Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.8e-163 578.6 296 100.0
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.2e-158 563.1 300 97.0
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 5.0e-120 434.9 302 72.5
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.7e-115 419.9 304 70.4
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.6e-113 411.8 307 70.0
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 1.3e-112 410.2 303 70.0
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 3.9e-112 408.7 252 79.8
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.5e-111 406.8 314 68.5
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.2e-108 397.1 304 68.4
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.0e-108 396.4 282 72.3
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.6e-108 396.0 304 67.1
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.8e-108 394.8 303 68.6
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 1.3e-107 393.7 314 67.8
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.7e-107 393.3 291 70.1
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 2.9e-107 392.5 302 66.9
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 4.9e-107 391.7 269 72.1
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 4.9e-107 391.7 291 69.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 8.3e-107 391.0 263 74.5
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 8.3e-107 391.0 304 68.1
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 1.4e-106 390.2 262 75.2
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.4e-106 390.2 309 66.3
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.4e-106 390.2 274 71.2
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.9e-106 389.8 305 66.9
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 1.9e-106 389.8 257 75.9
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-106 389.4 304 67.1
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.4e-106 389.4 305 66.6
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.1e-106 388.7 280 72.1
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 5.4e-106 388.3 274 72.6
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 7.1e-106 387.9 304 67.1
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.2e-106 387.5 304 66.8
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 9.2e-106 387.5 308 66.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.2e-105 387.1 285 69.5
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.6e-105 386.7 313 67.1
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.1e-105 386.3 255 75.7
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 2.7e-105 386.0 310 66.1
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 3.5e-105 385.6 308 64.6
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 4.6e-105 385.2 303 66.0
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 6.0e-105 384.8 315 67.3
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 7.8e-105 384.4 281 70.1
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.0e-104 384.0 296 66.2
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.3e-104 383.6 296 66.6
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.3e-104 383.6 273 72.5
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 1.7e-104 383.3 273 72.2
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.7e-104 383.3 283 69.3
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 2.3e-104 382.9 247 77.3
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 5.1e-104 381.7 257 75.1
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.1e-104 381.7 305 65.6
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.6e-104 381.3 265 75.1
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 6.6e-104 381.3 300 64.7
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 8.6e-104 380.9 306 65.7
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 8.6e-104 380.9 303 65.3
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 1.1e-103 380.6 266 72.9
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.1e-103 380.6 246 77.2
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.5e-103 380.2 303 65.3
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.9e-103 379.8 302 65.9
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.9e-103 379.8 236 79.2
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.5e-103 379.4 266 71.8
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 3.3e-103 379.0 282 68.1
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 4.3e-103 378.6 311 64.3
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 4.3e-103 378.6 306 66.7
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 4.3e-103 378.6 249 77.1
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 9.5e-103 377.5 267 71.2
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.2e-102 377.1 280 69.3
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.6e-102 376.7 303 65.0
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.1e-102 376.3 305 65.2
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 2.8e-102 375.9 311 64.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.8e-102 375.9 240 75.0
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.8e-102 375.9 305 65.6
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 3.6e-102 375.6 281 69.4
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 4.7e-102 375.2 267 69.7
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.7e-102 375.2 304 62.8
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 8.1e-102 374.4 269 70.6
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 8.1e-102 374.4 301 64.8
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 1.4e-101 373.6 300 64.7
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.8e-101 373.2 263 70.3
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.8e-101 373.2 303 64.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.8e-101 373.2 307 63.8
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 2.3e-101 372.9 273 69.6
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 3.1e-101 372.5 312 64.7
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 3.1e-101 372.5 305 64.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 8.9e-101 370.9 259 73.0
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 8.9e-101 370.9 305 65.2
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 8.9e-101 370.9 269 69.1
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.2e-100 370.5 302 63.9
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 1.2e-100 370.5 307 63.5
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.6e-100 369.4 241 75.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.6e-100 369.4 272 70.6
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 2.6e-100 369.4 265 69.8
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 3.4e-100 369.0 283 66.8
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 3.4e-100 369.0 269 69.1
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 3.4e-100 369.0 269 69.1
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 3.4e-100 369.0 269 69.1
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 3.4e-100 369.0 292 66.4
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 3.4e-100 369.0 306 64.1
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.4e-100 369.0 305 63.6
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 4.4e-100 368.6 279 68.1
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 4.4e-100 368.6 269 69.1
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 4.4e-100 368.6 269 69.1
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 4.4e-100 368.6 307 64.5
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 5.8e-100 368.2 263 69.2
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 7.6e-100 367.9 309 64.4
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.6e-100 367.9 236 78.0
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 9.9e-100 367.5 280 67.9
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.7e-99 366.7 302 64.9
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.2e-99 366.3 269 68.8
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 2.9e-99 365.9 269 68.4
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 3.8e-99 365.5 308 63.6
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 3.8e-99 365.5 307 63.5
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 4.9e-99 365.2 314 62.4
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 6.4e-99 364.8 238 73.9
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 8.4e-99 364.4 294 66.0
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 1.1e-98 364.0 303 64.0
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.1e-98 364.0 229 77.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.9e-98 363.2 314 61.1
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 2.4e-98 362.8 269 69.9
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 2.4e-98 362.8 258 69.4
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.2e-98 362.5 243 72.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 4.1e-98 362.1 238 75.2
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.2e-97 360.5 269 69.5
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.6e-97 360.1 314 60.5
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.6e-97 360.1 269 66.9
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 3.5e-97 359.0 307 63.8
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 2.3e-96 356.3 284 64.4
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 8.6e-96 354.4 244 73.0
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 7.3e-95 351.3 277 64.6
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.2e-94 350.5 311 62.7
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.8e-94 349.4 251 69.7
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 8.1e-94 347.8 251 69.7
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 8.9e-93 344.4 288 60.4
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.5e-92 343.6 242 67.8
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 2.0e-92 343.2 254 71.3
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.0e-92 343.2 275 64.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 9.3e-90 334.3 271 60.9
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 2.1e-89 333.2 269 63.9
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 2.7e-89 332.8 277 65.0
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-86 323.6 275 61.8
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.8e-86 322.8 277 63.5
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.2e-84 317.4 280 56.8
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 8.4e-83 311.2 247 64.8
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.0e-77 292.4 183 80.3
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.1e-74 284.3 239 58.2
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.0e-72 277.7 238 57.6
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 5.1e-72 275.4 266 51.9
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 1.7e-67 260.4 253 55.3
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 7.1e-66 255.0 150 84.7
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 6.9e-61 238.4 240 48.3
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-60 237.7 228 61.0
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.5e-60 237.3 220 62.3
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 2.9e-59 233.0 246 52.4
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.8e-59 232.6 272 45.2
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 2.8e-54 216.5 134 83.6
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 2.4e-53 213.4 176 59.1
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.7e-46 189.5 202 56.4
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-43 181.0 182 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.1e-42 177.9 185 51.4
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 7.2e-42 175.3 111 75.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 5.9e-36 155.6 259 40.9
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.2e-35 153.7 137 62.8
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 7.7e-28 128.6 75 82.7
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 2.9e-27 126.7 206 41.7
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.2e-25 121.3 89 70.8
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 4.7e-25 119.4 67 88.1
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 5.2e-24 115.9 226 32.7
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 5.4e-21 105.9 66 83.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.0e-17 92.0 83 55.4
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.2e-15 88.2 102 49.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.8e-13 80.9 181 29.8
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 5.4e-13 79.3 54 70.4
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.1e-09 67.4 125 35.2
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 1.0e-08 65.1 59 47.5
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.0e-08 63.2 81 42.0
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-07 61.6 41 70.7
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.9e-06 56.2 39 79.5


User provided reference genes

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