Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0029023g0010 Nicotiana tabacum HOM05D004289 ORTHO05D005141 4.0e-51 204.5 108 100.0
Nitab4.5_0000016g0420 Nicotiana tabacum HOM05D004289 ORTHO05D005141 3.7e-44 181.4 116 86.2
PGSC0003DMG400025523 Solanum tuberosum HOM05D004289 ORTHO05D005141 1.6e-36 156.0 108 78.7
Peaxi162Scf00688g00334 Petunia axillaris HOM05D004289 ORTHO05D005141 3.7e-36 154.8 98 84.7
Sopen11g012540 Solanum pennellii HOM05D004289 ORTHO05D005141 1.1e-35 153.3 108 79.6
TWI23G1156 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 1.5e-21 106.3 95 65.3
CiPaw.03G018600 Carya illinoinensis HOM05D004289 ORTHO05D005141 2.6e-21 105.5 101 62.4
TWI14G0848 Tripterygium wilfordii HOM05D004289 ORTHO05D005141 2.6e-21 105.5 101 62.4
CiPaw.04G012500 Carya illinoinensis HOM05D004289 ORTHO05D005141 5.7e-21 104.4 101 64.4
Glyma.08G237900 Glycine max HOM05D004289 ORTHO05D005141 7.4e-21 104.0 101 57.4
Prupe.1G581300 Prunus persica HOM05D004289 ORTHO05D005141 7.4e-21 104.0 95 60.0
THA.LOC104823700 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 9.7e-21 103.6 103 56.3
Lj3g0023226 Lotus japonicus HOM05D004289 ORTHO05D005141 1.3e-20 103.2 101 55.4
TAR628G0462 Trochodendron aralioides HOM05D004289 ORTHO05D005141 2.2e-20 102.4 103 58.3
TPR.G34161 Trifolium pratense HOM05D004289 ORTHO05D005141 2.8e-20 102.1 102 57.8
Aqoxy5G00854 Aquilegia oxysepala HOM05D004289 ORTHO05D005141 4.8e-20 101.3 106 59.4
Sabra19G0088300 Salix brachista HOM05D004289 ORTHO05D005141 4.8e-20 101.3 96 62.5
QL09p003196 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-19 100.1 102 59.8
QL09p004791 Quercus lobata HOM05D004289 ORTHO05D005141 1.1e-19 100.1 102 59.8
Sp2g05730 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.8e-19 99.4 97 57.7
MD08G1244000 Malus domestica HOM05D004289 ORTHO05D005141 2.4e-19 99.0 95 55.8
Phvul.011G000300 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.1e-19 98.6 101 53.5
BraA06t23844Z Brassica rapa HOM05D004289 ORTHO05D005141 4.1e-19 98.2 106 56.6
THA.LOC104816824 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 4.1e-19 98.2 103 55.3
CARHR054450 Cardamine hirsuta HOM05D004289 ORTHO05D005141 5.3e-19 97.8 104 56.7
Prupe.1G549500 Prunus persica HOM05D004289 ORTHO05D005141 5.3e-19 97.8 90 62.2
BcaB03g13311 Brassica carinata HOM05D004289 ORTHO05D005141 1.5e-18 96.3 107 50.5
Medtr4g032200 Medicago truncatula HOM05D004289 ORTHO05D005141 2.0e-18 95.9 101 56.4
A06p06330 Brassica napus HOM05D004289 ORTHO05D005141 2.6e-18 95.5 89 58.4
BolC8t48938H Brassica oleracea HOM05D002143 ORTHO05D002260 2.6e-18 95.5 83 60.2
BraA08t35355Z Brassica rapa HOM05D002143 ORTHO05D002260 2.6e-18 95.5 83 61.4
MD15G1438300 Malus domestica HOM05D004289 ORTHO05D005141 2.6e-18 95.5 95 54.7
Thecc.02G016600 Theobroma cacao HOM05D004289 ORTHO05D005141 4.5e-18 94.7 97 54.6
AL1G67510 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 5.9e-18 94.4 104 52.9
C05p07700 Brassica napus HOM05D004289 ORTHO05D005141 5.9e-18 94.4 101 56.4
C08p13100 Brassica napus HOM05D004289 ORTHO05D005141 5.9e-18 94.4 88 56.8
Thhalv10009166m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 5.9e-18 94.4 103 53.4
MBI06_g06694_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 5.9e-18 94.4 101 56.4
Duzib052G0484 Durio zibethinus HOM05D004289 ORTHO05D005141 7.7e-18 94.0 97 53.6
TAR381G0514 Trochodendron aralioides HOM05D004289 ORTHO05D005141 1.0e-17 93.6 102 56.9
AT1G57765 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 1.3e-17 93.2 104 51.9
AL1G20190 Arabidopsis lyrata HOM05D004289 ORTHO05D005141 1.7e-17 92.8 103 52.4
CARHR009620 Cardamine hirsuta HOM05D004289 ORTHO05D005141 1.7e-17 92.8 103 51.5
PSO170G0294 Papaver somniferum HOM05D004289 ORTHO05D005141 1.7e-17 92.8 89 62.9
Sp1g08260 Schrenkiella parvula HOM05D004289 ORTHO05D005141 1.7e-17 92.8 103 51.5
Ah.02g128340 Amaranthus hybridus HOM05D004289 ORTHO05D005141 2.9e-17 92.0 99 54.5
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea HOM05D004289 ORTHO05D005141 2.9e-17 92.0 99 51.5
BolC5t29521H Brassica oleracea HOM05D004289 ORTHO05D005141 2.9e-17 92.0 68 67.6
Potri.019G077100 Populus trichocarpa HOM05D004289 ORTHO05D005141 2.9e-17 92.0 95 57.9
GSVIVG01025943001 Vitis vinifera HOM05D004289 ORTHO05D005141 2.9e-17 92.0 109 53.2
AT1G09645 Arabidopsis thaliana HOM05D004289 ORTHO05D005141 3.8e-17 91.7 103 52.4
Carub.0002s0680 Capsella rubella HOM05D004289 ORTHO05D005141 3.8e-17 91.7 96 52.1
Cc10_g09380 Coffea canephora HOM05D004289 ORTHO05D005141 3.8e-17 91.7 96 54.2
MELO3C016488.2 Cucumis melo HOM05D004289 ORTHO05D005141 3.8e-17 91.7 102 53.9
Migut.C01335 Erythranthe guttata HOM05D004289 ORTHO05D005141 6.5e-17 90.9 95 57.9
MD08G1216400 Malus domestica HOM05D004289 ORTHO05D005141 6.5e-17 90.9 91 57.1
Ciclev10003782m.g Citrus clementina HOM05D004289 ORTHO05D005141 8.5e-17 90.5 75 64.0
GSVIVG01023230001 Vitis vinifera HOM05D004289 ORTHO05D005141 1.1e-16 90.1 101 52.5
BcaC07g41867 Brassica carinata HOM05D004289 ORTHO05D005141 1.4e-16 89.7 103 49.5
C08p49340 Brassica napus HOM05D004289 ORTHO05D005141 1.4e-16 89.7 103 49.5
Nn5g27488 Nelumbo nucifera HOM05D004289 ORTHO05D005141 1.4e-16 89.7 102 55.9
VMungo0540G1552 Vigna mungo HOM05D004289 ORTHO05D005141 1.4e-16 89.7 70 64.3
Carub.0001s0900 Capsella rubella HOM05D004289 ORTHO05D005141 2.5e-16 89.0 102 52.0
MD05G1210300 Malus domestica HOM05D004289 ORTHO05D005141 2.5e-16 89.0 89 56.2
SalBow7G0958 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.5e-16 89.0 78 60.3
Aa31LG1G5340 Aethionema arabicum HOM05D004289 ORTHO05D005141 3.2e-16 88.6 102 50.0
Haze_13910 Corylus avellana HOM05D002143 ORTHO05D002260 3.2e-16 88.6 71 67.6
ECA236G0617 Erigeron canadensis HOM05D004289 ORTHO05D005141 4.2e-16 88.2 98 50.0
COL.COLO4_17708 Corchorus olitorius HOM05D004289 ORTHO05D005141 5.5e-16 87.8 97 50.5
MELO3C022208.2 Cucumis melo HOM05D004289 ORTHO05D005141 5.5e-16 87.8 102 52.9
Gohir.A03G215700 Gossypium hirsutum HOM05D004289 ORTHO05D005141 5.5e-16 87.8 97 51.5
PSO017G2658 Papaver somniferum HOM05D004289 ORTHO05D005141 5.5e-16 87.8 106 54.7
Cfa008122 Carpinus fangiana HOM05D000042 ORTHO05D000028 7.2e-16 87.4 74 67.6
MD15G1403500 Malus domestica HOM05D004289 ORTHO05D005141 7.2e-16 87.4 92 54.3
Sc16g0004250 Simmondsia chinensis HOM05D004289 ORTHO05D005141 7.2e-16 87.4 92 53.3
Thhalv10023770m.g Eutrema salsugineum HOM05D004289 ORTHO05D005141 9.4e-16 87.0 88 54.5
Lsat_1_v5_gn_9_119620 Lactuca sativa HOM05D004289 ORTHO05D005141 9.4e-16 87.0 93 51.6
Gohir.D02G237200 Gossypium hirsutum HOM05D004289 ORTHO05D005141 1.2e-15 86.7 97 50.5
Gorai.005G265800 Gossypium raimondii HOM05D004289 ORTHO05D005141 1.2e-15 86.7 97 50.5
Psat7g226600 Pisum sativum HOM05D004289 ORTHO05D005141 1.6e-15 86.3 97 51.5
Potri.004G226100 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.6e-15 86.3 98 55.1
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea HOM05D004289 ORTHO05D005141 2.1e-15 85.9 94 51.1
Sabra01G0171700 Salix brachista HOM05D004289 ORTHO05D005141 2.1e-15 85.9 98 54.1
FvH4_5g32580 Fragaria vesca HOM05D004289 ORTHO05D005141 3.6e-15 85.1 99 54.5
Oeu048223.2 Olea europaea HOM05D004289 ORTHO05D005141 4.7e-15 84.7 103 48.5
ClCG08G000420 Citrullus lanatus HOM05D004289 ORTHO05D005141 6.1e-15 84.3 102 51.0
FAN10G0807 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.1e-15 84.3 94 48.9
FAN13G3078 Fragaria x ananassa HOM05D004289 ORTHO05D005141 6.1e-15 84.3 99 54.5
RcHm_v2.0_Chr7g0229261 Rosa chinensis HOM05D004289 ORTHO05D005141 6.1e-15 84.3 89 55.1
BolC8t52471H Brassica oleracea HOM05D004289 ORTHO05D005141 8.0e-15 84.0 76 56.6
CsaV3_5G040360 Cucumis sativus L. HOM05D004289 ORTHO05D005141 1.0e-14 83.6 101 48.5
MBI17_g24966_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 1.0e-14 83.6 82 58.5
HPP92_002618 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.0e-14 83.6 90 52.2
HPP92_002677 Vanilla planifolia HOM05D004289 ORTHO05D005141 1.0e-14 83.6 90 52.2
Atru.chr6.550 Acer truncatum HOM05D004289 ORTHO05D005141 1.4e-14 83.2 57 71.9
Potri.003G005400 Populus trichocarpa HOM05D004289 ORTHO05D005141 1.4e-14 83.2 98 53.1
Sed0006384 Sechium edule HOM05D004289 ORTHO05D005141 1.4e-14 83.2 108 46.3
CSS0038950 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 1.8e-14 82.8 98 51.0
HanXRQChr06g0182751 Helianthus annuus HOM05D004289 ORTHO05D005141 1.8e-14 82.8 90 50.0
RcHm_v2.0_Chr7g0220501 Rosa chinensis HOM05D004289 ORTHO05D005141 1.8e-14 82.8 94 52.1
CSS0038337 Camellia sinensis var. sinensis HOM05D004289 ORTHO05D005141 3.9e-14 81.6 101 54.5
AUR62042238 Chenopodium quinoa HOM05D004289 ORTHO05D005141 3.9e-14 81.6 97 50.5
Phvul.006G220000 Phaseolus vulgaris HOM05D004289 ORTHO05D005141 3.9e-14 81.6 94 52.1
RcHm_v2.0_Chr5g0063911 Rosa chinensis HOM05D004289 ORTHO05D005141 3.9e-14 81.6 80 57.5
AUR62028456 Chenopodium quinoa HOM05D004289 ORTHO05D005141 5.2e-14 81.3 97 50.5
VMungo0540G0867 Vigna mungo HOM05D004289 ORTHO05D005141 5.2e-14 81.3 94 48.9
Zm00001eb288300 Zea mays HOM05D004289 ORTHO05D005141 5.2e-14 81.3 100 50.0
Oeu058640.2 Olea europaea HOM05D004289 ORTHO05D005141 6.7e-14 80.9 78 59.0
EL10Ac6g14140 Beta vulgaris HOM05D004289 ORTHO05D005141 1.1e-13 80.1 58 69.0
Manes.10G116200 Manihot esculenta HOM05D004289 ORTHO05D005141 1.1e-13 80.1 97 53.6
Duzib248G0764 Durio zibethinus HOM05D004289 ORTHO05D005141 1.5e-13 79.7 93 51.6
FAN18G0926 Fragaria x ananassa HOM05D004289 ORTHO05D005141 1.5e-13 79.7 92 46.7
SGA_v2.0_scaffold131G34372 Striga asiatica HOM05D004289 ORTHO05D005141 1.5e-13 79.7 93 50.5
Nitab4.5_0005169g0070 Nicotiana tabacum HOM05D004289 ORTHO05D005141 2.0e-13 79.3 77 57.1
MBI18_g30384_MAGBIO Magnolia biondii HOM05D004289 ORTHO05D005141 2.6e-13 79.0 82 56.1
RcHm_v2.0_Chr3g0495521 Rosa chinensis HOM05D004289 ORTHO05D005141 3.3e-13 78.6 80 56.2
vmacro19856 Vaccinium macrocarpon HOM05D004289 ORTHO05D005141 3.3e-13 78.6 84 50.0
ATR1136G135 Amborella trichopoda HOM05D004289 ORTHO05D005141 4.4e-13 78.2 80 51.2
PGR042G0739 Punica granatum HOM05D004289 ORTHO05D005141 4.4e-13 78.2 102 50.0
unitig_748.g7732 Utricularia gibba HOM05D004289 ORTHO05D005141 4.4e-13 78.2 91 50.5
Lsat_1_v5_gn_5_104580 Lactuca sativa HOM05D004289 ORTHO05D005141 5.7e-13 77.8 99 47.5
Actinidia38989 Actinidia chinensis HOM05D004289 ORTHO05D005141 9.7e-13 77.0 99 48.5
Migut.B00750 Erythranthe guttata HOM05D004289 ORTHO05D005141 1.3e-12 76.6 97 50.5
Eucgr.I02780 Eucalyptus grandis HOM05D004289 ORTHO05D005141 2.2e-12 75.9 101 49.5
Manes.07G025900 Manihot esculenta HOM05D004289 ORTHO05D005141 2.2e-12 75.9 100 51.0
FvH4_5g28260 Fragaria vesca HOM05D004289 ORTHO05D005141 4.8e-12 74.7 62 58.1
unitig_32.g11200 Utricularia gibba HOM05D004289 ORTHO05D005141 4.8e-12 74.7 91 47.3
THA.LOC104820335 Tarenaya hassleriana HOM05D004289 ORTHO05D005141 1.4e-11 73.2 101 44.6
FAN04G1595 Fragaria x ananassa HOM05D004289 ORTHO05D005141 2.4e-11 72.4 92 52.2
Os05g0419600 Oryza sativa ssp. japonica HOM05D004289 ORTHO05D005141 2.4e-11 72.4 84 56.0
FAN18G1872 Fragaria x ananassa HOM05D004289 ORTHO05D005141 5.3e-11 71.2 91 50.5
Aa31LG2G11220 Aethionema arabicum HOM05D004289 ORTHO05D005141 1.6e-10 69.7 92 47.8
QL02p100957 Quercus lobata HOM05D004289 ORTHO05D005141 2.0e-10 69.3 101 47.5
HanXRQChr03g0067991 Helianthus annuus HOM05D004289 ORTHO05D005141 5.9e-10 67.8 94 43.6
MSTRG.20324 Avicennia marina HOM05D004289 ORTHO05D005141 1.0e-09 67.0 77 50.6
Sed0020386 Sechium edule HOM05D004289 ORTHO05D005141 1.3e-09 66.6 96 45.8
CDE08G0453 Ceratophyllum demersum HOM05D004289 ORTHO05D005141 5.0e-09 64.7 93 41.9
SEGI_28610 Sequoiadendron giganteum HOM05D004061 ORTHO05D004693 5.0e-09 64.7 63 47.6
Zm00001eb349170 Zea mays HOM05D004289 ORTHO05D005141 5.0e-09 64.7 95 45.3
CiPaw.05G003600 Carya illinoinensis HOM05D004289 ORTHO05D005141 6.5e-09 64.3 68 57.4
Haze_10030 Corylus avellana HOM05D004289 ORTHO05D005141 1.5e-08 63.2 38 76.3
SalBow6G5095 Salvia bowleyana HOM05D004289 ORTHO05D005141 2.5e-08 62.4 104 39.4
Gohir.A04G133900 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.2e-08 62.0 40 72.5
Gohir.D04G177000 Gossypium hirsutum HOM05D004289 ORTHO05D005141 3.2e-08 62.0 40 72.5
Gorai.012G169900 Gossypium raimondii HOM05D004289 ORTHO05D005141 3.2e-08 62.0 40 72.5
SalBow7G1625 Salvia bowleyana HOM05D004289 ORTHO05D005141 4.2e-08 61.6 72 48.6
TPR.G2097 Trifolium pratense HOM05D004289 ORTHO05D005141 4.2e-08 61.6 50 60.0
AUR62042140 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.6e-07 59.7 75 44.0
AUR62044395 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.6e-07 59.7 75 44.0
Glyma.16G002000 Glycine max HOM05D004289 ORTHO05D005141 1.6e-07 59.7 95 44.2
MD12G1131500 Malus domestica HOM05D004061 ORTHO05D004693 2.1e-07 59.3 64 43.8
CANSAT80G1299 Cannabis sativa HOM05D004061 ORTHO05D004693 4.7e-07 58.2 73 47.9
Manes.08G000500 Manihot esculenta HOM05D004061 ORTHO05D004693 6.1e-07 57.8 74 45.9
AT3G53490 Arabidopsis thaliana HOM05D004061 ORTHO05D004693 1.0e-06 57.0 78 42.3
Lalb_Chr18g0061091 Lupinus albus HOM05D004289 ORTHO05D005141 1.0e-06 57.0 94 42.6
Potri.016G081900 Populus trichocarpa HOM05D004061 ORTHO05D004693 1.4e-06 56.6 82 42.7
VMungo1383G1764 Vigna mungo HOM05D004061 ORTHO05D004693 1.4e-06 56.6 75 42.7
Actinidia05286 Actinidia chinensis HOM05D004061 ORTHO05D004693 1.8e-06 56.2 74 44.6
AUR62041005 Chenopodium quinoa HOM05D004061 ORTHO05D004693 1.8e-06 56.2 59 52.5
Zm00001eb346430 Zea mays HOM05D004061 ORTHO05D004693 2.3e-06 55.8 59 50.8
Glyma.12G165600 Glycine max HOM05D004289 ORTHO05D005141 3.0e-06 55.5 96 42.7
vmacro08681 Vaccinium macrocarpon HOM05D004061 ORTHO05D004693 3.0e-06 55.5 78 43.6
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea HOM05D004289 ORTHO05D005141 4.0e-06 55.1 94 41.5
EL10Ac7g17278 Beta vulgaris HOM05D004061 ORTHO05D004693 4.0e-06 55.1 75 44.0
Pp3c17_20730 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.0e-06 55.1 72 38.9
Pp3c17_20731 Physcomitrium patens HOM05D004061 ORTHO05D004693 4.0e-06 55.1 72 38.9
SMO164G0167 Selaginella moellendorffii HOM05D004061 ORTHO05D004693 4.0e-06 55.1 82 40.2
Zm00001eb131400 Zea mays HOM05D004061 ORTHO05D001113 4.0e-06 55.1 71 45.1
arahy.Tifrunner.gnm1.ann1.Y28VT2 Arachis hypogaea HOM05D004061 ORTHO05D004693 5.2e-06 54.7 80 42.5
Lj1g0024664 Lotus japonicus HOM05D004061 ORTHO05D004693 5.2e-06 54.7 63 52.4
ATR0594G174 Amborella trichopoda HOM05D004061 ORTHO05D004693 6.7e-06 54.3 69 46.4
arahy.Tifrunner.gnm1.ann1.H9GTJP Arachis hypogaea HOM05D004061 ORTHO05D004693 6.7e-06 54.3 70 44.3
CARHR163390 Cardamine hirsuta HOM05D004061 ORTHO05D004693 6.7e-06 54.3 75 40.0
Pp3c2_4500 Physcomitrium patens HOM05D004061 ORTHO05D004693 6.7e-06 54.3 68 41.2
QL07p045968 Quercus lobata HOM05D004061 ORTHO05D004693 6.7e-06 54.3 48 58.3
Sabra16G0089600 Salix brachista HOM05D004061 ORTHO05D004693 8.8e-06 53.9 58 53.4


User provided reference genes

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