Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.4e-111 406.4 213 100.0
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.1e-55 219.2 215 60.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.9e-52 209.9 220 56.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.7e-51 206.1 186 64.5
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 4.0e-50 202.2 233 51.9
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.3e-48 197.2 215 54.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.8e-48 195.3 218 54.6
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 1.4e-47 193.7 227 52.9
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 1.8e-47 193.4 230 53.0
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 5.3e-47 191.8 239 51.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 7.0e-47 191.4 238 50.4
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 7.0e-47 191.4 238 50.4
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 4.5e-46 188.7 239 50.6
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.7e-46 188.0 225 53.3
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-45 187.2 232 50.9
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 1.3e-45 187.2 232 50.9
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.7e-45 186.8 231 51.5
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 1.7e-45 186.8 238 54.2
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.7e-45 186.8 239 48.5
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.5e-45 184.5 225 52.4
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.5e-45 184.5 215 51.2
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.5e-45 184.5 215 51.2
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 8.5e-45 184.5 229 50.2
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.5e-44 183.7 218 50.5
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.5e-44 183.7 221 52.5
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.5e-44 181.8 240 50.8
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 9.4e-44 181.0 231 53.7
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-43 180.6 228 51.8
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 1.6e-43 180.3 233 48.1
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.7e-43 179.5 251 48.6
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 4.7e-43 178.7 229 49.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.0e-42 177.6 232 50.0
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.0e-42 177.6 245 50.6
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.8e-42 176.8 240 43.8
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.8e-42 176.8 229 49.8
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 5.2e-42 175.3 223 48.0
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 6.8e-42 174.9 236 52.1
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 8.8e-42 174.5 231 49.4
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 8.8e-42 174.5 248 49.2
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 1.2e-41 174.1 223 48.4
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.2e-41 174.1 238 42.0
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.5e-41 173.7 238 41.6
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.5e-41 173.7 248 48.8
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 4.4e-41 172.2 215 52.1
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 4.4e-41 172.2 240 47.9
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.8e-41 171.0 250 49.6
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 9.8e-41 171.0 239 50.2
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 9.8e-41 171.0 232 47.8
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.7e-40 170.2 216 45.8
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.2e-40 169.9 238 40.8
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 2.8e-40 169.5 238 42.9
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-40 169.1 238 40.8
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 3.7e-40 169.1 241 46.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 4.8e-40 168.7 222 54.1
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 8.3e-40 167.9 219 48.4
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 1.1e-39 167.5 224 52.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.4e-39 167.2 226 50.9
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.8e-39 166.8 226 50.4
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.4e-39 166.4 253 46.2
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.4e-39 165.2 225 47.6
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 5.4e-39 165.2 244 46.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 5.4e-39 165.2 211 47.9
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.0e-39 164.9 225 44.0
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.0e-39 164.9 226 49.1
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 9.1e-39 164.5 230 44.8
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 9.1e-39 164.5 236 46.2
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.0e-38 163.3 236 47.0
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.5e-38 162.5 211 51.7
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 7.7e-38 161.4 244 45.1
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.3e-37 160.6 228 45.6
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 2.2e-37 159.8 214 49.5
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 2.9e-37 159.5 226 48.7
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 3.8e-37 159.1 255 45.1
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.5e-36 157.1 233 47.2
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 1.5e-36 157.1 238 42.9
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.5e-36 156.4 228 47.8
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 4.2e-36 155.6 250 48.0
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.2e-36 154.8 144 61.1
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 9.4e-36 154.5 218 43.6
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-35 154.1 208 50.5
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 3.6e-35 152.5 235 43.8
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.6e-35 152.5 228 46.9
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.6e-35 152.5 229 41.0
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.8e-34 147.9 211 46.4
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.5e-33 147.1 229 40.6
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 7.5e-33 144.8 217 43.8
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 9.8e-33 144.4 209 39.2
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.3e-32 144.1 233 39.9
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.2e-32 143.3 237 43.0
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 3.7e-32 142.5 253 43.9
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.9e-32 142.1 262 41.6
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 8.3e-32 141.4 189 47.6
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 1.4e-31 140.6 206 47.1
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 5.4e-31 138.7 255 42.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 3.5e-30 136.0 236 38.1
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.1e-28 131.0 225 41.8
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 1.5e-28 130.6 181 50.3
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.9e-28 130.2 222 39.2
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 5.6e-28 128.6 185 45.4
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.6e-27 127.1 227 39.2
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.0e-26 122.9 202 44.6
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.0e-26 122.5 221 39.4
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 8.9e-26 121.3 233 43.3
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-25 120.9 221 42.1
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.5e-25 120.6 217 43.3
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.5e-25 120.6 217 43.3
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 3.4e-25 119.4 223 36.3
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 9.8e-25 117.9 215 36.7
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.7e-24 117.1 232 34.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.2e-24 116.7 212 40.1
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.9e-24 116.3 252 34.1
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.9e-24 115.5 229 40.2
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.9e-24 115.5 216 39.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 6.4e-24 115.2 221 38.0
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 6.4e-24 115.2 221 38.0
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.4e-23 114.0 196 42.3
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.4e-23 113.2 221 37.6
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 3.2e-23 112.8 223 38.6
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 4.1e-23 112.5 212 39.2
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 5.4e-23 112.1 213 39.9
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 5.4e-23 112.1 213 39.9
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 5.4e-23 112.1 213 39.9
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.7e-22 109.8 206 37.9
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 3.5e-22 109.4 226 42.9
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.0e-21 107.8 211 36.5
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 2.3e-21 106.7 202 37.1
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 8.6e-21 104.8 201 36.8
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.1e-20 104.4 226 37.6
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.5e-20 104.0 239 32.2
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.5e-20 103.2 220 35.9
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.3e-20 102.8 209 36.4
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.3e-20 102.8 190 37.4
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.3e-20 102.8 190 37.4
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 3.3e-20 102.8 131 50.4
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 4.3e-20 102.4 223 36.8
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.3e-20 102.4 223 36.8
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.6e-19 100.5 197 33.0
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 8.0e-19 98.2 215 34.4
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.4e-18 97.4 229 37.1
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 1.8e-18 97.1 216 33.3
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 5.2e-18 95.5 208 35.6
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.4e-17 92.8 208 31.2
Nn6g33581 Nelumbo nucifera HOM05D004742 ORTHO05D005677 1.4e-15 87.4 74 59.5
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.2e-14 84.3 149 40.9
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.5e-14 82.8 117 49.6
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 3.5e-14 82.8 158 35.4
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 1.0e-13 81.3 104 42.3
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 3.0e-13 79.7 105 41.0
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.5e-12 76.6 106 44.3
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 4.3e-12 75.9 203 33.5
CDE02G3549 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.6e-11 73.9 146 34.9
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 6.8e-10 68.6 196 31.1
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 4.4e-09 65.9 123 43.1
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.7e-08 63.9 194 35.6
SEGI_26556 Sequoiadendron giganteum HOM05D004568 ORTHO05D005343 2.4e-07 60.1 283 31.8
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 1.2e-06 57.8 88 51.1
Nn6g35755 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.7e-06 56.6 61 54.1


User provided reference genes

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