Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.3e-263 912.5 473 100.0
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 6.4e-202 707.6 474 77.0
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 1.8e-183 646.4 474 70.5
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 7.4e-182 641.0 474 70.0
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.2e-179 633.6 484 68.8
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 9.1e-172 607.4 479 67.6
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 3.4e-171 605.5 479 67.4
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.1e-169 600.5 475 65.5
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 3.2e-169 599.0 471 65.6
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 1.2e-168 597.0 471 67.3
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.2e-165 586.3 473 64.9
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.2e-163 580.5 468 67.3
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.5e-163 580.1 473 63.4
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 4.2e-161 572.0 473 64.5
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 1.0e-159 567.4 471 63.5
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.9e-159 565.5 457 64.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 3.9e-159 565.5 465 63.7
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 8.2e-157 557.8 474 62.0
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 1.8e-156 556.6 467 62.7
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 3.1e-156 555.8 468 62.2
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 4.1e-156 555.4 467 63.2
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 2.0e-155 553.1 462 62.6
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.6e-155 552.7 472 62.9
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 4.5e-155 552.0 472 63.3
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.1e-153 547.4 467 62.5
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.2e-152 543.9 473 58.6
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 3.6e-152 542.3 473 62.6
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.8e-151 540.0 432 65.5
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 3.0e-151 539.3 460 62.6
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.7e-150 535.0 473 58.8
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 7.5e-150 534.6 467 60.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.7e-149 533.5 473 58.6
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 3.7e-149 532.3 474 58.6
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 4.8e-149 531.9 472 59.5
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.1e-148 530.8 475 60.2
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.4e-148 529.6 476 59.0
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.4e-148 529.6 475 60.6
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.3e-148 528.5 472 60.8
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.2e-147 527.3 471 58.2
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.5e-147 525.4 473 58.8
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.5e-145 520.4 696 45.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.9e-145 520.0 469 58.8
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.6e-144 516.9 475 56.4
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.6e-144 516.9 468 56.6
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 6.1e-144 515.0 473 57.3
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 5.2e-143 511.9 468 58.1
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.5e-142 510.4 465 58.3
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 2.0e-142 510.0 477 57.7
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 5.7e-142 508.4 476 55.9
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.7e-141 506.9 468 58.1
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.7e-141 506.9 468 58.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.8e-141 506.1 472 57.2
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 2.8e-141 506.1 476 55.9
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 6.3e-141 505.0 469 58.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 6.3e-141 505.0 385 66.2
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 8.3e-141 504.6 477 57.4
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 8.3e-141 504.6 468 57.7
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.4e-140 503.8 468 57.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.4e-140 503.8 477 56.0
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 4.1e-140 502.3 441 61.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.2e-139 500.7 469 56.3
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.0e-138 497.7 468 57.5
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 2.3e-138 496.5 476 56.1
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 4.7e-136 488.8 474 56.8
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.0e-135 487.6 416 62.0
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.8e-135 486.9 476 56.1
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-134 483.8 476 56.1
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 2.6e-134 483.0 400 64.0
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 5.7e-134 481.9 473 56.7
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.1e-132 475.7 381 64.3
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 3.5e-131 472.6 450 58.9
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.5e-129 467.2 468 53.4
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 9.5e-129 464.5 467 53.7
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.0e-127 461.1 437 56.1
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 4.9e-125 452.2 396 59.8
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.4e-124 448.7 506 50.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.6e-123 447.2 553 46.8
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 3.9e-122 442.6 401 58.1
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.9e-122 442.6 538 49.4
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.8e-119 433.7 470 52.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-119 433.3 455 51.6
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 7.5e-118 428.3 442 53.6
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 9.8e-118 427.9 322 65.8
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 2.1e-115 420.2 393 57.8
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 3.5e-115 419.5 417 54.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 6.6e-114 415.2 468 50.9
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 6.2e-112 408.7 391 57.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.0e-111 406.0 491 48.3
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 1.5e-110 404.1 291 67.7
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.4e-108 397.5 355 58.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.1e-108 396.0 467 48.2
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 9.2e-108 394.8 419 53.7
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.9e-105 387.1 510 49.6
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-104 384.0 375 55.5
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.1e-103 379.8 493 48.1
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.8e-103 378.6 291 62.9
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 5.8e-102 375.6 364 55.5
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.7e-101 374.0 416 51.9
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.4e-100 370.9 485 48.0
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 7.8e-99 365.2 285 62.8
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.9e-92 344.0 254 65.7
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.6e-91 339.3 264 62.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 5.3e-87 325.9 298 58.1
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 5.3e-87 325.9 343 52.5
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.5e-86 324.3 481 43.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.5e-83 313.2 325 55.4
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 2.4e-79 300.4 228 62.3
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 1.2e-75 288.1 386 45.9
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.3e-74 283.9 242 59.5
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 3.0e-74 283.5 445 38.4
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 3.9e-74 283.1 525 37.7
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.3e-73 280.0 320 54.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 1.8e-66 257.7 296 48.6
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 7.7e-62 242.3 169 69.2
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.5e-60 237.3 312 47.8
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.6e-59 233.4 211 64.0
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.6e-49 200.7 159 59.7
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 5.7e-49 199.5 457 34.6
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-45 188.3 181 57.5
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 8.5e-45 185.7 118 75.4
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 9.7e-41 172.2 556 30.2
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.7e-40 170.2 566 29.9
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 9.1e-31 139.0 375 30.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.0e-29 135.6 159 48.4
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-26 125.6 173 47.4
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 1.4e-23 115.2 149 49.0
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.6e-22 111.7 68 82.4
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 3.5e-22 110.5 107 53.3
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.0e-21 109.0 121 45.5
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.7e-21 108.2 126 45.2
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-21 108.2 145 46.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.9e-21 107.5 198 41.4
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 6.8e-18 96.3 84 54.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.8e-16 90.9 75 62.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.8e-16 90.9 75 62.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.3e-16 89.7 75 61.3
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-15 89.0 82 56.1
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.4e-15 86.7 75 61.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 6.6e-13 79.7 54 72.2
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 6.6e-13 79.7 54 68.5
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 6.6e-13 79.7 85 54.1
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 4.9e-08 63.5 46 69.6
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.4e-07 60.1 47 59.6
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 4.6e-06 57.0 52 59.6


User provided reference genes

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