Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00039 Nelumbo nucifera HOM05D004338 ORTHO05D005205 3.7e-79 298.1 147 100.0
Nn1g02553 Nelumbo nucifera HOM05D004338 ORTHO05D005205 9.0e-78 293.5 144 100.0
TAR365G0259 Trochodendron aralioides HOM05D004338 ORTHO05D005205 4.2e-75 284.6 145 93.8
Dinv44613 Davidia involucrata HOM05D004338 ORTHO05D005205 4.6e-74 281.2 145 92.4
Actinidia08449 Actinidia chinensis HOM05D004338 ORTHO05D005205 6.0e-74 280.8 145 92.4
Atru.chr4.2282 Acer truncatum HOM05D004338 ORTHO05D005205 7.9e-74 280.4 145 91.7
Thecc.04G243900 Theobroma cacao HOM05D004338 ORTHO05D005205 1.0e-73 280.0 144 92.4
Duzib151G0366 Durio zibethinus HOM05D004338 ORTHO05D005205 1.3e-73 279.6 145 92.4
Manes.03G170100 Manihot esculenta HOM05D004338 ORTHO05D005205 3.0e-73 278.5 145 91.7
CAN.G626.12 Capsicum annuum HOM05D004338 ORTHO05D005205 3.9e-73 278.1 145 90.3
Nitab4.5_0004203g0030 Nicotiana tabacum HOM05D004338 ORTHO05D005205 3.9e-73 278.1 145 91.0
COL.COLO4_15767 Corchorus olitorius HOM05D004338 ORTHO05D005205 6.7e-73 277.3 145 90.3
Prupe.1G027100 Prunus persica HOM05D004338 ORTHO05D005205 6.7e-73 277.3 145 91.0
Solyc09g083260.4 Solanum lycopersicum HOM05D004338 ORTHO05D005205 6.7e-73 277.3 145 90.3
Cfa008398 Carpinus fangiana HOM05D004338 ORTHO05D005205 8.7e-73 276.9 145 91.7
Haze_11270 Corylus avellana HOM05D004338 ORTHO05D005205 8.7e-73 276.9 145 91.7
TWI09G1436 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 8.7e-73 276.9 145 89.7
Cpa.g.sc58.22 Carica papaya HOM05D004338 ORTHO05D005205 1.1e-72 276.6 145 90.3
Oeu003600.1 Olea europaea HOM05D004338 ORTHO05D005205 1.1e-72 276.6 145 89.0
Dinv14075 Davidia involucrata HOM05D004338 ORTHO05D005205 1.5e-72 276.2 145 91.7
Migut.G00416 Erythranthe guttata HOM05D004338 ORTHO05D005205 1.5e-72 276.2 145 89.7
TAR636G0266 Trochodendron aralioides HOM05D004338 ORTHO05D005205 1.5e-72 276.2 145 90.3
CsaV3_3G012690 Cucumis sativus L. HOM05D004338 ORTHO05D005205 2.5e-72 275.4 145 91.0
Eucgr.H00218 Eucalyptus grandis HOM05D004338 ORTHO05D005205 2.5e-72 275.4 145 90.3
Sopen09g032180 Solanum pennellii HOM05D004338 ORTHO05D005205 2.5e-72 275.4 145 89.7
CSS0020604 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 3.3e-72 275.0 145 89.7
GSVIVG01018095001 Vitis vinifera HOM05D004338 ORTHO05D005205 3.3e-72 275.0 145 91.0
RcHm_v2.0_Chr4g0389551 Rosa chinensis HOM05D004338 ORTHO05D005205 7.4e-72 273.9 145 89.0
ClCG05G004690 Citrullus lanatus HOM05D004338 ORTHO05D005205 9.6e-72 273.5 144 91.7
DCAR_002355 Daucus carota HOM05D004338 ORTHO05D005205 1.3e-71 273.1 145 89.0
MD13G1204000 Malus domestica HOM05D004338 ORTHO05D005205 1.6e-71 272.7 145 89.0
Peaxi162Scf01416g00020 Petunia axillaris HOM05D004338 ORTHO05D005205 1.6e-71 272.7 140 92.1
Gorai.011G170600 Gossypium raimondii HOM05D004338 ORTHO05D005205 2.1e-71 272.3 145 87.6
PGR142G2602 Punica granatum HOM05D004338 ORTHO05D005205 2.1e-71 272.3 145 89.7
Ciclev10004298m.g Citrus clementina HOM05D004338 ORTHO05D005205 2.8e-71 271.9 145 89.0
Lsat_1_v5_gn_5_67480 Lactuca sativa HOM05D004338 ORTHO05D005205 3.7e-71 271.6 145 89.0
Sc13g0004920 Simmondsia chinensis HOM05D004338 ORTHO05D005205 4.8e-71 271.2 145 86.2
Sabra08G0122500 Salix brachista HOM05D004338 ORTHO05D005205 6.2e-71 270.8 141 91.5
arahy.Tifrunner.gnm1.ann1.5I9I5Q Arachis hypogaea HOM05D004338 ORTHO05D005205 8.2e-71 270.4 145 86.9
arahy.Tifrunner.gnm1.ann1.EA06G0 Arachis hypogaea HOM05D004338 ORTHO05D005205 8.2e-71 270.4 145 86.9
Glyma.20G210700 Glycine max HOM05D004338 ORTHO05D005205 1.1e-70 270.0 145 89.0
Potri.008G160700 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.1e-70 270.0 142 91.5
CANSAT78G1672 Cannabis sativa HOM05D004338 ORTHO05D005205 1.4e-70 269.6 145 86.9
Lj5g0007630 Lotus japonicus HOM05D004338 ORTHO05D005205 1.4e-70 269.6 145 86.9
MBI04_g06839_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 1.4e-70 269.6 143 88.8
MSTRG.21887 Avicennia marina HOM05D004338 ORTHO05D005205 1.8e-70 269.2 145 86.9
Sed0024916 Sechium edule HOM05D004338 ORTHO05D005205 1.8e-70 269.2 145 89.0
ECA233G2689 Erigeron canadensis HOM05D004338 ORTHO05D005205 2.4e-70 268.9 145 87.6
VMungo0720G2420 Vigna mungo HOM05D004338 ORTHO05D005205 2.4e-70 268.9 145 88.3
MD16G1206000 Malus domestica HOM05D004338 ORTHO05D005205 3.1e-70 268.5 145 86.9
Phvul.003G138460 Phaseolus vulgaris HOM05D004338 ORTHO05D005205 4.0e-70 268.1 145 88.3
Cc00_g20710 Coffea canephora HOM05D004338 ORTHO05D005205 5.3e-70 267.7 145 86.9
FvH4_4g02230 Fragaria vesca HOM05D004338 ORTHO05D005205 5.3e-70 267.7 145 87.6
FAN12G0347 Fragaria x ananassa HOM05D004338 ORTHO05D005205 5.3e-70 267.7 145 87.6
Lalb_Chr02g0150011 Lupinus albus HOM05D004338 ORTHO05D005205 5.3e-70 267.7 145 86.9
Sabra10G0064800 Salix brachista HOM05D004338 ORTHO05D005205 6.9e-70 267.3 142 90.1
Gohir.A09G222100 Gossypium hirsutum HOM05D004338 ORTHO05D005205 9.0e-70 266.9 145 87.6
Gohir.D09G224200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 9.0e-70 266.9 145 87.6
Gorai.006G245700 Gossypium raimondii HOM05D004338 ORTHO05D005205 9.0e-70 266.9 145 87.6
Actinidia40096 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.2e-69 266.5 145 87.6
FAN22G2191 Fragaria x ananassa HOM05D004338 ORTHO05D005205 1.2e-69 266.5 145 86.9
Potri.010G078600 Populus trichocarpa HOM05D004338 ORTHO05D005205 1.5e-69 266.2 142 90.1
QL06p015078 Quercus lobata HOM05D004338 ORTHO05D005205 1.5e-69 266.2 145 87.6
EL10Ac4g09514 Beta vulgaris HOM05D004338 ORTHO05D005205 2.0e-69 265.8 145 84.8
Aqoxy102s001 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 2.6e-69 265.4 145 84.1
Aqoxy2G03524 Aquilegia oxysepala HOM05D004338 ORTHO05D005205 2.6e-69 265.4 145 84.1
CiPaw.02G117900 Carya illinoinensis HOM05D004338 ORTHO05D005205 3.4e-69 265.0 145 88.3
Ca_09879_v3 Cicer arietinum L. HOM05D004338 ORTHO05D005205 5.8e-69 264.2 145 85.5
Rhsim04G0194700 Rhododendron simsii HOM05D004338 ORTHO05D005205 5.8e-69 264.2 146 83.6
HanXRQChr12g0381191 Helianthus annuus HOM05D004338 ORTHO05D005205 1.0e-68 263.5 145 86.2
TWI73G0220 Tripterygium wilfordii HOM05D004338 ORTHO05D005205 1.3e-68 263.1 145 84.1
PSO238G0023 Papaver somniferum HOM05D004338 ORTHO05D005205 1.7e-68 262.7 145 82.8
AUR62000438 Chenopodium quinoa HOM05D004338 ORTHO05D005205 2.2e-68 262.3 145 83.4
PSO210G3643 Papaver somniferum HOM05D004338 ORTHO05D005205 3.8e-68 261.5 145 82.1
vmacro08400 Vaccinium macrocarpon HOM05D004338 ORTHO05D005205 6.5e-68 260.8 147 83.7
AUR62006783 Chenopodium quinoa HOM05D004338 ORTHO05D005205 1.9e-67 259.2 145 82.1
Medtr1g076330 Medicago truncatula HOM05D004338 ORTHO05D005205 3.2e-67 258.5 145 84.8
Glyma.10G179700 Glycine max HOM05D004338 ORTHO05D005205 7.1e-67 257.3 145 84.8
TPR.G14022 Trifolium pratense HOM05D004338 ORTHO05D005205 7.9e-66 253.8 145 80.0
RcHm_v2.0_Chr4g0389561 Rosa chinensis HOM05D004338 ORTHO05D005205 2.3e-65 252.3 145 82.1
Sp2g08530 Schrenkiella parvula HOM05D004338 ORTHO05D005205 5.1e-65 251.1 145 80.7
BcaC03g16592 Brassica carinata HOM05D004338 ORTHO05D005205 8.7e-65 250.4 145 80.7
A02p27940 Brassica napus HOM05D004338 ORTHO05D005205 8.7e-65 250.4 145 80.7
C02p44140 Brassica napus HOM05D004338 ORTHO05D005205 8.7e-65 250.4 145 80.7
BolC2t10456H Brassica oleracea HOM05D004338 ORTHO05D005205 8.7e-65 250.4 145 80.7
BraA02t07831Z Brassica rapa HOM05D004338 ORTHO05D005205 8.7e-65 250.4 145 80.7
Thhalv10003159m.g Eutrema salsugineum HOM05D004338 ORTHO05D005205 1.5e-64 249.6 145 80.7
Psat6g113560 Pisum sativum HOM05D004338 ORTHO05D005205 1.5e-64 249.6 145 81.4
CARHR179740 Cardamine hirsuta HOM05D004338 ORTHO05D005205 1.9e-64 249.2 145 81.4
Gohir.A09G057200 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.9e-64 249.2 145 81.4
BcaB07g30561 Brassica carinata HOM05D004338 ORTHO05D005205 3.3e-64 248.4 145 81.4
Gohir.D09G056400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 5.7e-64 247.7 145 80.0
Gorai.006G070000 Gossypium raimondii HOM05D004338 ORTHO05D005205 5.7e-64 247.7 145 80.0
Zm00001eb004780 Zea mays HOM05D004338 ORTHO05D005205 7.4e-64 247.3 145 80.7
Lalb_Chr03g0037911 Lupinus albus HOM05D004338 ORTHO05D005205 9.7e-64 246.9 145 78.6
AT5G43745 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 6.3e-63 244.2 139 83.5
AL8G16520 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 8.2e-63 243.8 139 82.7
Carub.0008s0490 Capsella rubella HOM05D004338 ORTHO05D005205 4.1e-62 241.5 139 82.7
Aa31LG5G3510 Aethionema arabicum HOM05D004338 ORTHO05D005205 6.9e-62 240.7 145 76.6
CDE03G0177 Ceratophyllum demersum HOM05D004338 ORTHO05D005205 2.6e-61 238.8 145 74.5
arahy.Tifrunner.gnm1.ann1.A4GDND Arachis hypogaea HOM05D004338 ORTHO05D005205 7.6e-61 237.3 145 77.2
arahy.Tifrunner.gnm1.ann1.1TW0Z8 Arachis hypogaea HOM05D004338 ORTHO05D005205 2.9e-60 235.3 145 76.6
Os03g0163100 Oryza sativa ssp. japonica HOM05D004338 ORTHO05D005205 3.8e-60 235.0 145 76.6
Gohir.A10G114400 Gossypium hirsutum HOM05D004338 ORTHO05D005205 1.6e-58 229.6 145 76.6
MD11G1069300 Malus domestica HOM05D004338 ORTHO05D005205 1.6e-58 229.6 146 78.1
ATR0665G279 Amborella trichopoda HOM05D004338 ORTHO05D005205 2.7e-58 228.8 145 70.3
Carub.0006s0174 Capsella rubella HOM05D004338 ORTHO05D005205 1.0e-57 226.9 140 76.4
CARHR210350 Cardamine hirsuta HOM05D004338 ORTHO05D005205 1.8e-57 226.1 141 72.3
AL6G12230 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 8.8e-57 223.8 140 75.0
BcaB08g35114 Brassica carinata HOM05D004338 ORTHO05D005205 3.3e-56 221.9 145 70.3
AT5G02940 Arabidopsis thaliana HOM05D004338 ORTHO05D005205 5.7e-56 221.1 140 73.6
MELO3C006480.2 Cucumis melo HOM05D004338 ORTHO05D005205 5.7e-56 221.1 120 90.8
Lj6C654G1 Lonicera japonica HOM05D004338 ORTHO05D005205 2.2e-55 219.2 121 85.1
BcaC07g41038 Brassica carinata HOM05D004338 ORTHO05D005205 3.7e-55 218.4 145 69.0
A09p57320 Brassica napus HOM05D004338 ORTHO05D005205 3.7e-55 218.4 145 69.0
C08p40410 Brassica napus HOM05D004338 ORTHO05D005205 3.7e-55 218.4 145 69.0
BolC8t51609H Brassica oleracea HOM05D004338 ORTHO05D005205 3.7e-55 218.4 145 69.0
BraA09t41125Z Brassica rapa HOM05D004338 ORTHO05D005205 3.7e-55 218.4 145 69.0
CSS0018059 Camellia sinensis var. sinensis HOM05D004338 ORTHO05D005205 5.9e-53 211.1 122 83.6
Hund21850 Selenicereus undatus HOM05D004338 ORTHO05D005205 6.5e-52 207.6 136 72.1
HPP92_009627 Vanilla planifolia HOM05D004338 ORTHO05D005205 3.6e-50 201.8 120 81.7
DCAR_024200 Daucus carota HOM05D004338 ORTHO05D005205 1.1e-48 196.8 121 76.0
Gohir.D10G152700 Gossypium hirsutum HOM05D004338 ORTHO05D005205 4.8e-47 191.4 145 66.2
RcHm_v2.0_Chr4g0389571 Rosa chinensis HOM05D004338 ORTHO05D005205 1.3e-44 183.3 111 79.3
AagrBONN_evm.TU.Sc2ySwM_117.2360 Anthoceros agrestis HOM05D004338 ORTHO05D005205 1.6e-42 176.4 145 55.2
SEGI_27587 Sequoiadendron giganteum HOM05D004338 ORTHO05D005205 6.1e-42 174.5 147 53.7
SGA_v2.0_scaffold101G29777 Striga asiatica HOM05D004338 ORTHO05D005205 1.8e-38 162.9 144 60.4
Pp3c17_14700 Physcomitrium patens HOM05D004338 ORTHO05D005205 5.3e-38 161.4 141 51.8
AagrBONN_evm.TU.Sc2ySwM_117.2350 Anthoceros agrestis HOM05D004338 ORTHO05D005205 5.9e-37 157.9 145 51.0
SMO174G0094 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 4.7e-34 148.3 141 48.9
SMO340G0070 Selaginella moellendorffii HOM05D004338 ORTHO05D005205 2.6e-32 142.5 124 51.6
unitig_748.g7312 Utricularia gibba HOM05D004338 ORTHO05D005205 5.3e-30 134.8 84 72.6
MBI04_g44053_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D005205 6.8e-25 117.9 57 93.0
Nitab4.5_0000525g0110 Nicotiana tabacum HOM05D004338 ORTHO05D005205 6.8e-25 117.9 60 95.0
SalBow2G1414 Salvia bowleyana HOM05D004338 ORTHO05D005205 1.8e-22 109.8 60 86.7
Actinidia04492 Actinidia chinensis HOM05D004338 ORTHO05D005205 1.0e-20 104.0 53 88.7
AL37U10030 Arabidopsis lyrata HOM05D004338 ORTHO05D005205 3.8e-20 102.1 80 66.2
Hund07295 Selenicereus undatus HOM05D004338 ORTHO05D005205 2.6e-16 89.4 52 78.8
CBR_g39046 Chara braunii HOM05D002530 ORTHO05D002802 2.3e-09 66.2 118 29.7
MBI04_g44218_MAGBIO Magnolia biondii HOM05D004338 ORTHO05D241364 2.4e-06 56.2 37 70.3
RcHm_v2.0_Chr4g0389581 Rosa chinensis HOM05D004338 ORTHO05D005205 2.4e-06 56.2 35 77.1
PSO782G3741 Papaver somniferum HOM05D002530 ORTHO05D002802 7.0e-06 54.7 121 25.6
MD08G1240900 Malus domestica HOM05D002530 ORTHO05D002802 9.2e-06 54.3 93 28.0
PSO063G5596 Papaver somniferum HOM05D002530 ORTHO05D002802 9.2e-06 54.3 121 25.6


User provided reference genes

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