Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn020s41481 Nelumbo nucifera HOM05D000445 ORTHO05D000314 7.5e-39 163.3 79 100.0
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 6.4e-38 160.2 79 98.7
Nn3g16153 Nelumbo nucifera HOM05D000445 ORTHO05D000314 6.4e-38 160.2 79 98.7
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.3e-35 152.5 82 93.9
Sed0009579 Sechium edule HOM05D000445 ORTHO05D000314 8.6e-35 149.8 79 93.7
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 1.9e-34 148.7 79 92.4
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Nitab4.5_0005100g0090 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
PGSC0003DMG400015060 Solanum tuberosum HOM05D000445 ORTHO05D000314 3.3e-34 147.9 79 92.4
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 7.3e-34 146.7 78 92.3
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 9.5e-34 146.4 79 89.9
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 9.5e-34 146.4 79 92.4
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 1.2e-33 146.0 78 92.3
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 1.6e-33 145.6 79 89.9
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 1.6e-33 145.6 79 89.9
SGA_v2.0_scaffold2596G54158 Striga asiatica HOM05D000445 ORTHO05D000314 1.6e-33 145.6 78 91.0
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 2.8e-33 144.8 79 91.1
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 2.8e-33 144.8 79 91.1
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 2.8e-33 144.8 79 88.6
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 2.8e-33 144.8 79 88.6
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 8.1e-33 143.3 79 89.9
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.4e-32 141.7 79 89.9
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 2.4e-32 141.7 79 89.9
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 4.0e-32 141.0 79 88.6
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 4.0e-32 141.0 79 88.6
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 4.0e-32 141.0 79 88.6
RcHm_v2.0_Chr2g0118451 Rosa chinensis HOM05D000445 ORTHO05D000314 6.8e-32 140.2 77 90.9
Nitab4.5_0007104g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.0e-31 138.7 79 86.1
HanXRQChr00c0165g0572211 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr00c0394g0574511 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr00c0524g0575411 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr04g0127431 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 3.4e-31 137.9 79 86.1
BcaB02g11358 Brassica carinata HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
BolSC29t60535H Brassica oleracea HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
BolSC29t60563H Brassica oleracea HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
BolSC29t60617H Brassica oleracea HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
BraSC103t45415Z Brassica rapa HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
BraSC103t45439Z Brassica rapa HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
BraSC143t45672Z Brassica rapa HOM05D000445 ORTHO05D000314 4.4e-31 137.5 81 87.7
HanXRQChr11g0336111 Helianthus annuus HOM05D000445 ORTHO05D000314 9.9e-31 136.3 79 84.8
HanXRQChr11g0336131 Helianthus annuus HOM05D000445 ORTHO05D000314 9.9e-31 136.3 79 84.8
Nitab4.5_0020349g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 9.9e-31 136.3 79 84.8
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 1.3e-30 136.0 79 86.1
Thhalv10001808m.g Eutrema salsugineum HOM05D000445 ORTHO05D000314 1.3e-30 136.0 81 86.4
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-30 136.0 78 84.6
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-30 136.0 78 84.6
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 1.3e-30 136.0 78 84.6
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 1.7e-30 135.6 79 88.6
arahy.Tifrunner.gnm1.ann1.QI67VD Arachis hypogaea HOM05D000445 ORTHO05D000314 4.9e-30 134.0 79 84.8
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 4.9e-30 134.0 79 84.8
Peaxi162Scf00211g00218 Petunia axillaris HOM05D000445 ORTHO05D000314 4.9e-30 134.0 71 93.0
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.1e-29 132.9 89 77.5
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 1.1e-29 132.9 89 77.5
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 3.2e-29 131.3 77 84.4
Lalb_Chr01g0014991 Lupinus albus HOM05D000445 ORTHO05D000314 4.1e-29 131.0 79 86.1
Nitab4.5_0000011g0360 Nicotiana tabacum HOM05D000445 ORTHO05D000314 4.1e-29 131.0 78 82.1
arahy.Tifrunner.gnm1.ann1.FTZ997 Arachis hypogaea HOM05D000445 ORTHO05D000314 9.2e-29 129.8 79 82.3
AL2G20470 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 3.5e-28 127.9 77 85.7
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 3.5e-28 127.9 79 83.5
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 3.5e-28 127.9 79 83.5
Nn3g16494 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.0e-27 126.3 64 93.8
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 2.3e-27 125.2 76 85.5
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 2.3e-27 125.2 76 85.5
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 2.3e-27 125.2 76 85.5
HanXRQChr00c0392g0574461 Helianthus annuus HOM05D000445 ORTHO05D000314 1.9e-26 122.1 69 87.0
Migut.O00730 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.3e-26 121.3 63 93.7
LjContig00318g0009654 Lotus japonicus HOM05D000445 ORTHO05D000314 3.3e-26 121.3 81 80.2
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 3.3e-26 121.3 81 80.2
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 3.3e-26 121.3 81 80.2
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.3e-26 121.3 79 81.0
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 3.3e-26 121.3 79 81.0
Solyc03g120370.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 9.6e-26 119.8 64 90.6
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 8.1e-25 116.7 81 77.8
Solyc09g031820.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-24 115.9 64 87.5
Hund01216 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund11510 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund19325 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund26851 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund26897 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund27472 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund29661 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
Hund29851 Selenicereus undatus HOM05D000445 ORTHO05D000314 4.0e-24 114.4 60 91.7
HanXRQChr00c0788g0577401 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-23 112.5 64 85.9
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 1.5e-23 112.5 64 85.9
HanXRQChr13g0416601 Helianthus annuus HOM05D000445 ORTHO05D000314 1.9e-21 105.5 79 70.9
Solyc02g011940.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.2e-21 104.8 63 79.4
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 1.6e-20 102.4 66 80.3
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-20 102.4 79 68.4
Nitab4.5_0002616g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 7.8e-20 100.1 72 73.6
Solyc12g035780.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 4.8e-17 90.9 58 81.0
Carub.0026s0005 Capsella rubella HOM05D000445 ORTHO05D000314 6.9e-16 87.0 51 82.4
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 1.2e-15 86.3 78 59.0
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 1.2e-15 86.3 78 59.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 2.0e-15 85.5 53 84.9
BolSC47t61073H Brassica oleracea HOM05D000445 ORTHO05D000314 4.5e-15 84.3 49 89.8
Lj2C1239G59 Lonicera japonica HOM05D000445 ORTHO05D000314 1.3e-14 82.8 47 89.4
arahy.Tifrunner.gnm1.ann1.A0N0CH Arachis hypogaea HOM05D000445 ORTHO05D000314 4.9e-14 80.9 58 74.1
HanXRQChr00c0349g0573981 Helianthus annuus HOM05D000445 ORTHO05D000314 8.4e-14 80.1 47 85.1
Solyc03g078010.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-13 79.3 44 88.6
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 4.2e-13 77.8 40 90.0
Peaxi162Scf00147g00312 Petunia axillaris HOM05D000445 ORTHO05D010350 7.1e-13 77.0 41 92.7
CAN.G1648.15 Capsicum annuum HOM05D000445 ORTHO05D000314 9.3e-13 76.6 50 78.0
Hund25565 Selenicereus undatus HOM05D000445 ORTHO05D000314 2.1e-12 75.5 49 73.5
Migut.D01323 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.5e-12 74.7 47 85.1
TPR.G10646 Trifolium pratense HOM05D000445 ORTHO05D000314 1.3e-11 72.8 72 56.9
Solyc12g035980.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 5.1e-11 70.9 47 78.7
Solyc04g050850.3 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.7e-11 70.1 45 80.0
Lju5009C0G1 Lonicera japonica HOM05D000445 ORTHO05D000314 4.3e-10 67.8 40 85.0
Nn029s41592 Nelumbo nucifera HOM05D000445 ORTHO05D000314 9.6e-10 66.6 31 96.8
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 1.8e-08 62.4 75 50.7
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 3.1e-08 61.6 30 93.3
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 6.9e-08 60.5 28 96.4
HanXRQChr00c0434g0574681 Helianthus annuus HOM05D000445 ORTHO05D000314 6.9e-08 60.5 31 87.1
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 6.9e-08 60.5 31 87.1
HanXRQChr11g0333821 Helianthus annuus HOM05D000445 ORTHO05D000314 6.9e-08 60.5 31 87.1
Nitab4.5_0009685g0030 Nicotiana tabacum HOM05D003033 ORTHO05D003475 1.5e-07 59.3 34 88.2
BolSC47t61072H Brassica oleracea HOM05D000445 ORTHO05D000314 1.7e-06 55.8 31 83.9
BolSC49t61211H Brassica oleracea HOM05D000445 ORTHO05D000314 1.7e-06 55.8 31 83.9
BraSC143t45643Z Brassica rapa HOM05D000445 ORTHO05D000314 1.7e-06 55.8 31 83.9
BraSC59t46524Z Brassica rapa HOM05D000445 ORTHO05D000314 1.7e-06 55.8 31 83.9
EL10Ac9g20995 Beta vulgaris HOM05D000445 ORTHO05D000314 2.2e-06 55.5 31 80.6
Nitab4.5_0001761g0320 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.8e-06 54.7 29 93.1
Hund11176 Selenicereus undatus HOM05D000445 ORTHO05D000314 8.4e-06 53.5 28 85.7


User provided reference genes

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