Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn020s41507 Nelumbo nucifera HOM05D007755 ORTHO05D009866 1.3e-45 186.0 98 100.0
Nn082s42679 Nelumbo nucifera HOM05D007755 ORTHO05D009866 1.3e-45 186.0 98 100.0
Nn287s46147 Nelumbo nucifera HOM05D007755 ORTHO05D009866 1.3e-45 186.0 98 100.0
MD11G1068400 Malus domestica HOM05D007755 ORTHO05D009866 1.5e-33 146.0 102 77.5
RcHm_v2.0_CPg0502301 Rosa chinensis HOM05D007755 ORTHO05D009866 7.7e-33 143.7 98 81.6
RcHm_v2.0_Chr3g0491831 Rosa chinensis HOM05D007755 ORTHO05D009866 4.4e-28 127.9 78 89.7
AL2G20820 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 3.7e-27 124.8 72 91.7
CARHR281980 Cardamine hirsuta HOM05D007755 ORTHO05D009866 4.8e-27 124.4 72 91.7
Gohir.1Z049880 Gossypium hirsutum HOM05D007755 ORTHO05D009866 5.3e-26 120.9 71 88.7
Nn3g19094 Nelumbo nucifera HOM05D007755 ORTHO05D009866 2.9e-24 115.2 63 100.0
Nn055s41929 Nelumbo nucifera HOM05D007755 ORTHO05D035211 8.5e-24 113.6 60 100.0
PGR111G0111 Punica granatum HOM05D007755 ORTHO05D009866 1.9e-23 112.5 63 96.8
LjContig00489g0017505 Lotus japonicus HOM05D007755 ORTHO05D009866 4.2e-23 111.3 63 93.7
Potri.013G142548 Populus trichocarpa HOM05D007755 ORTHO05D009866 4.2e-23 111.3 63 95.2
AL2G21330 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
ATCG00300 Arabidopsis thaliana HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
A06p23320 Brassica napus HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BNapus_Darmor_BZH_scaffold_287p00020 Brassica napus HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
C09p40450 Brassica napus HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BolC7t41728H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BolC9t56908H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BolSC29t60454H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BolSC45t60871H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BolSC47t61109H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BolSC47t61113H Brassica oleracea HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BraA06t25434Z Brassica rapa HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
BraSC140t45582Z Brassica rapa HOM05D007755 ORTHO05D009866 7.2e-23 110.5 63 95.2
Migut.J01358 Erythranthe guttata HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr00c0272g0573011 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr00c0300g0573261 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr00c0313g0573411 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr00c0920g0577881 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr02g0041661 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr02g0044811 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr04g0099331 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr07g0201081 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr08g0210241 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr10g0282461 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQChr11g0326681 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
HanXRQCPg0579881 Helianthus annuus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 93.7
LjContig00318g0015447 Lotus japonicus HOM05D007755 ORTHO05D009866 9.4e-23 110.2 63 95.2
Gohir.D06G164048 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.2e-22 109.8 63 93.7
Gohir.D08G128420 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.2e-22 109.8 63 93.7
CAN.G679.8 Capsicum annuum HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Lsat_1_v5_gn_8_5961 Lactuca sativa HOM05D007755 ORTHO05D009866 1.6e-22 109.4 80 76.2
Medtr8g056780 Medicago truncatula HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Sed0002727 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Sed0008331 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Sed0012017 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Sed0014140 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Sed0021343 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Sed0024615 Sechium edule HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
Solyc01g102770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 1.6e-22 109.4 63 93.7
DCAR_032481 Daucus carota HOM05D007755 ORTHO05D009866 2.1e-22 109.0 63 92.1
HanXRQChr05g0151401 Helianthus annuus HOM05D007755 ORTHO05D009866 2.7e-22 108.6 63 92.1
Prupe.2G104500 Prunus persica HOM05D007755 ORTHO05D009866 3.6e-22 108.2 63 93.7
Gohir.A05G086100 Gossypium hirsutum HOM05D007755 ORTHO05D009866 6.1e-22 107.5 63 92.1
PSO548G0042 Papaver somniferum HOM05D007755 ORTHO05D009866 8.0e-22 107.1 63 93.7
Migut.D01347 Erythranthe guttata HOM05D007755 ORTHO05D009866 1.4e-21 106.3 59 96.6
Glyma.01G095900 Glycine max HOM05D007755 ORTHO05D009866 1.4e-21 106.3 63 92.1
Gohir.A12G076900 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.4e-21 106.3 63 92.1
Gohir.A12G121501 Gossypium hirsutum HOM05D007755 ORTHO05D009866 1.8e-21 105.9 63 90.5
BraSC179t45795Z Brassica rapa HOM05D007755 ORTHO05D009866 3.0e-21 105.1 63 92.1
Eucgr.B02051 Eucalyptus grandis HOM05D007755 ORTHO05D009866 4.0e-21 104.8 68 82.4
Solyc11g050770.1 Solanum lycopersicum HOM05D007755 ORTHO05D009866 4.0e-21 104.8 62 88.7
HanXRQChr11g0330571 Helianthus annuus HOM05D007755 ORTHO05D009866 6.7e-21 104.0 63 90.5
Gohir.A01G164800 Gossypium hirsutum HOM05D007755 ORTHO05D009866 4.4e-20 101.3 63 87.3
CAN.G201.1 Capsicum annuum HOM05D007755 ORTHO05D009866 7.4e-20 100.5 63 87.3
Phvul.010G069000 Phaseolus vulgaris HOM05D007755 ORTHO05D009866 1.3e-19 99.8 63 82.5
Solyc10g017950.2 Solanum lycopersicum HOM05D007755 ORTHO05D009866 2.2e-19 99.0 62 87.1
BolSC44t60853H Brassica oleracea HOM05D007755 ORTHO05D009866 3.7e-19 98.2 59 88.1
BolSC49t61194H Brassica oleracea HOM05D007755 ORTHO05D009866 3.7e-19 98.2 59 88.1
Migut.M00584 Erythranthe guttata HOM05D007755 ORTHO05D009866 3.7e-19 98.2 56 91.1
Gorai.003G070800 Gossypium raimondii HOM05D007755 ORTHO05D009866 4.8e-19 97.8 63 82.5
Glyma.08G363500 Glycine max HOM05D007755 ORTHO05D009866 1.1e-18 96.7 63 82.5
Os12g0504050 Oryza sativa ssp. japonica HOM05D007755 ORTHO05D009866 1.4e-18 96.3 67 79.1
Thhalv10011069m.g Eutrema salsugineum HOM05D007755 ORTHO05D009866 3.1e-18 95.1 54 90.7
Hma1.2p1_0149F.1_g066480 Hydrangea macrophylla HOM05D007755 ORTHO05D009866 9.1e-18 93.6 63 82.5
EL10As15g24140 Beta vulgaris HOM05D000890 ORTHO05D009866 2.6e-17 92.0 59 86.4
Nn1g08744 Nelumbo nucifera HOM05D007755 ORTHO05D035211 2.6e-17 92.0 47 95.7
Nn2g13213 Nelumbo nucifera HOM05D007755 ORTHO05D009866 5.0e-16 87.8 45 100.0
BraSC143t45685Z Brassica rapa HOM05D007755 ORTHO05D009866 1.0e-13 80.1 47 89.4
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 1.5e-12 76.3 43 93.0
AL2G25590 Arabidopsis lyrata HOM05D007755 ORTHO05D009866 4.4e-12 74.7 61 68.9
CSS0044859 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 1.1e-10 70.1 45 80.0
SMO086G0034 Selaginella moellendorffii HOM05D007755 ORTHO05D009866 2.4e-10 68.9 61 67.2
CSS0030059 Camellia sinensis var. sinensis HOM05D007755 ORTHO05D009866 4.1e-10 68.2 75 58.7
MD00G1208700 Malus domestica HOM05D007755 ORTHO05D009866 2.5e-07 58.9 49 69.4
Eucgr.F03556 Eucalyptus grandis HOM05D007755 ORTHO05D035211 1.6e-06 56.2 39 84.6


User provided reference genes

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