Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.0e-27 124.0 63 100.0
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 9.3e-16 86.3 58 77.6
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 9.3e-16 86.3 58 77.6
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 9.3e-16 86.3 58 77.6
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 9.3e-16 86.3 58 77.6
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 2.1e-15 85.1 58 77.6
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 6.1e-15 83.6 58 74.1
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.0e-14 82.8 58 74.1
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 1.0e-14 82.8 58 74.1
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-14 82.8 58 74.1
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-14 82.8 58 74.1
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-14 82.8 58 74.1
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-14 82.8 58 74.1
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-14 82.8 58 74.1
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.0e-14 82.8 58 74.1
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 1.0e-14 82.8 58 72.4
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-14 82.4 47 87.2
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 1.3e-14 82.4 55 74.5
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.8e-14 82.0 57 77.2
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.3e-14 81.6 58 74.1
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 2.3e-14 81.6 58 72.4
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.9e-14 80.9 47 85.1
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.9e-14 80.9 57 75.4
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.9e-14 80.9 57 75.4
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 6.7e-14 80.1 47 85.1
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 6.7e-14 80.1 47 85.1
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 6.7e-14 80.1 46 87.0
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 8.7e-14 79.7 58 74.1
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 8.7e-14 79.7 46 87.0
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 8.7e-14 79.7 57 75.4
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 8.7e-14 79.7 57 75.4
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 8.7e-14 79.7 47 85.1
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 8.7e-14 79.7 47 85.1
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 8.7e-14 79.7 47 85.1
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.5e-13 79.0 47 83.0
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.5e-13 79.0 47 83.0
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 1.5e-13 79.0 47 83.0
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.9e-13 78.6 55 76.4
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.9e-13 78.6 46 84.8
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.9e-13 78.6 58 70.7
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.5e-13 78.2 57 73.7
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 2.5e-13 78.2 58 70.7
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 3.3e-13 77.8 46 84.8
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 3.3e-13 77.8 57 73.7
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 3.3e-13 77.8 64 67.2
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 4.3e-13 77.4 58 72.4
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.3e-13 77.4 58 70.7
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.3e-13 77.4 58 70.7
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 4.3e-13 77.4 64 70.3
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 5.7e-13 77.0 57 71.9
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 5.7e-13 77.0 58 70.7
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 5.7e-13 77.0 57 70.2
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 5.7e-13 77.0 47 80.9
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 7.4e-13 76.6 38 100.0
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 7.4e-13 76.6 38 100.0
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 7.4e-13 76.6 57 71.9
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 9.7e-13 76.3 57 71.9
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 9.7e-13 76.3 45 82.2
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 9.7e-13 76.3 45 84.4
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 9.7e-13 76.3 58 70.7
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 9.7e-13 76.3 58 70.7
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 1.3e-12 75.9 58 65.5
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-12 75.9 57 71.9
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-12 75.9 47 80.9
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 1.3e-12 75.9 46 80.4
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 1.3e-12 75.9 62 66.1
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.8e-12 74.7 58 69.0
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 2.8e-12 74.7 57 70.2
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.8e-12 74.7 47 78.7
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 3.7e-12 74.3 45 82.2
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 3.7e-12 74.3 47 78.7
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 3.7e-12 74.3 47 78.7
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 3.7e-12 74.3 47 78.7
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 4.8e-12 73.9 57 70.2
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 6.3e-12 73.6 55 74.5
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.4e-11 72.4 46 78.3
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 2.4e-11 71.6 46 78.3
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 4.1e-11 70.9 57 66.7
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 6.9e-11 70.1 57 64.9
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 9.1e-11 69.7 46 76.1
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 9.1e-11 69.7 58 63.8
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.6e-10 68.2 44 77.3
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 4.5e-10 67.4 59 64.4
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.7e-10 66.6 36 91.7
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.5e-09 63.5 36 86.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 4.2e-08 60.8 42 71.4
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 5.5e-08 60.5 45 73.3
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 1.2e-07 59.3 33 87.9
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 2.1e-07 58.5 57 50.9
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.6e-07 57.8 45 71.1
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 6.1e-07 57.0 62 54.8
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 6.1e-07 57.0 32 87.5
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 6.1e-07 57.0 40 72.5
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.0e-06 56.2 34 79.4
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.3e-06 55.1 46 63.0
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 2.3e-06 55.1 46 63.0
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.0e-06 54.7 34 79.4


User provided reference genes

Program Settings