Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 9.8e-105 383.6 218 100.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 1.6e-35 153.7 214 50.9
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 4.8e-35 152.1 214 52.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 4.6e-30 135.6 216 44.4
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 6.7e-29 131.7 221 46.2
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 9.1e-26 121.3 220 44.1
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 9.4e-23 111.3 223 43.5
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 4.7e-22 109.0 211 40.8
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 5.2e-21 105.5 214 40.2
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 5.2e-21 105.5 215 38.1
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.3e-19 100.9 219 38.8
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 2.2e-19 100.1 217 37.8
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 2.8e-19 99.8 216 41.2
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 6.3e-19 98.6 211 37.0
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 8.2e-19 98.2 211 39.3
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.4e-18 97.4 215 37.7
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.8e-18 97.1 211 37.0
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.8e-18 97.1 210 43.3
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 2.4e-18 96.7 217 35.5
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 2.4e-18 96.7 220 39.1
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.4e-18 96.7 216 36.1
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 3.1e-18 96.3 215 36.7
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 7.0e-18 95.1 214 42.1
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 9.1e-18 94.7 174 42.0
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.6e-17 94.0 212 40.6
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.6e-17 93.2 211 43.6
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 7.7e-17 91.7 211 35.1
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 7.7e-17 91.7 211 37.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 2.2e-16 90.1 216 37.5
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 3.8e-16 89.4 165 37.6
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 3.8e-16 89.4 216 37.0
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 8.5e-16 88.2 218 37.2
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 1.1e-15 87.8 213 33.8
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.2e-15 86.3 210 34.8
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.2e-15 86.3 215 35.3
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 4.2e-15 85.9 213 37.6
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 7.2e-15 85.1 217 35.9
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 9.4e-15 84.7 215 34.9
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 1.6e-14 84.0 222 33.8
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.6e-14 84.0 221 35.7
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 6.1e-14 82.0 214 35.0
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.8e-13 80.5 211 41.2
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.3e-13 80.1 207 32.4
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 6.7e-13 78.6 209 34.0
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 8.8e-13 78.2 216 36.6
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 1.2e-12 77.8 217 34.1
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 2.6e-12 76.6 211 35.5
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 3.3e-12 76.3 127 40.2
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.3e-11 74.3 225 34.2
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.7e-11 73.9 225 33.8
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.7e-11 73.9 225 33.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.2e-11 73.6 219 34.2
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.2e-11 73.6 209 36.8
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 2.2e-11 73.6 205 33.7
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 8.2e-11 71.6 212 34.9
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 1.4e-10 70.9 209 36.8
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.4e-10 70.9 209 31.6
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.1e-10 69.3 210 38.1
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 4.1e-10 69.3 217 30.0
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 4.1e-10 69.3 209 37.3
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 4.1e-10 69.3 209 32.1
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 9.1e-10 68.2 221 37.6
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.5e-09 65.9 209 34.4
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.5e-09 65.9 209 32.5
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 7.7e-09 65.1 209 30.6
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 7.7e-09 65.1 218 36.7
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.3e-08 64.3 148 35.1
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 2.2e-08 63.5 81 44.4
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 3.8e-08 62.8 153 39.9
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 5.0e-08 62.4 214 29.0
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 8.5e-08 61.6 82 39.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.5e-07 60.1 212 35.4
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 2.5e-07 60.1 210 35.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 3.2e-07 59.7 218 28.4
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 4.2e-07 59.3 210 29.5
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 4.2e-07 59.3 40 65.0
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 7.2e-07 58.5 209 30.1
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 1.2e-06 57.8 220 29.5
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.6e-06 57.4 222 30.2
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 2.1e-06 57.0 212 34.9
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 2.1e-06 57.0 218 27.5
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 2.7e-06 56.6 216 34.7
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 4.7e-06 55.8 212 31.6
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 4.7e-06 55.8 210 30.5
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 6.1e-06 55.5 209 28.7
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 8.0e-06 55.1 170 28.8


User provided reference genes

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