Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn025s41559 Nelumbo nucifera HOM05D009387 ORTHO05D011225 6.2e-52 207.2 108 100.0
Nn2g14724 Nelumbo nucifera HOM05D009387 ORTHO05D011225 6.2e-52 207.2 108 100.0
Nn1g08283 Nelumbo nucifera HOM05D001236 ORTHO05D001090 3.2e-16 88.6 52 88.5
Nn1g04219 Nelumbo nucifera HOM05D001236 ORTHO05D011225 5.5e-16 87.8 51 90.2
Nn5g27461 Nelumbo nucifera HOM05D009387 ORTHO05D011225 7.2e-16 87.4 52 86.5
Nn5g27463 Nelumbo nucifera HOM05D009387 ORTHO05D011225 7.2e-16 87.4 52 86.5
Nn5g27471 Nelumbo nucifera HOM05D000115 ORTHO05D011225 7.2e-16 87.4 52 86.5
Nn228s45480 Nelumbo nucifera HOM05D009387 ORTHO05D011225 3.0e-14 82.0 50 84.0
Nn1g07967 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g07981 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08001 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08009 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08013 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08014 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08020 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08021 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn1g08024 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.7e-13 77.0 38 100.0
Nn172s44495 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.9e-10 67.8 45 77.8
Nn3g20205 Nelumbo nucifera HOM05D009387 ORTHO05D011225 5.9e-10 67.8 45 77.8
PSO675G1730 Papaver somniferum HOM05D001236 ORTHO05D001090 5.9e-10 67.8 52 67.3
Nn3g20210 Nelumbo nucifera HOM05D009387 ORTHO05D011225 7.7e-10 67.4 40 85.0
PSO017G1161 Papaver somniferum HOM05D001236 ORTHO05D001090 7.7e-10 67.4 52 67.3
TAR365G0756 Trochodendron aralioides HOM05D001236 ORTHO05D001090 7.7e-10 67.4 52 67.3
MBI07_g35532_MAGBIO Magnolia biondii HOM05D001236 ORTHO05D001090 1.0e-09 67.0 50 72.0
Potri.002G251600 Populus trichocarpa HOM05D001236 ORTHO05D001090 1.0e-09 67.0 50 64.0
HanXRQChr16g0526941 Helianthus annuus HOM05D001236 ORTHO05D001090 3.8e-09 65.1 50 68.0
Sabra02G0191200 Salix brachista HOM05D001236 ORTHO05D001090 3.8e-09 65.1 50 60.0
Sed0000162 Sechium edule HOM05D001236 ORTHO05D001090 3.8e-09 65.1 50 62.0
Manes.12G054300 Manihot esculenta HOM05D001236 ORTHO05D001090 6.5e-09 64.3 50 64.0
Nn109s43304 Nelumbo nucifera HOM05D009387 ORTHO05D011225 6.5e-09 64.3 38 84.2
Nn5g27465 Nelumbo nucifera HOM05D009387 ORTHO05D011225 6.5e-09 64.3 38 84.2
Manes.13G054500 Manihot esculenta HOM05D001236 ORTHO05D001090 8.5e-09 63.9 48 66.7
Nn1g04326 Nelumbo nucifera HOM05D009387 ORTHO05D011225 8.5e-09 63.9 38 86.8
Cpa.g.sc8.71 Carica papaya HOM05D001236 ORTHO05D001090 1.1e-08 63.5 50 62.0
TWI36G0180 Tripterygium wilfordii HOM05D001236 ORTHO05D001090 1.1e-08 63.5 52 61.5
Lsat_1_v5_gn_8_98080 Lactuca sativa HOM05D001236 ORTHO05D001090 1.5e-08 63.2 50 66.0
Glyma.16G083100 Glycine max HOM05D001236 ORTHO05D001090 1.9e-08 62.8 50 62.0
VMungo0331G1776 Vigna mungo HOM05D001236 ORTHO05D001090 1.9e-08 62.8 50 62.0
Glyma.03G090000 Glycine max HOM05D001236 ORTHO05D001090 4.2e-08 61.6 50 60.0
QL09p046418 Quercus lobata HOM05D001236 ORTHO05D001090 4.2e-08 61.6 48 64.6
TWI75G1139 Tripterygium wilfordii HOM05D001236 ORTHO05D001090 4.2e-08 61.6 50 60.0
CANSAT01G1496 Cannabis sativa HOM05D001236 ORTHO05D001090 5.5e-08 61.2 50 64.0
ECA236G0241 Erigeron canadensis HOM05D001236 ORTHO05D001090 5.5e-08 61.2 50 62.0
Eucgr.K02088 Eucalyptus grandis HOM05D001236 ORTHO05D001090 7.2e-08 60.8 48 62.5
Nn035s41622 Nelumbo nucifera HOM05D009387 ORTHO05D011225 7.2e-08 60.8 36 83.3
Nn228s45479 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.4e-08 60.5 38 78.9
Nn5g27470 Nelumbo nucifera HOM05D009387 ORTHO05D011225 9.4e-08 60.5 38 78.9
ATR0686G225 Amborella trichopoda HOM05D001236 ORTHO05D001090 1.2e-07 60.1 52 63.5
CsaV3_7G026850 Cucumis sativus L. HOM05D001236 ORTHO05D001090 1.2e-07 60.1 50 60.0
Nn5g27462 Nelumbo nucifera HOM05D009387 ORTHO05D011225 1.2e-07 60.1 35 85.7
Actinidia23359 Actinidia chinensis HOM05D001236 ORTHO05D001090 1.6e-07 59.7 47 61.7
Haze_03499 Corylus avellana HOM05D001236 ORTHO05D001090 1.6e-07 59.7 48 60.4
Phvul.010G031500 Phaseolus vulgaris HOM05D001236 ORTHO05D001090 1.6e-07 59.7 50 60.0
Hund09469 Selenicereus undatus HOM05D001236 ORTHO05D001090 1.6e-07 59.7 50 64.0
MELO3C012727.2 Cucumis melo HOM05D001236 ORTHO05D001090 2.1e-07 59.3 48 60.4
Nn132s43803 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Nn2g14708 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Nn2g14711 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Nn2g14715 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Nn2g14720 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Nn2g14721 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Nn2g16005 Nelumbo nucifera HOM05D009387 ORTHO05D011225 2.1e-07 59.3 40 80.0
Psat4g206600 Pisum sativum HOM05D001236 ORTHO05D001090 2.7e-07 58.9 50 56.0
arahy.Tifrunner.gnm1.ann1.U2XTER Arachis hypogaea HOM05D001236 ORTHO05D001090 3.6e-07 58.5 50 62.0
arahy.Tifrunner.gnm1.ann1.ZPNK8K Arachis hypogaea HOM05D001236 ORTHO05D001090 3.6e-07 58.5 50 62.0
Dinv10441 Davidia involucrata HOM05D001236 ORTHO05D001090 3.6e-07 58.5 50 58.0
Actinidia34542 Actinidia chinensis HOM05D001236 ORTHO05D001090 4.7e-07 58.2 50 58.0
Lj1A101G43 Lonicera japonica HOM05D001236 ORTHO05D001090 4.7e-07 58.2 52 55.8
Rhsim13G0052800 Rhododendron simsii HOM05D001236 ORTHO05D001090 4.7e-07 58.2 50 56.0
CSS0002372 Camellia sinensis var. sinensis HOM05D001236 ORTHO05D001090 6.1e-07 57.8 50 58.0
CSS0024789 Camellia sinensis var. sinensis HOM05D001236 ORTHO05D001090 6.1e-07 57.8 50 58.0
Phvul.008G136800 Phaseolus vulgaris HOM05D001236 ORTHO05D001090 6.1e-07 57.8 48 62.5
Thecc.01G210900 Theobroma cacao HOM05D001236 ORTHO05D001090 8.0e-07 57.4 47 59.6
Actinidia23796 Actinidia chinensis HOM05D001236 ORTHO05D001090 1.0e-06 57.0 50 56.0
Ciclev10014518m.g Citrus clementina HOM05D001236 ORTHO05D001090 1.0e-06 57.0 50 54.0
Duzib138G1660 Durio zibethinus HOM05D001236 ORTHO05D001090 1.0e-06 57.0 47 59.6
Glyma.08G344100 Glycine max HOM05D001236 ORTHO05D001090 1.0e-06 57.0 48 60.4
Gohir.D11G148900 Gossypium hirsutum HOM05D001236 ORTHO05D001090 1.0e-06 57.0 47 59.6
Gorai.007G159700 Gossypium raimondii HOM05D001236 ORTHO05D001090 1.0e-06 57.0 47 59.6
Lj2A1117G16 Lonicera japonica HOM05D001236 ORTHO05D001090 1.0e-06 57.0 50 58.0
PGR044G1189 Punica granatum HOM05D001236 ORTHO05D001090 1.0e-06 57.0 46 60.9
Sed0007167 Sechium edule HOM05D001236 ORTHO05D001090 1.4e-06 56.6 48 60.4
Sc05g0001750 Simmondsia chinensis HOM05D001236 ORTHO05D001090 1.4e-06 56.6 46 63.0
TPR.G28989 Trifolium pratense HOM05D001236 ORTHO05D001090 1.4e-06 56.6 48 58.3
VMungo1383G2458 Vigna mungo HOM05D001236 ORTHO05D001090 1.4e-06 56.6 48 60.4
Ah.02g111150 Amaranthus hybridus HOM05D001236 ORTHO05D001090 1.8e-06 56.2 50 60.0
ClCG09G008200 Citrullus lanatus HOM05D001236 ORTHO05D001090 1.8e-06 56.2 48 58.3
Gohir.A11G142600 Gossypium hirsutum HOM05D001236 ORTHO05D001090 1.8e-06 56.2 47 59.6
Lj3g0008493 Lotus japonicus HOM05D001236 ORTHO05D001090 1.8e-06 56.2 48 58.3
vmacro02817 Vaccinium macrocarpon HOM05D001236 ORTHO05D001090 1.8e-06 56.2 50 58.0
Atru.chr6.3544 Acer truncatum HOM05D001236 ORTHO05D001090 2.3e-06 55.8 48 54.2
Ca_23186_v3 Cicer arietinum L. HOM05D001236 ORTHO05D001090 3.0e-06 55.5 48 58.3
Ca_30804_v3 Cicer arietinum L. HOM05D001236 ORTHO05D001090 3.0e-06 55.5 48 58.3
Medtr8g011460 Medicago truncatula HOM05D001236 ORTHO05D001090 4.0e-06 55.1 48 56.2
Hund02796 Selenicereus undatus HOM05D001236 ORTHO05D001090 4.0e-06 55.1 50 60.0
CDE05G0796 Ceratophyllum demersum HOM05D001236 ORTHO05D001090 5.2e-06 54.7 52 57.7
AUR62008120 Chenopodium quinoa HOM05D001236 ORTHO05D001090 5.2e-06 54.7 50 58.0
TPR.G26821 Trifolium pratense HOM05D001236 ORTHO05D001090 5.2e-06 54.7 48 58.3
CiPaw.14G043700 Carya illinoinensis HOM05D001236 ORTHO05D001090 6.7e-06 54.3 49 59.2
Lalb_Chr19g0126131 Lupinus albus HOM05D001236 ORTHO05D001090 6.7e-06 54.3 48 56.2
AUR62028698 Chenopodium quinoa HOM05D001236 ORTHO05D001090 8.8e-06 53.9 50 58.0
FvH4_2g17780 Fragaria vesca HOM05D001236 ORTHO05D001090 8.8e-06 53.9 51 52.9
FAN24G3363 Fragaria x ananassa HOM05D001236 ORTHO05D001090 8.8e-06 53.9 51 52.9
PGSC0003DMG400013942 Solanum tuberosum HOM05D001236 ORTHO05D001090 8.8e-06 53.9 46 60.9
THA.LOC104802644 Tarenaya hassleriana HOM05D001236 ORTHO05D001090 8.8e-06 53.9 51 56.9


User provided reference genes

Program Settings