Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 3.3e-47 191.4 102 100.0
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 3.3e-47 191.4 102 100.0
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 1.1e-45 186.4 102 97.1
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.6e-44 182.6 100 96.0
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 1.7e-43 179.1 102 95.1
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.5e-42 174.1 102 93.1
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 5.5e-42 174.1 102 93.1
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 7.2e-42 173.7 102 93.1
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 7.2e-42 173.7 102 93.1
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 7.2e-42 173.7 102 93.1
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 9.4e-42 173.3 102 93.1
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 1.2e-41 172.9 102 91.2
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 2.1e-41 172.2 102 92.2
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 4.7e-41 171.0 102 93.1
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 1.4e-40 169.5 102 91.2
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.8e-40 169.1 102 88.2
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 1.8e-40 169.1 102 91.2
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.3e-40 168.7 102 91.2
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 1.2e-39 166.4 102 88.2
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 1.5e-39 166.0 102 88.2
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.0e-39 165.6 102 89.2
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 2.0e-39 165.6 102 87.3
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 3.3e-39 164.9 102 87.3
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 3.3e-39 164.9 102 87.3
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 3.3e-39 164.9 102 87.3
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 3.3e-39 164.9 99 88.9
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 3.3e-39 164.9 93 93.5
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-39 164.5 102 87.3
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 1.7e-38 162.5 102 87.3
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 1.7e-38 162.5 102 87.3
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 2.2e-38 162.2 102 86.3
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 2.4e-37 158.7 102 86.3
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.4e-37 158.7 102 86.3
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 2.7e-36 155.2 101 81.2
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 7.7e-36 153.7 102 83.3
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 2.9e-35 151.8 101 82.2
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 2.9e-35 151.8 102 80.4
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.5e-35 150.6 102 82.4
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 8.5e-35 150.2 92 89.1
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 8.5e-35 150.2 92 89.1
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.5e-34 149.4 100 82.0
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 2.7e-33 145.2 90 86.7
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.1e-33 144.1 82 95.1
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 4.0e-32 141.4 86 90.7
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 6.3e-30 134.0 87 85.1
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 6.3e-30 134.0 87 85.1
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.8e-27 124.8 89 77.5
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.2e-26 120.6 89 75.3
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.8e-25 118.6 69 91.3
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.7e-25 117.9 70 92.9
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 6.1e-25 117.5 84 78.6
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.0e-24 116.7 117 61.5
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.8e-24 115.9 68 91.2
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 8.9e-24 113.6 106 63.2
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 8.9e-24 113.6 106 63.2
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.5e-23 112.8 83 77.1
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 2.0e-23 112.5 84 76.2
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-23 111.3 70 88.6
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 4.4e-23 111.3 70 88.6
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 4.4e-23 111.3 97 66.0
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 9.8e-23 110.2 70 87.1
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 9.8e-23 110.2 70 87.1
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 9.8e-23 110.2 70 87.1
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 1.3e-22 109.8 80 77.5
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 1.3e-22 109.8 80 77.5
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.2e-22 109.0 70 87.1
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 6.3e-22 107.5 62 90.3
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 2.4e-21 105.5 60 90.0
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 7.0e-21 104.0 70 85.7
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 1.2e-20 103.2 59 89.8
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 3.8e-19 98.2 54 96.3
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 5.6e-18 94.4 53 96.2
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 1.2e-17 93.2 56 87.5
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 2.1e-17 92.4 59 84.7
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 4.7e-17 91.3 55 85.5
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 4.7e-17 91.3 56 87.5
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 6.1e-17 90.9 81 70.4
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.1e-17 90.9 59 83.1
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 4.0e-16 88.2 64 79.7
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 3.7e-14 81.6 51 80.4
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 2.4e-13 79.0 45 86.7
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 1.2e-12 76.6 41 92.7
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 1.5e-10 69.7 40 92.5
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 9.5e-10 67.0 37 89.2
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 3.1e-08 62.0 73 49.3
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 6.8e-08 60.8 46 69.6


User provided reference genes

Program Settings