Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn021s41512 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.1e-40 167.9 79 100.0
Nn031s41600 Nelumbo nucifera HOM05D000445 ORTHO05D000314 3.1e-40 167.9 79 100.0
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.8e-36 153.3 72 98.6
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.8e-36 153.3 72 98.6
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 7.8e-36 153.3 72 98.6
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 2.3e-35 151.8 72 97.2
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 2.3e-35 151.8 72 97.2
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 8.6e-35 149.8 72 95.8
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.1e-34 149.4 72 95.8
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.1e-34 149.4 72 95.8
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.1e-34 149.4 72 95.8
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.9e-34 148.7 72 95.8
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.9e-34 148.7 72 95.8
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 2.5e-34 148.3 72 95.8
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 2.5e-34 148.3 72 95.8
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 2.5e-34 148.3 72 95.8
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.3e-34 147.5 71 95.8
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
Nitab4.5_0023562g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 5.6e-34 147.1 72 94.4
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 1.2e-33 146.0 72 94.4
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-33 145.6 72 93.1
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 2.1e-33 145.2 72 93.1
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.8e-33 144.8 72 93.1
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 4.7e-33 144.1 72 91.7
Nitab4.5_0014666g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.1e-32 142.9 72 91.7
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 1.1e-32 142.9 74 91.9
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 1.1e-32 142.9 74 91.9
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 2.4e-32 141.7 72 88.9
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr00c0533g0575561 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
Lsat_1_v5_gn_7_67161 Lactuca sativa HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 6.8e-32 140.2 72 91.7
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.2e-31 139.4 73 90.4
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.2e-31 139.4 73 90.4
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 1.2e-31 139.4 72 90.3
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.2e-31 139.4 72 90.3
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.2e-31 139.4 72 90.3
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.5e-31 139.0 72 90.3
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 1.5e-31 139.0 72 90.3
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 1.5e-31 139.0 72 90.3
Lsat_1_v5_gn_9_42020 Lactuca sativa HOM05D000445 ORTHO05D000314 2.6e-31 138.3 72 90.3
RcHm_v2.0_Chr2g0118441 Rosa chinensis HOM05D000445 ORTHO05D000314 3.4e-31 137.9 74 87.8
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 4.4e-31 137.5 72 90.3
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 4.4e-31 137.5 72 90.3
HanXRQChr11g0336101 Helianthus annuus HOM05D000445 ORTHO05D000314 5.8e-31 137.1 72 90.3
HanXRQChr11g0336121 Helianthus annuus HOM05D000445 ORTHO05D000314 5.8e-31 137.1 72 90.3
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.7e-30 135.6 72 90.3
Solyc04g024540.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.2e-30 135.2 72 87.5
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 3.8e-30 134.4 72 90.3
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 3.8e-30 134.4 72 87.5
Gorai.009G069400 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.9e-29 132.1 70 85.7
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 9.2e-29 129.8 64 92.2
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 9.2e-29 129.8 64 92.2
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 9.2e-29 129.8 64 92.2
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.7e-28 128.3 72 84.7
Lalb_Chr25g0281941 Lupinus albus HOM05D000445 ORTHO05D000314 4.6e-28 127.5 73 80.8
Gohir.A12G048150 Gossypium hirsutum HOM05D000445 ORTHO05D000314 6.0e-28 127.1 64 89.1
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 1.1e-26 122.9 72 84.7
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 1.1e-26 122.9 72 84.7
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 9.6e-26 119.8 59 91.5
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.1e-24 114.8 55 90.9
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 6.9e-24 113.6 58 89.7
Nn070s42380 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.2e-23 112.8 52 98.1
TAR629G3257 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.5e-23 112.5 53 98.1
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 2.0e-23 112.1 57 89.5
Nitab4.5_0004573g0040 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.4e-23 110.9 57 86.0
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.4e-23 110.9 76 72.4
Gorai.002G197300 Gossypium raimondii HOM05D000445 ORTHO05D000314 1.1e-21 106.3 53 92.5
Nitab4.5_0003415g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.4e-21 105.1 56 83.9
Gohir.D01G159050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.2e-21 104.4 53 90.6
Nitab4.5_0004376g0140 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.1e-20 102.1 72 72.2
MD15G1364300 Malus domestica HOM05D000445 ORTHO05D000314 2.7e-20 101.7 50 92.0
Nn5g30923 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.3e-19 99.4 50 92.0
BolSC29t60491H Brassica oleracea HOM05D000445 ORTHO05D000314 5.1e-19 97.4 50 88.0
BolSC37t60781H Brassica oleracea HOM05D000445 ORTHO05D000314 5.1e-19 97.4 50 88.0
BolSC49t61128H Brassica oleracea HOM05D000445 ORTHO05D000314 5.1e-19 97.4 50 88.0
BraSC179t45786Z Brassica rapa HOM05D000445 ORTHO05D000314 5.1e-19 97.4 50 88.0
BraSC25t45893Z Brassica rapa HOM05D000445 ORTHO05D000314 5.1e-19 97.4 50 88.0
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 8.7e-19 96.7 57 78.9
HanXRQChr00c0585g0576241 Helianthus annuus HOM05D000445 ORTHO05D000314 7.3e-18 93.6 50 88.0
HanXRQChr11g0326541 Helianthus annuus HOM05D000445 ORTHO05D000314 7.3e-18 93.6 50 88.0
arahy.Tifrunner.gnm1.ann1.R6YYA0 Arachis hypogaea HOM05D000445 ORTHO05D000314 2.1e-17 92.0 47 89.4
Medtr4g051435 Medicago truncatula HOM05D000445 ORTHO05D000314 3.1e-16 88.2 81 60.5
Lalb_Chr13g0292591 Lupinus albus HOM05D000445 ORTHO05D000314 9.0e-16 86.7 53 75.5
Oeu012817.1 Olea europaea HOM05D000445 ORTHO05D000314 2.0e-15 85.5 50 82.0
Lalb_Chr20g0115671 Lupinus albus HOM05D000445 ORTHO05D000314 3.4e-15 84.7 51 76.5
Medtr2g019700 Medicago truncatula HOM05D000445 ORTHO05D000314 3.8e-14 81.3 72 55.6
Nitab4.5_0001761g0270 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.2e-13 77.8 43 81.4
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.8e-11 72.4 38 84.2
Nitab4.5_0007104g0120 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.9e-10 68.9 37 81.1
Gorai.011G122200 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.5e-10 68.6 41 78.0
TPR.G25940 Trifolium pratense HOM05D000445 ORTHO05D000314 9.6e-10 66.6 37 81.1
Nn1g06697 Nelumbo nucifera HOM05D000445 ORTHO05D000314 4.8e-09 64.3 28 100.0
Nitab4.5_0022403g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-08 62.8 72 50.0
Medtr4g047930 Medicago truncatula HOM05D000445 ORTHO05D000314 1.5e-07 59.3 72 50.0
Medtr5g010700 Medicago truncatula HOM05D000445 ORTHO05D000314 1.5e-07 59.3 39 71.8
Medtr3g450940 Medicago truncatula HOM05D000445 ORTHO05D000314 4.5e-07 57.8 29 82.8
Medtr8g024820 Medicago truncatula HOM05D000445 ORTHO05D000314 4.5e-07 57.8 29 82.8
GSVIVG01011431001 Vitis vinifera HOM05D000445 ORTHO05D000314 2.2e-06 55.5 38 71.1


User provided reference genes

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