Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn044s41806 Nelumbo nucifera HOM05D003430 ORTHO05D004809 9.9e-39 162.9 79 100.0
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 1.2e-25 119.4 59 98.3
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 6.2e-25 117.1 59 96.6
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 6.2e-25 117.1 59 96.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 6.2e-25 117.1 59 96.6
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 3.1e-24 114.8 59 94.9
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 3.1e-24 114.8 59 94.9
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 4.0e-24 114.4 59 94.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.2e-23 112.8 59 93.2
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 1.5e-23 112.5 59 93.2
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 4.4e-23 110.9 59 93.2
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 7.6e-23 110.2 59 93.2
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 7.6e-23 110.2 59 93.2
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 7.6e-23 110.2 59 93.2
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 7.6e-23 110.2 59 93.2
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 7.6e-23 110.2 59 93.2
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 7.6e-23 110.2 59 93.2
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 9.9e-23 109.8 59 91.5
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 9.9e-23 109.8 59 91.5
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 9.9e-23 109.8 59 91.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 9.9e-23 109.8 59 91.5
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-22 109.4 59 91.5
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.3e-22 109.4 59 91.5
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 1.3e-22 109.4 59 91.5
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-22 109.0 59 89.8
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-22 109.0 59 89.8
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 1.7e-22 109.0 59 89.8
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 1.7e-22 109.0 59 91.5
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 1.7e-22 109.0 59 89.8
Sabra12G0092700 Salix brachista HOM05D003430 ORTHO05D004809 2.9e-22 108.2 59 89.8
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 2.9e-22 108.2 59 89.8
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-21 106.3 59 89.8
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 1.1e-21 106.3 59 89.8
Medtr8g091515 Medicago truncatula HOM05D003430 ORTHO05D004809 1.4e-21 105.9 59 89.8
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 4.2e-21 104.4 59 89.8
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.2e-21 104.4 59 89.8
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-21 104.4 59 88.1
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-21 104.4 59 88.1
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-21 104.4 59 88.1
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 4.2e-21 104.4 59 88.1
AT2G07815 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
BraSC54t46375Z Brassica rapa HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
BraSC77t46627Z Brassica rapa HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 5.4e-21 104.0 59 88.1
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 7.1e-21 103.6 59 88.1
Nitab4.5_0001152g0410 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.1e-21 103.6 59 88.1
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 2.7e-20 101.7 59 84.7
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 7.8e-20 100.1 59 86.4
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 7.8e-20 100.1 59 84.7
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 1.3e-19 99.4 59 86.4
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 1.7e-19 99.0 59 81.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.0e-19 98.2 59 84.7
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 3.0e-19 98.2 59 84.7
Aqoxy4G00518 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 6.6e-19 97.1 56 83.9
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 8.7e-19 96.7 46 100.0
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.5e-18 95.9 59 83.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.5e-18 95.1 59 83.1
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.3e-18 94.7 46 97.8
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 3.3e-18 94.7 46 97.8
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 1.6e-17 92.4 46 95.7
Gohir.D01G117000 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.8e-17 91.7 59 78.0
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.4e-16 88.6 46 93.5
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 5.3e-16 87.4 46 91.3
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.2e-15 86.3 46 91.3
GSVIVG01031933001 Vitis vinifera HOM05D003430 ORTHO05D004809 4.5e-15 84.3 59 69.5
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.7e-14 82.4 46 87.0
BolC1t03462H Brassica oleracea HOM05D003430 ORTHO05D004809 4.9e-14 80.9 46 84.8
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 4.9e-14 80.9 46 87.0
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 4.2e-13 77.8 46 84.8
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 4.2e-13 77.8 46 84.8
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 4.2e-13 77.8 42 85.7
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.4e-13 77.4 46 80.4
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 9.3e-13 76.6 48 81.2
TPR.G457 Trifolium pratense HOM05D003430 ORTHO05D004809 2.1e-12 75.5 43 86.0
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 6.0e-12 73.9 39 89.7
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 2.3e-11 72.0 38 86.8
Medtr5g068830 Medicago truncatula HOM05D003430 ORTHO05D004809 2.3e-11 72.0 55 70.9
Solyc00g500167.1 Solanum lycopersicum HOM05D001426 ORTHO05D001389 2.3e-11 72.0 36 94.4
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 2.3e-11 72.0 38 89.5
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 3.9e-11 71.2 38 86.8
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.9e-11 71.2 38 86.8
Ciclev10017542m.g Citrus clementina HOM05D003430 ORTHO05D004809 1.1e-10 69.7 36 91.7
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.4e-08 62.0 64 59.4
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 1.5e-07 59.3 42 64.3
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 4.5e-07 57.8 56 60.7
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 1.3e-06 56.2 29 89.7
SHI33655 Sapria himalayana HOM05D003430 ORTHO05D004809 4.9e-06 54.3 59 52.5


User provided reference genes

Program Settings