Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn029s41592 Nelumbo nucifera HOM05D000445 ORTHO05D000314 6.1e-48 193.7 92 100.0
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 8.0e-32 140.2 77 87.0
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 3.0e-31 138.3 77 85.7
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 3.0e-31 138.3 77 85.7
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 8.8e-31 136.7 78 85.9
Nn3g16494 Nelumbo nucifera HOM05D000445 ORTHO05D000314 8.8e-31 136.7 77 84.4
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 2.6e-30 135.2 77 85.7
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 1.3e-29 132.9 94 71.3
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.3e-29 132.9 94 71.3
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 2.8e-29 131.7 79 82.3
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.7e-29 131.3 78 83.3
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 4.8e-29 131.0 79 82.3
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 4.8e-29 131.0 94 70.2
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 6.3e-29 130.6 79 82.3
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 1.1e-28 129.8 79 82.3
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.4e-28 129.4 79 81.0
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 5.3e-28 127.5 76 82.9
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 1.6e-27 125.9 79 79.7
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 2.0e-27 125.6 78 80.8
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.0e-27 125.6 93 68.8
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 2.0e-27 125.6 79 77.2
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 2.0e-27 125.6 79 77.2
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 2.0e-27 125.6 79 79.7
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 2.0e-27 125.6 79 79.7
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 2.0e-27 125.6 79 79.7
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 3.5e-27 124.8 94 68.1
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 3.5e-27 124.8 94 68.1
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 3.5e-27 124.8 79 78.5
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.5e-27 124.8 81 77.8
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.5e-27 124.8 81 77.8
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 4.5e-27 124.4 79 78.5
Solyc09g031820.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.5e-27 124.4 79 77.2
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 5.9e-27 124.0 79 78.5
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 5.9e-27 124.0 79 77.2
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 5.9e-27 124.0 79 77.2
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 5.9e-27 124.0 79 77.2
Nitab4.5_0007104g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.7e-27 123.6 78 78.2
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 7.7e-27 123.6 79 75.9
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-26 122.1 79 77.2
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BolSC49t61211H Brassica oleracea HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund01216 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund11510 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund19325 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund26851 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund26897 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund27472 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund29661 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
Hund29851 Selenicereus undatus HOM05D000445 ORTHO05D000314 5.0e-26 120.9 79 77.2
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.1e-25 119.8 76 78.9
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.1e-25 119.8 76 78.9
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.5e-25 119.4 79 75.9
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.5e-25 119.4 79 75.9
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.5e-25 119.4 79 75.9
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.9e-25 119.0 79 75.9
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 3.2e-25 118.2 78 75.6
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 3.2e-25 118.2 80 78.8
BcaB02g11358 Brassica carinata HOM05D000445 ORTHO05D000314 4.2e-25 117.9 79 74.7
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 5.5e-25 117.5 79 74.7
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 3.6e-24 114.8 77 74.0
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 6.1e-24 114.0 79 73.4
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 6.1e-24 114.0 79 73.4
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.0e-23 113.2 78 74.4
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.8e-23 112.5 76 75.0
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 2.3e-23 112.1 79 70.9
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 4.0e-23 111.3 78 73.1
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 4.0e-23 111.3 78 73.1
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 8.8e-23 110.2 91 64.8
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-22 109.8 79 72.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-22 109.8 79 72.2
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 1.2e-22 109.8 79 72.2
Hund11176 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.2e-22 109.8 74 75.7
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-22 109.8 92 60.9
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 5.7e-22 107.5 79 70.9
BolSC47t61072H Brassica oleracea HOM05D000445 ORTHO05D000314 1.4e-20 102.8 70 75.7
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 1.4e-20 102.8 70 75.7
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 5.4e-20 100.9 76 68.4
Solyc03g120370.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-19 99.4 93 63.4
HanXRQChr11g0333821 Helianthus annuus HOM05D000445 ORTHO05D000314 2.7e-19 98.6 80 66.2
HanXRQChr00c0788g0577401 Helianthus annuus HOM05D000445 ORTHO05D000314 2.2e-18 95.5 79 65.8
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 4.2e-17 91.3 48 89.6
Migut.O00730 Erythranthe guttata HOM05D000445 ORTHO05D000314 5.5e-17 90.9 61 77.0
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 1.2e-16 89.7 76 59.2
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.6e-16 89.4 61 73.8
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.6e-16 89.4 61 73.8
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.6e-16 89.4 61 73.8
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.6e-16 89.4 61 73.8
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.6e-16 89.4 61 73.8
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 1.6e-16 89.4 66 71.2
Migut.K01186 Erythranthe guttata HOM05D000445 ORTHO05D000314 5.2e-15 84.3 66 68.2
Actinidia34809 Actinidia chinensis HOM05D000445 ORTHO05D000314 2.6e-14 82.0 73 65.8
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-14 80.9 62 69.4
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 5.7e-14 80.9 62 69.4
Solyc02g011940.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.7e-14 80.9 67 64.2
Solyc04g050850.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-13 79.3 69 59.4
Nitab4.5_0023562g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.2e-13 79.0 52 75.0
HanXRQChr00c0126g0571771 Helianthus annuus HOM05D000445 ORTHO05D000314 9.2e-12 73.6 52 71.2
Oeu061855.1 Olea europaea HOM05D000445 ORTHO05D000314 4.5e-11 71.2 51 74.5
Oeu012799.1 Olea europaea HOM05D000445 ORTHO05D000314 5.9e-11 70.9 52 71.2
Nitab4.5_0001761g0240 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.0e-10 70.1 62 58.1
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.9e-10 68.6 33 97.0
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 5.0e-10 67.8 44 75.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 5.0e-10 67.8 44 75.0
EL10Ac9g20995 Beta vulgaris HOM05D000445 ORTHO05D000314 8.6e-10 67.0 45 77.8
Nitab4.5_0000011g0360 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-09 66.6 47 70.2
Oeu015121.1 Olea europaea HOM05D000445 ORTHO05D000314 1.5e-09 66.2 62 61.3
Nn020s41481 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.9e-09 65.9 31 96.8
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.5e-09 65.5 31 96.8
Solyc06g051370.1 Solanum lycopersicum HOM05D000445 ORTHO05D017746 7.3e-09 63.9 52 57.7
BolSC29t60617H Brassica oleracea HOM05D000445 ORTHO05D000314 1.2e-08 63.2 34 88.2
Carub.0026s0005 Capsella rubella HOM05D000445 ORTHO05D000314 1.2e-08 63.2 34 88.2
Solyc00g500149.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.6e-08 62.8 51 58.8
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.6e-08 61.6 48 66.7
arahy.Tifrunner.gnm1.ann1.A0N0CH Arachis hypogaea HOM05D000445 ORTHO05D000314 4.7e-08 61.2 66 54.5
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 6.8e-07 57.4 27 92.6
Hund25565 Selenicereus undatus HOM05D000445 ORTHO05D000314 6.8e-07 57.4 34 79.4
RcHm_v2.0_Chr2g0118451 Rosa chinensis HOM05D000445 ORTHO05D000314 2.0e-06 55.8 29 89.7
Medtr2g019700 Medicago truncatula HOM05D000445 ORTHO05D000314 3.4e-06 55.1 38 63.2


User provided reference genes

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