Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00078 Nelumbo nucifera HOM05D003297 ORTHO05D004027 7.3e-98 360.5 178 100.0
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.5e-42 176.0 107 86.0
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.3e-41 173.7 108 85.2
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 1.2e-39 167.2 108 78.7
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 2.2e-38 162.9 110 74.5
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 3.8e-38 162.2 119 68.9
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 7.1e-37 157.9 110 71.8
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 1.6e-36 156.8 108 73.1
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 1.6e-36 156.8 108 75.9
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 1.8e-35 153.3 108 72.2
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 8.7e-35 151.0 110 71.8
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 8.7e-35 151.0 112 72.3
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 1.1e-34 150.6 110 69.1
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 1.5e-34 150.2 108 67.6
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 3.3e-34 149.1 110 70.0
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 4.3e-34 148.7 108 66.7
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 4.3e-34 148.7 110 70.9
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 5.7e-34 148.3 108 74.1
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 5.7e-34 148.3 108 69.4
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 7.4e-34 147.9 110 70.0
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 1.3e-33 147.1 110 70.0
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 1.3e-33 147.1 108 72.2
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 1.3e-33 147.1 108 68.5
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 1.6e-33 146.7 108 70.4
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 2.2e-33 146.4 108 70.4
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 2.8e-33 146.0 108 69.4
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 2.8e-33 146.0 108 73.1
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 3.7e-33 145.6 110 70.9
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 6.3e-33 144.8 108 70.4
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 8.2e-33 144.4 108 65.7
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 8.2e-33 144.4 108 73.1
PSO541G1735 Papaver somniferum HOM05D003297 ORTHO05D004027 8.2e-33 144.4 105 71.4
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 1.1e-32 144.1 108 68.5
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 1.4e-32 143.7 110 67.3
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 1.4e-32 143.7 110 67.3
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 1.4e-32 143.7 110 67.3
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 2.4e-32 142.9 108 67.6
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 2.4e-32 142.9 127 61.4
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 3.1e-32 142.5 108 67.6
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 4.1e-32 142.1 108 71.3
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 4.1e-32 142.1 108 68.5
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 4.1e-32 142.1 108 68.5
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 4.1e-32 142.1 122 62.3
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 9.0e-32 141.0 120 65.8
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 2.0e-31 139.8 108 68.5
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 2.0e-31 139.8 110 67.3
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 3.4e-31 139.0 108 67.6
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 3.4e-31 139.0 108 65.7
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 4.5e-31 138.7 108 67.6
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 4.5e-31 138.7 108 71.3
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 7.6e-31 137.9 110 66.4
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.0e-30 137.5 108 70.4
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 1.3e-30 137.1 108 66.7
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 1.7e-30 136.7 108 65.7
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 1.7e-30 136.7 108 70.4
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 1.7e-30 136.7 108 65.7
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 2.2e-30 136.3 108 68.5
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 2.9e-30 136.0 108 69.4
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 2.9e-30 136.0 108 67.6
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 5.0e-30 135.2 108 67.6
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 6.5e-30 134.8 108 65.7
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 6.5e-30 134.8 108 65.7
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 8.5e-30 134.4 108 63.0
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 2.5e-29 132.9 110 66.4
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 4.2e-29 132.1 108 65.7
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 5.5e-29 131.7 108 61.1
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 7.2e-29 131.3 117 64.1
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 9.3e-29 131.0 108 68.5
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 1.2e-28 130.6 108 64.8
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 1.2e-28 130.6 110 67.3
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 1.6e-28 130.2 110 64.5
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 2.1e-28 129.8 110 61.8
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 2.1e-28 129.8 109 63.3
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 4.6e-28 128.6 108 63.0
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 6.1e-28 128.3 114 60.5
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 6.1e-28 128.3 110 64.5
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 7.9e-28 127.9 108 63.9
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 1.0e-27 127.5 108 63.9
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 3.9e-27 125.6 110 64.5
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 5.1e-27 125.2 108 60.2
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 5.1e-27 125.2 108 61.1
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 5.1e-27 125.2 108 63.0
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 5.1e-27 125.2 108 59.3
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 5.1e-27 125.2 108 62.0
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 8.8e-27 124.4 108 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 1.1e-26 124.0 108 61.1
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 1.1e-26 124.0 108 63.0
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 1.1e-26 124.0 110 56.4
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 1.1e-26 124.0 110 56.4
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 1.1e-26 124.0 108 59.3
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 1.1e-26 124.0 108 60.2
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 1.5e-26 123.6 108 63.9
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 1.9e-26 123.2 110 60.0
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 3.3e-26 122.5 108 59.3
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 4.3e-26 122.1 108 58.3
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 4.3e-26 122.1 108 59.3
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 5.7e-26 121.7 108 63.0
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 5.7e-26 121.7 103 64.1
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 5.7e-26 121.7 108 60.2
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 7.4e-26 121.3 111 61.3
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 9.7e-26 120.9 108 59.3
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 9.7e-26 120.9 108 59.3
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 9.7e-26 120.9 110 59.1
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 1.3e-25 120.6 108 59.3
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 1.3e-25 120.6 114 58.8
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 1.7e-25 120.2 108 61.1
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 1.7e-25 120.2 101 65.3
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 2.8e-25 119.4 108 58.3
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 3.7e-25 119.0 108 60.2
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 3.7e-25 119.0 108 59.3
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 1.1e-24 117.5 108 56.5
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 3.1e-24 115.9 110 57.3
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 4.1e-24 115.5 108 57.4
SGA_v2.0_scaffold857G53675 Striga asiatica HOM05D003297 ORTHO05D004027 6.9e-24 114.8 80 73.8
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 9.1e-24 114.4 110 56.4
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 2.6e-23 112.8 108 57.4
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 2.6e-23 112.8 108 57.4
CDE07G1941 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 2.6e-23 112.8 89 66.3
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 3.4e-23 112.5 108 57.4
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 3.4e-23 112.5 108 57.4
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 3.4e-23 112.5 133 50.4
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 1.0e-22 110.9 108 56.5
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 2.2e-22 109.8 108 56.5
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 2.9e-22 109.4 108 55.6
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 4.7e-20 102.1 95 63.2
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 4.7e-20 102.1 110 53.6
Cc00_g35860 Coffea canephora HOM05D003297 ORTHO05D004027 7.9e-20 101.3 80 67.5
FAN14G1208 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.0e-19 100.9 81 63.0
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 3.0e-19 99.4 109 52.3
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 3.9e-19 99.0 110 50.0
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 6.7e-19 98.2 112 50.9
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 6.7e-19 98.2 109 54.1
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 8.8e-19 97.8 82 67.1
CARHR103230 Cardamine hirsuta HOM05D003297 ORTHO05D004027 9.7e-18 94.4 71 64.8
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 2.8e-17 92.8 80 66.2
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 3.7e-17 92.4 107 51.4
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 8.2e-17 91.3 81 58.0
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 1.2e-15 87.4 79 63.3
HanXRQChr17g0534581 Helianthus annuus HOM05D003297 ORTHO05D004027 1.5e-15 87.0 74 66.2
FAN01G2972 Fragaria x ananassa HOM05D003297 ORTHO05D004027 4.5e-15 85.5 97 52.6
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 5.9e-15 85.1 88 63.6
Lsat_1_v5_gn_2_17820 Lactuca sativa HOM05D003297 ORTHO05D004027 1.0e-14 84.3 68 66.2
Potri.017G066200 Populus trichocarpa HOM05D003297 ORTHO05D004027 3.8e-14 82.4 96 55.2
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 6.5e-14 81.6 83 60.2
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 9.4e-13 77.8 84 60.7
FAN10G0806 Fragaria x ananassa HOM05D003297 ORTHO05D004027 1.6e-12 77.0 74 55.4
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 2.1e-12 76.6 83 60.2
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 2.1e-12 76.6 83 60.2
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.1e-12 76.6 83 60.2
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.1e-12 76.6 83 60.2
C02p06630 Brassica napus HOM05D003297 ORTHO05D004027 2.7e-12 76.3 122 42.6
EL10Ac9g22681 Beta vulgaris HOM05D003297 ORTHO05D004027 6.1e-12 75.1 67 58.2
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 6.1e-12 75.1 83 60.2
FAN06G2104 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.3e-11 73.2 85 52.9
FAN06G1012 Fragaria x ananassa HOM05D003297 ORTHO05D004027 3.0e-11 72.8 85 52.9
Nn6g34769 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.0e-10 70.1 95 53.7
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 7.4e-10 68.2 82 47.6
Cre06.g291900 Chlamydomonas reinhardtii HOM05D003297 ORTHO05D004027 2.2e-09 66.6 108 40.7
HanXRQChr17g0550181 Helianthus annuus HOM05D003297 ORTHO05D004027 2.8e-09 66.2 50 66.0
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 5.3e-08 62.0 56 60.7
Lsat_1_v5_gn_1_126600 Lactuca sativa HOM05D003297 ORTHO05D004027 3.5e-07 59.3 53 60.4
MCO09G068 Micromonas commoda HOM05D003297 ORTHO05D004027 3.5e-07 59.3 116 36.2
BcaC02g10143 Brassica carinata HOM05D002632 ORTHO05D000523 2.2e-06 56.6 67 50.7


User provided reference genes

Program Settings