744 Erythranthe guttata HOM05D004396 ORTHO05D005272 2.0e-16 89.4 57 80.7
A08p09310 Brassica napus HOM05D004396 ORTHO05D005272 1.6e-13 79.7 76 60.5
BraA08t32929Z Brassica rapa HOM05D004396 ORTHO05D005272 1.6e-13 79.7 76 60.5
Cfa012506 Carpinus fangiana HOM05D004396 ORTHO05D005272 1.8e-12 76.3 51 74.5
CAN.G1987.1 Capsicum annuum HOM05D004396 ORTHO05D005272 5.2e-12 74.7 42 83.3
MBI02_g15155_MAGBIO Magnolia biondii HOM05D004396 ORTHO05D005272 8.8e-12 73.9 41 87.8
Hund15006 Selenicereus undatus HOM05D004396 ORTHO05D005272 1.2e-11 73.6 44 81.8
C03p12000 Brassica napus HOM05D004396 ORTHO05D023989 3.4e-11 72.0 51 72.5
Cre02.g108400 Chlamydomonas reinhardtii HOM05D004396 ORTHO05D005272 9.8e-11 70.5 70 45.7
BolC8t47998H Brassica oleracea HOM05D004396 ORTHO05D005272 1.7e-10 69.7 74 58.1
Psat2g139040 Pisum sativum HOM05D004396 ORTHO05D005272 2.8e-10 68.9 38 86.8
A09p33990 Brassica napus HOM05D004396 ORTHO05D005272 3.7e-10 68.6 46 78.3
CBR_g15971 Chara braunii HOM05D004396 ORTHO05D005272 2.4e-09 65.9 78 47.4
C05p39130 Brassica napus HOM05D004396 ORTHO05D005272 4.1e-09 65.1 45 73.3
BolC5t32648H Brassica oleracea HOM05D004396 ORTHO05D005272 4.1e-09 65.1 45 73.3
RcHm_v2.0_Chr6g0251331 Rosa chinensis HOM05D004396 ORTHO05D005272 2.3e-07 59.3 57 59.6
RcHm_v2.0_Chr6g0251311 Rosa chinensis HOM05D004396 ORTHO05D005272 1.1e-06 57.0 41 75.6
TPR.G36203 Trifolium pratense HOM05D004396 ORTHO05D005272 4.2e-06 55.1 41 68.3


User provided reference genes

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