Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0026685g0010 Nicotiana tabacum HOM05D001332 ORTHO05D001894 3.0e-78 295.0 141 100.0
Peaxi162Scf01058g00147 Petunia axillaris HOM05D001332 ORTHO05D001894 1.8e-22 109.8 88 63.6
PGSC0003DMG400030434 Solanum tuberosum HOM05D001332 ORTHO05D001894 1.8e-22 109.8 85 65.9
Nitab4.5_0000744g0160 Nicotiana tabacum HOM05D001332 ORTHO05D001894 3.0e-22 109.0 72 75.0
Solyc06g076690.4 Solanum lycopersicum HOM05D001332 ORTHO05D001894 3.9e-22 108.6 85 64.7
Sopen06g033080 Solanum pennellii HOM05D001332 ORTHO05D001894 3.9e-22 108.6 85 64.7
CAN.G394.100 Capsicum annuum HOM05D001332 ORTHO05D001894 5.1e-22 108.2 85 65.9
Nitab4.5_0000744g0150 Nicotiana tabacum HOM05D001332 ORTHO05D001894 5.1e-22 108.2 85 65.9
Nitab4.5_0010287g0020 Nicotiana tabacum HOM05D001332 ORTHO05D001894 6.7e-22 107.8 85 65.9
Ciclev10029463m.g Citrus clementina HOM05D001332 ORTHO05D001894 1.4e-19 100.1 69 72.5
TWI75G1181 Tripterygium wilfordii HOM05D001332 ORTHO05D001894 1.4e-19 100.1 85 62.4
FAN25G3843 Fragaria x ananassa HOM05D001332 ORTHO05D001894 2.4e-19 99.4 73 67.1
FvH4_3g38010 Fragaria vesca HOM05D001332 ORTHO05D001894 3.1e-19 99.0 72 68.1
FvH4_3g38060 Fragaria vesca HOM05D001332 ORTHO05D001894 3.1e-19 99.0 72 68.1
FAN11G1207 Fragaria x ananassa HOM05D001332 ORTHO05D001894 3.1e-19 99.0 72 68.1
QL01p027096 Quercus lobata HOM05D001332 ORTHO05D001894 4.1e-19 98.6 85 63.5
Cfa011640 Carpinus fangiana HOM05D001332 ORTHO05D001894 5.3e-19 98.2 85 62.4
PGSC0003DMG400030433 Solanum tuberosum HOM05D001332 ORTHO05D001894 1.2e-18 97.1 72 68.1
Haze_24246 Corylus avellana HOM05D001332 ORTHO05D001894 1.5e-18 96.7 85 61.2
FAN16G0327 Fragaria x ananassa HOM05D001332 ORTHO05D001894 1.5e-18 96.7 71 67.6
Manes.17G018900 Manihot esculenta HOM05D001332 ORTHO05D001894 1.5e-18 96.7 85 60.0
QL01p027101 Quercus lobata HOM05D001332 ORTHO05D001894 1.5e-18 96.7 85 62.4
QL93p0183_0037 Quercus lobata HOM05D001332 ORTHO05D001894 1.5e-18 96.7 85 62.4
Hma1.2p1_0227F.1_g096200 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 2.0e-18 96.3 85 61.2
Peaxi162Scf01058g00148 Petunia axillaris HOM05D001332 ORTHO05D001894 3.4e-18 95.5 84 58.3
CiPaw.13G082100 Carya illinoinensis HOM05D001332 ORTHO05D001894 4.5e-18 95.1 85 58.8
RcHm_v2.0_Chr5g0068411 Rosa chinensis HOM05D001332 ORTHO05D001894 4.5e-18 95.1 71 67.6
MD11G1081500 Malus domestica HOM05D001332 ORTHO05D001894 5.9e-18 94.7 79 63.3
COL.COLO4_19099 Corchorus olitorius HOM05D001332 ORTHO05D001894 1.0e-17 94.0 72 66.7
QL01p027139 Quercus lobata HOM05D001332 ORTHO05D001894 1.0e-17 94.0 85 57.6
THA.LOC104800718 Tarenaya hassleriana HOM05D001332 ORTHO05D001894 1.3e-17 93.6 86 57.0
Dinv28605 Davidia involucrata HOM05D001332 ORTHO05D001894 1.7e-17 93.2 72 65.3
Gohir.A03G048700 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.2e-17 92.8 72 62.5
Gohir.D03G118400 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.2e-17 92.8 72 62.5
Gorai.003G124800 Gossypium raimondii HOM05D001332 ORTHO05D001894 2.2e-17 92.8 72 62.5
CANSAT54G0936 Cannabis sativa HOM05D001332 ORTHO05D001894 3.8e-17 92.0 87 56.3
Gohir.D05G091500 Gossypium hirsutum HOM05D001332 ORTHO05D001894 3.8e-17 92.0 72 63.9
Gorai.009G094000 Gossypium raimondii HOM05D001332 ORTHO05D001894 3.8e-17 92.0 72 63.9
RcHm_v2.0_Chr5g0068441 Rosa chinensis HOM05D001332 ORTHO05D001894 3.8e-17 92.0 102 52.9
Gohir.A05G090500 Gossypium hirsutum HOM05D001332 ORTHO05D001894 5.0e-17 91.7 72 62.5
DCAR_018943 Daucus carota HOM05D001332 ORTHO05D001894 8.5e-17 90.9 90 55.6
Solyc06g076680.4 Solanum lycopersicum HOM05D001332 ORTHO05D001894 8.5e-17 90.9 70 64.3
Duzib150G1063 Durio zibethinus HOM05D001332 ORTHO05D001894 1.1e-16 90.5 72 61.1
Thecc.09G306600 Theobroma cacao HOM05D001332 ORTHO05D001894 1.1e-16 90.5 74 62.2
arahy.Tifrunner.gnm1.ann1.KTFK8B Arachis hypogaea HOM05D001332 ORTHO05D001894 1.4e-16 90.1 83 57.8
CANSAT54G0012 Cannabis sativa HOM05D001332 ORTHO05D001894 1.4e-16 90.1 87 55.2
AUR62020089 Chenopodium quinoa HOM05D001332 ORTHO05D001894 1.4e-16 90.1 85 54.1
Hma1.2p1_0227F.1_g096210 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 1.4e-16 90.1 71 63.4
CSS0016525 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 1.9e-16 89.7 72 61.1
CSS0035664 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 1.9e-16 89.7 72 61.1
Gohir.A05G090600 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.5e-16 89.4 71 63.4
Gorai.009G094100 Gossypium raimondii HOM05D001332 ORTHO05D001894 2.5e-16 89.4 71 63.4
Sed0017259 Sechium edule HOM05D001332 ORTHO05D001894 3.2e-16 89.0 68 61.8
Actinidia25141 Actinidia chinensis HOM05D001332 ORTHO05D001894 5.5e-16 88.2 85 52.9
Glyma.02G224300 Glycine max HOM05D001332 ORTHO05D001894 5.5e-16 88.2 85 56.5
Prupe.6G061800 Prunus persica HOM05D001332 ORTHO05D001894 7.2e-16 87.8 72 62.5
Eucgr.J01944 Eucalyptus grandis HOM05D001332 ORTHO05D001894 9.4e-16 87.4 72 58.3
Hund04895 Selenicereus undatus HOM05D001332 ORTHO05D001894 9.4e-16 87.4 68 61.8
VMungo0647G0002 Vigna mungo HOM05D001332 ORTHO05D001894 9.4e-16 87.4 92 52.2
EL10Ac7g16117 Beta vulgaris HOM05D001332 ORTHO05D001894 1.2e-15 87.0 85 51.8
arahy.Tifrunner.gnm1.ann1.SQH6NL Arachis hypogaea HOM05D001332 ORTHO05D001894 1.6e-15 86.7 83 56.6
Sp4g12320 Schrenkiella parvula HOM05D001332 ORTHO05D001894 1.6e-15 86.7 84 56.0
Sopen06g033070 Solanum pennellii HOM05D001332 ORTHO05D001894 1.6e-15 86.7 70 62.9
AUR62001693 Chenopodium quinoa HOM05D001332 ORTHO05D001894 2.1e-15 86.3 81 53.1
Lj6P130T6 Lonicera japonica HOM05D001332 ORTHO05D001894 2.1e-15 86.3 78 57.7
Lj6P172T2 Lonicera japonica HOM05D001332 ORTHO05D001894 2.1e-15 86.3 78 57.7
MBI14_g32945_MAGBIO Magnolia biondii HOM05D001332 ORTHO05D001894 2.1e-15 86.3 74 55.4
CSS0019650 Camellia sinensis var. sinensis HOM05D001332 ORTHO05D001894 2.7e-15 85.9 85 52.9
Gohir.D05G091600 Gossypium hirsutum HOM05D001332 ORTHO05D001894 2.7e-15 85.9 71 62.0
Cc01_g13790 Coffea canephora HOM05D001332 ORTHO05D001894 3.6e-15 85.5 66 65.2
MELO3C025874.2 Cucumis melo HOM05D001332 ORTHO05D001894 3.6e-15 85.5 65 63.1
BcaB02g10265 Brassica carinata HOM05D001332 ORTHO05D001894 4.7e-15 85.1 79 57.0
A05p15800 Brassica napus HOM05D001332 ORTHO05D001894 4.7e-15 85.1 79 57.0
BraA05t20493Z Brassica rapa HOM05D001332 ORTHO05D001894 4.7e-15 85.1 79 57.0
Phvul.008G263600 Phaseolus vulgaris HOM05D001332 ORTHO05D001894 4.7e-15 85.1 72 61.1
FvH4_3g37930 Fragaria vesca HOM05D001332 ORTHO05D001894 7.9e-15 84.3 70 61.4
MD11G1081700 Malus domestica HOM05D001332 ORTHO05D001894 7.9e-15 84.3 82 56.1
C04p21230 Brassica napus HOM05D001332 ORTHO05D001894 1.0e-14 84.0 79 55.7
AL4G24310 Arabidopsis lyrata HOM05D001332 ORTHO05D001894 1.4e-14 83.6 71 62.0
CsaV3_6G016430 Cucumis sativus L. HOM05D001332 ORTHO05D001894 1.4e-14 83.6 65 61.5
Psat2g059720 Pisum sativum HOM05D001332 ORTHO05D001894 1.4e-14 83.6 85 52.9
GSVIVG01024800001 Vitis vinifera HOM05D001332 ORTHO05D001894 1.4e-14 83.6 72 58.3
Aa31LG5G6880 Aethionema arabicum HOM05D001332 ORTHO05D001894 1.8e-14 83.2 76 57.9
EL10Ac7g17954 Beta vulgaris HOM05D001332 ORTHO05D001894 1.8e-14 83.2 68 60.3
MD11G1081800 Malus domestica HOM05D001332 ORTHO05D001894 1.8e-14 83.2 77 57.1
Prupe.6G061900 Prunus persica HOM05D001332 ORTHO05D001894 1.8e-14 83.2 85 49.4
TAR623G1433 Trochodendron aralioides HOM05D001332 ORTHO05D001894 1.8e-14 83.2 71 60.6
BolC4t23649H Brassica oleracea HOM05D001332 ORTHO05D001894 2.3e-14 82.8 79 55.7
CARHR122930 Cardamine hirsuta HOM05D001332 ORTHO05D001894 2.3e-14 82.8 79 55.7
CDE04G0966 Ceratophyllum demersum HOM05D001332 ORTHO05D001894 3.0e-14 82.4 74 52.7
Prupe.6G062200 Prunus persica HOM05D001332 ORTHO05D001894 3.0e-14 82.4 68 64.7
Lalb_Chr04g0252391 Lupinus albus HOM05D001332 ORTHO05D001894 3.9e-14 82.0 85 49.4
Prupe.6G062300 Prunus persica HOM05D001332 ORTHO05D001894 3.9e-14 82.0 66 63.6
Cpa.g.sc9.219 Carica papaya HOM05D001332 ORTHO05D001894 5.2e-14 81.6 79 55.7
AUR62020085 Chenopodium quinoa HOM05D001332 ORTHO05D001894 5.2e-14 81.6 66 62.1
MD03G1077300 Malus domestica HOM05D001332 ORTHO05D001894 5.2e-14 81.6 77 61.0
LjContig00155g0020500 Lotus japonicus HOM05D001332 ORTHO05D001894 6.7e-14 81.3 81 53.1
MD03G1077500 Malus domestica HOM05D001332 ORTHO05D001894 6.7e-14 81.3 79 53.2
RcHm_v2.0_Chr5g0068361 Rosa chinensis HOM05D001332 ORTHO05D001894 8.8e-14 80.9 76 56.6
RcHm_v2.0_Chr5g0068391 Rosa chinensis HOM05D001332 ORTHO05D001894 8.8e-14 80.9 68 58.8
RcHm_v2.0_Chr5g0068401 Rosa chinensis HOM05D001332 ORTHO05D001894 8.8e-14 80.9 67 61.2
Ah.08g220480 Amaranthus hybridus HOM05D001332 ORTHO05D001894 1.1e-13 80.5 66 59.1
EL10Ac7g16116 Beta vulgaris HOM05D001332 ORTHO05D001894 1.1e-13 80.5 79 54.4
RcHm_v2.0_Chr5g0068381 Rosa chinensis HOM05D001332 ORTHO05D001894 1.1e-13 80.5 66 62.1
Ca_05578_v3 Cicer arietinum L. HOM05D001332 ORTHO05D001894 1.5e-13 80.1 85 50.6
Hma1.2p1_0227F.1_g096190 Hydrangea macrophylla HOM05D001332 ORTHO05D001894 1.5e-13 80.1 86 51.2
Potri.009G042100 Populus trichocarpa HOM05D001332 ORTHO05D001894 1.5e-13 80.1 69 56.5
FvH4_3g37990 Fragaria vesca HOM05D001332 ORTHO05D001894 2.6e-13 79.3 68 57.4
FvH4_3g38000 Fragaria vesca HOM05D001332 ORTHO05D001894 3.3e-13 79.0 67 59.7
FvH4_3g38050 Fragaria vesca HOM05D001332 ORTHO05D001894 3.3e-13 79.0 67 59.7
Oeu035008.1 Olea europaea HOM05D001332 ORTHO05D001894 3.3e-13 79.0 66 56.1
Thhalv10017356m.g Eutrema salsugineum HOM05D001332 ORTHO05D001894 4.4e-13 78.6 79 53.2
MD11G1081900 Malus domestica HOM05D001332 ORTHO05D001894 4.4e-13 78.6 66 60.6
Sc12g0000970 Simmondsia chinensis HOM05D001332 ORTHO05D001894 4.4e-13 78.6 81 50.6
TPR.G24033 Trifolium pratense HOM05D001332 ORTHO05D001894 4.4e-13 78.6 85 52.9
AT2G29590 Arabidopsis thaliana HOM05D001332 ORTHO05D001894 5.7e-13 78.2 71 57.7
FAN21G1631 Fragaria x ananassa HOM05D001332 ORTHO05D001894 5.7e-13 78.2 81 51.9
AUR62001697 Chenopodium quinoa HOM05D001332 ORTHO05D001894 7.4e-13 77.8 66 59.1
MD11G1081600 Malus domestica HOM05D001332 ORTHO05D001894 7.4e-13 77.8 64 64.1
ClCG02G019730 Citrullus lanatus HOM05D001332 ORTHO05D001894 9.7e-13 77.4 68 57.4
Aqoxy1G00712 Aquilegia oxysepala HOM05D001332 ORTHO05D001894 1.3e-12 77.0 66 54.5
Cpa.g.sc9.218 Carica papaya HOM05D001332 ORTHO05D001894 1.3e-12 77.0 71 54.9
Prupe.6G062000 Prunus persica HOM05D001332 ORTHO05D001894 1.3e-12 77.0 66 59.1
Lsat_1_v5_gn_9_25641 Lactuca sativa HOM05D001332 ORTHO05D001894 1.7e-12 76.6 79 50.6
Rhsim13G0073300 Rhododendron simsii HOM05D001332 ORTHO05D001894 1.7e-12 76.6 72 55.6
Medtr5g069640 Medicago truncatula HOM05D001332 ORTHO05D001894 2.2e-12 76.3 85 48.2
Sabra09G0029600 Salix brachista HOM05D001332 ORTHO05D001894 2.2e-12 76.3 67 56.7
Aqoxy1G00713 Aquilegia oxysepala HOM05D001332 ORTHO05D001894 3.7e-12 75.5 81 48.1
Peaxi162Scf01058g00149 Petunia axillaris HOM05D001332 ORTHO05D001894 3.7e-12 75.5 37 83.8
Prupe.6G062100 Prunus persica HOM05D001332 ORTHO05D001894 3.7e-12 75.5 67 61.2
RcHm_v2.0_Chr5g0068371 Rosa chinensis HOM05D001332 ORTHO05D001894 3.7e-12 75.5 72 55.6
ATR0618G330 Amborella trichopoda HOM05D001332 ORTHO05D001894 4.8e-12 75.1 72 50.0
MD03G1077400 Malus domestica HOM05D001332 ORTHO05D001894 4.8e-12 75.1 64 64.1
FvH4_3g37940 Fragaria vesca HOM05D001332 ORTHO05D001894 1.1e-11 73.9 67 58.2
FAN21G2022 Fragaria x ananassa HOM05D001332 ORTHO05D001894 1.1e-11 73.9 67 58.2
PSO384G3494 Papaver somniferum HOM05D001332 ORTHO05D001894 1.1e-11 73.9 66 57.6
MSTRG.21225 Avicennia marina HOM05D001332 ORTHO05D001894 1.8e-11 73.2 81 48.1
Carub.0004s1065 Capsella rubella HOM05D001332 ORTHO05D001894 2.4e-11 72.8 66 57.6
ECA247G2268 Erigeron canadensis HOM05D001332 ORTHO05D001894 2.4e-11 72.8 68 55.9
Migut.D00863 Erythranthe guttata HOM05D001332 ORTHO05D001894 2.4e-11 72.8 69 52.2
Hund04896 Selenicereus undatus HOM05D001332 ORTHO05D001894 3.1e-11 72.4 79 46.8
HanXRQChr08g0237251 Helianthus annuus HOM05D001332 ORTHO05D001894 4.1e-11 72.0 67 55.2
MD08G1031500 Malus domestica HOM05D001332 ORTHO05D001894 5.3e-11 71.6 66 53.0
PGR091G0007 Punica granatum HOM05D001332 ORTHO05D001894 7.0e-11 71.2 71 50.7
PGR119G0063 Punica granatum HOM05D001332 ORTHO05D001894 7.0e-11 71.2 71 50.7
unitig_37.g12831 Utricularia gibba HOM05D001332 ORTHO05D001894 7.0e-11 71.2 68 50.0
Rhsim13G0073400 Rhododendron simsii HOM05D001332 ORTHO05D001894 9.1e-11 70.9 72 51.4
ECA247G1945 Erigeron canadensis HOM05D001332 ORTHO05D001894 2.0e-10 69.7 66 50.0
Lsat_1_v5_gn_9_25661 Lactuca sativa HOM05D001332 ORTHO05D001894 3.5e-10 68.9 62 56.5
Os02g0521700 Oryza sativa ssp. japonica HOM05D001332 ORTHO05D001894 4.5e-10 68.6 73 49.3
FvH4_3g37970 Fragaria vesca HOM05D001332 ORTHO05D001894 1.3e-09 67.0 65 56.9
ECA247G3872 Erigeron canadensis HOM05D000731 ORTHO05D003300 2.9e-09 65.9 63 52.4
HanXRQChr15g0492661 Helianthus annuus HOM05D001332 ORTHO05D001894 6.5e-09 64.7 67 47.8
SalBow6G3098 Salvia bowleyana HOM05D001332 ORTHO05D001894 1.5e-08 63.5 69 50.7
Nn2g11367 Nelumbo nucifera HOM05D001332 ORTHO05D001894 1.9e-08 63.2 64 53.1
SEGI_04421 Sequoiadendron giganteum HOM05D001332 ORTHO05D001894 1.9e-08 63.2 68 41.2
Rhsim13G0073500 Rhododendron simsii HOM05D001332 ORTHO05D001894 4.2e-08 62.0 60 55.0
Nitab4.5_0010287g0040 Nicotiana tabacum HOM05D001332 ORTHO05D001894 2.1e-07 59.7 38 73.7
EL10Ac4g09746 Beta vulgaris HOM05D001332 ORTHO05D001894 2.7e-07 59.3 89 36.0
Sed0019998 Sechium edule HOM05D001332 ORTHO05D001894 6.1e-07 58.2 64 43.8
AUR62006976 Chenopodium quinoa HOM05D001332 ORTHO05D001894 8.0e-07 57.8 70 41.4
FvH4_3g11670 Fragaria vesca HOM05D001332 ORTHO05D001894 8.0e-07 57.8 70 41.4
FAN16G1064 Fragaria x ananassa HOM05D001332 ORTHO05D001894 8.0e-07 57.8 70 41.4
GSVIVG01000239001 Vitis vinifera HOM05D001332 ORTHO05D001894 8.0e-07 57.8 69 42.0
vmacro17790 Vaccinium macrocarpon HOM05D001332 ORTHO05D001894 1.0e-06 57.4 70 40.0
Rhsim08G0128700 Rhododendron simsii HOM05D001332 ORTHO05D001894 1.8e-06 56.6 70 40.0
TAR628G0149 Trochodendron aralioides HOM05D001332 ORTHO05D001894 1.8e-06 56.6 80 40.0
PGR119G0336 Punica granatum HOM05D001332 ORTHO05D001894 2.3e-06 56.2 65 43.1
Ah.02g118260 Amaranthus hybridus HOM05D001332 ORTHO05D001894 3.0e-06 55.8 70 35.7
Peaxi162Scf00651g00637 Petunia axillaris HOM05D001332 ORTHO05D001894 3.0e-06 55.8 72 38.9
Hund21760 Selenicereus undatus HOM05D001332 ORTHO05D001894 3.0e-06 55.8 72 37.5
Prupe.4G105000 Prunus persica HOM05D001332 ORTHO05D001894 4.0e-06 55.5 75 37.3
TAR626G0296 Trochodendron aralioides HOM05D001332 ORTHO05D007191 4.0e-06 55.5 97 39.2
AUR62000623 Chenopodium quinoa HOM05D001332 ORTHO05D001894 5.2e-06 55.1 70 37.1
Ciclev10026677m.g Citrus clementina HOM05D001332 ORTHO05D001894 5.2e-06 55.1 70 41.4
Haze_19350 Corylus avellana HOM05D001332 ORTHO05D001894 5.2e-06 55.1 70 40.0
PSO210G2973 Papaver somniferum HOM05D001332 ORTHO05D001894 5.2e-06 55.1 71 38.0
Actinidia36584 Actinidia chinensis HOM05D001332 ORTHO05D001894 6.7e-06 54.7 65 41.5
CDE02G4323 Ceratophyllum demersum HOM05D001332 ORTHO05D007191 6.7e-06 54.7 93 41.9
Nn1g08391 Nelumbo nucifera HOM05D001332 ORTHO05D001894 6.7e-06 54.7 75 36.0


User provided reference genes

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