Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.5e-115 418.7 196 100.0
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 5.4e-94 347.8 169 92.9
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 5.4e-94 347.8 169 92.9
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 2.3e-92 342.4 159 96.9
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 6.5e-92 340.9 159 97.5
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 6.5e-92 340.9 159 96.9
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 8.6e-92 340.5 159 96.2
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.5e-91 339.7 159 96.2
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-91 339.7 159 96.2
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.5e-91 339.7 159 96.2
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 3.3e-91 338.6 159 94.3
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 4.2e-91 338.2 159 96.2
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 7.2e-91 337.4 159 96.2
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 9.5e-91 337.0 159 95.0
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 1.2e-90 336.7 159 94.3
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 1.2e-90 336.7 159 94.3
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.6e-90 336.3 159 96.2
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 2.1e-90 335.9 159 95.6
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 2.1e-90 335.9 161 93.2
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 2.8e-90 335.5 160 95.0
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 4.7e-90 334.7 158 95.6
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 180 86.1
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 180 86.1
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 180 86.1
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 180 86.1
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 6.1e-90 334.3 159 94.3
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.0e-90 334.0 159 95.0
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 8.0e-90 334.0 159 93.7
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-89 332.4 157 94.9
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-89 332.4 157 94.9
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 2.3e-89 332.4 157 94.9
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 3.0e-89 332.0 163 93.3
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 4.0e-89 331.6 159 94.3
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 5.2e-89 331.3 159 93.7
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 6.8e-89 330.9 159 93.7
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 8.9e-89 330.5 161 92.5
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 1.2e-88 330.1 162 92.6
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-88 329.7 167 89.2
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 1.5e-88 329.7 167 89.2
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-88 329.3 181 84.5
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 2.6e-88 328.9 159 92.5
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-88 327.8 159 91.8
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 1.7e-87 326.2 159 89.3
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 8.3e-87 323.9 159 93.1
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 8.3e-87 323.9 159 88.7
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 1.4e-86 323.2 180 83.3
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 9.2e-86 320.5 159 90.6
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 2.0e-85 319.3 157 93.0
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 3.5e-85 318.5 159 90.6
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 3.5e-85 318.5 159 90.6
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 3.5e-85 318.5 159 90.6
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 3.5e-85 318.5 159 90.6
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 3.5e-85 318.5 159 90.6
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 5.9e-85 317.8 168 88.1
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 1.0e-84 317.0 159 91.8
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 3.8e-84 315.1 159 89.3
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 3.8e-84 315.1 159 89.9
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 1.1e-83 313.5 159 89.3
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 1.5e-83 313.2 151 93.4
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 8.0e-82 307.4 154 90.3
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.0e-81 305.1 148 93.9
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.2e-80 303.5 142 97.2
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 4.4e-80 301.6 161 85.1
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 4.4e-80 301.6 197 73.6
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 4.4e-80 301.6 161 85.1
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 4.9e-79 298.1 144 92.4
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 1.1e-78 297.0 159 84.9
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 7.8e-77 290.8 139 93.5
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 6.6e-76 287.7 160 82.5
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.5e-75 285.8 159 84.9
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.8e-74 282.3 159 82.4
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 8.0e-74 280.8 139 90.6
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 4.4e-72 275.0 149 84.6
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 8.3e-71 270.8 167 76.0
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.4e-70 270.0 134 91.8
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 1.9e-70 269.6 161 78.9
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 1.7e-68 263.1 151 84.1
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 2.3e-68 262.7 134 88.8
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 1.1e-67 260.4 159 77.4
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 4.0e-65 251.9 163 73.6
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 2.0e-64 249.6 159 75.5
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 4.9e-63 245.0 117 95.7
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.4e-62 243.4 132 84.1
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.1e-59 233.8 139 76.3
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-59 233.8 135 79.3
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 1.6e-58 229.9 136 80.9
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.0e-57 225.3 127 81.9
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 3.4e-56 222.2 134 79.9
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 7.6e-56 221.1 158 69.6
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 7.6e-56 221.1 170 64.1
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 7.6e-56 221.1 170 64.1
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 7.6e-56 221.1 170 64.1
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 8.4e-55 217.6 109 90.8
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.4e-54 216.1 160 65.0
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.4e-54 216.1 160 65.0
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 2.4e-54 216.1 160 65.0
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.2e-53 213.8 124 81.5
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.1e-53 213.0 166 67.5
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 4.6e-53 211.8 105 90.5
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.0e-53 211.5 101 92.1
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 1.0e-52 210.7 107 86.9
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 1.0e-52 210.7 107 86.9
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 2.5e-51 206.1 112 85.7
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 2.5e-51 206.1 100 93.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 7.3e-51 204.5 95 97.9
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 3.6e-50 202.2 101 89.1
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.4e-49 200.3 134 74.6
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.6e-48 196.1 150 74.0
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 9.9e-48 194.1 134 70.9
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 1.7e-47 193.4 111 79.3
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-47 193.0 110 82.7
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 3.2e-46 189.1 115 73.9
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 9.3e-46 187.6 109 79.8
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.0e-44 184.1 92 92.4
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 4.3e-43 178.7 100 84.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 7.3e-43 177.9 90 85.6
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 4.8e-42 175.3 83 96.4
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 6.2e-42 174.9 89 89.9
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 1.4e-41 173.7 83 95.2
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 1.4e-41 173.7 84 92.9
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 2.4e-41 172.9 83 95.2
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 6.9e-41 171.4 83 94.0
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 2.6e-40 169.5 98 77.6
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.7e-39 166.8 83 90.4
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 1.4e-38 163.7 82 91.5
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 3.9e-36 155.6 92 77.2
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 8.7e-36 154.5 78 87.2
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 9.6e-35 151.0 101 72.3
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.6e-34 150.2 85 82.4
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 2.8e-34 149.4 72 95.8
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 4.8e-34 148.7 78 87.2
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.1e-33 147.5 84 81.0
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 1.2e-32 144.1 68 97.1
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 2.9e-31 139.4 141 54.6
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 4.2e-30 135.6 65 93.8
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 9.3e-30 134.4 67 89.6
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.5e-27 126.3 57 100.0
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 3.7e-26 122.5 58 94.8
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 1.8e-25 120.2 59 91.5
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.3e-23 114.0 55 89.1
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 6.5e-23 111.7 54 92.6
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.1e-22 110.9 69 73.9
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 1.6e-21 107.1 99 54.5
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 2.1e-21 106.7 53 90.6
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 1.0e-20 104.4 50 94.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 1.8e-20 103.6 53 83.0
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 1.1e-17 94.4 43 93.0
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.4e-17 94.0 86 50.0
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 1.7e-15 87.0 41 90.2
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 3.8e-15 85.9 48 85.4
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 9.4e-14 81.3 39 92.3
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 3.3e-11 72.8 53 66.0
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 1.4e-09 67.4 32 90.6
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 3.1e-09 66.2 68 48.5
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 4.5e-08 62.4 60 56.7
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.7e-07 60.5 88 31.8
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 5.0e-07 58.9 95 33.7
Hund10567 Selenicereus undatus HOM05D001033 ORTHO05D004888 5.0e-07 58.9 38 63.2
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 4.2e-06 55.8 115 29.6
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 5.5e-06 55.5 24 95.8
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 5.5e-06 55.5 106 34.0
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 5.5e-06 55.5 125 28.0
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 5.5e-06 55.5 125 28.0
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 7.2e-06 55.1 110 34.5
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 7.2e-06 55.1 110 34.5


User provided reference genes

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