Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 1.7e-101 372.9 209 100.0
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.1e-100 367.1 206 100.0
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 1.5e-73 280.0 195 71.8
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 1.2e-72 276.9 199 66.3
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.4e-68 262.7 199 64.8
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 2.4e-68 262.7 199 64.8
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.3e-66 256.9 199 62.3
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 3.9e-66 255.4 199 62.3
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 5.0e-66 255.0 196 62.2
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 2.5e-65 252.7 199 61.3
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 3.3e-65 252.3 199 61.8
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 1.6e-64 250.0 199 61.3
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.8e-64 249.2 199 61.3
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.1e-63 247.3 201 59.7
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 5.2e-63 245.0 213 57.7
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 6.8e-63 244.6 209 59.3
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 7.5e-62 241.1 202 56.9
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 7.5e-62 241.1 212 55.7
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 9.8e-62 240.7 212 56.6
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 9.8e-62 240.7 196 59.2
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 1.3e-61 240.4 205 58.5
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 8.3e-61 237.7 208 59.6
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.1e-60 237.3 200 61.0
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 1.9e-60 236.5 196 60.7
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 1.9e-60 236.5 201 57.2
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 2.4e-60 236.1 205 56.6
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 5.4e-60 235.0 216 56.9
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 5.4e-60 235.0 196 59.7
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 7.0e-60 234.6 199 61.3
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 9.2e-60 234.2 200 61.0
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 9.2e-60 234.2 199 61.3
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 4.6e-59 231.9 209 55.5
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 4.6e-59 231.9 209 54.1
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 1.3e-58 230.3 213 56.8
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 2.3e-58 229.6 172 65.1
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 3.0e-58 229.2 205 59.5
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 5.1e-58 228.4 209 55.0
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 1.1e-57 227.3 211 53.6
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 1.5e-57 226.9 209 54.1
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 1.9e-57 226.5 205 56.6
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 4.3e-57 225.3 197 57.9
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 9.5e-57 224.2 211 56.9
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 9.5e-57 224.2 205 55.6
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 9.5e-57 224.2 199 54.3
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.2e-56 223.8 194 55.7
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.6e-56 223.4 209 56.9
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 2.8e-56 222.6 200 55.0
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 2.8e-56 222.6 200 55.0
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 2.8e-56 222.6 199 55.3
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 2.8e-56 222.6 209 57.4
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 6.2e-56 221.5 196 56.6
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 3.1e-55 219.2 197 56.3
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.2e-55 218.4 214 54.7
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 6.8e-55 218.0 214 54.7
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 6.8e-55 218.0 214 54.7
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 8.9e-55 217.6 214 54.2
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 1.2e-54 217.2 200 53.5
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 1.2e-54 217.2 202 55.4
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 1.2e-54 217.2 202 55.4
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 1.5e-54 216.9 199 54.8
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 2.6e-54 216.1 197 54.8
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.4e-54 215.3 214 53.7
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.2e-53 213.0 199 54.8
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 6.4e-53 211.5 199 56.3
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 3.2e-52 209.1 199 55.8
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 4.1e-52 208.8 195 55.9
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 9.2e-52 207.6 184 54.3
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.6e-51 206.8 200 52.5
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 2.7e-51 206.1 199 53.3
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 4.6e-51 205.3 203 53.2
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 1.0e-50 204.1 203 52.2
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 3.0e-50 202.6 212 49.5
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 6.6e-50 201.4 200 51.5
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 8.6e-50 201.1 203 50.2
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 8.6e-50 201.1 212 49.1
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.9e-49 199.9 203 50.2
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 1.9e-49 199.9 203 49.8
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 2.5e-49 199.5 200 51.0
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 3.3e-49 199.1 200 51.0
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 3.3e-49 199.1 200 50.5
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.1e-48 196.4 199 50.8
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 2.1e-48 196.4 199 50.3
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 2.8e-48 196.1 200 50.0
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.8e-48 196.1 199 50.3
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 3.6e-48 195.7 200 50.0
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 4.7e-48 195.3 200 49.5
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 8.1e-48 194.5 200 49.0
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 1.1e-47 194.1 200 49.0
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 1.1e-47 194.1 200 49.0
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 1.1e-47 194.1 200 49.0
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 1.8e-47 193.4 200 49.0
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.8e-47 193.4 199 49.7
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 2.4e-47 193.0 199 50.3
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 1.5e-46 190.3 213 46.0
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 5.8e-46 188.3 197 50.8
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 2.1e-43 179.9 198 50.0
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 6.6e-42 174.9 144 60.4
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 6.6e-42 174.9 171 52.0
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 8.7e-42 174.5 171 52.0
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 6.2e-40 168.3 145 57.2
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 9.0e-31 137.9 180 44.4
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 5.8e-30 135.2 197 41.6
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 3.8e-29 132.5 129 52.7
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 2.4e-28 129.8 134 50.7
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 5.4e-28 128.6 133 49.6
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 2.7e-27 126.3 142 47.9
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 1.5e-22 110.5 228 31.1
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 1.5e-22 110.5 117 53.8
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 1.5e-22 110.5 117 53.8
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 1.5e-22 110.5 117 53.8
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 1.5e-22 110.5 117 53.8
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 1.5e-22 110.5 117 53.8
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 1.9e-20 103.6 100 51.0
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 9.3e-20 101.3 95 50.5
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 1.0e-18 97.8 96 50.0
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 2.8e-16 89.7 71 57.7
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 3.7e-16 89.4 100 46.0
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 1.7e-13 80.5 93 43.0
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 9.3e-12 74.7 102 42.2
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-09 66.2 136 33.8


User provided reference genes

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