Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0026219g0010 Nicotiana tabacum HOM05D000096 ORTHO05D000045 7.3e-55 216.9 100 100.0
Nitab4.5_0000992g0120 Nicotiana tabacum HOM05D000096 ORTHO05D000045 1.4e-42 176.0 98 85.7
Nitab4.5_0003046g0040 Nicotiana tabacum HOM05D000096 ORTHO05D000045 3.4e-20 101.7 67 65.7
PGSC0003DMG400005511 Solanum tuberosum HOM05D000096 ORTHO05D000045 4.5e-20 101.3 61 67.2
Nitab4.5_0004310g0040 Nicotiana tabacum HOM05D000096 ORTHO05D000045 9.3e-18 93.6 65 60.0
Ah.04g157900 Amaranthus hybridus HOM05D000096 ORTHO05D000045 6.2e-14 80.9 63 55.6
AUR62017545 Chenopodium quinoa HOM05D000096 ORTHO05D000045 5.3e-13 77.8 60 55.0
BraA07t28121Z Brassica rapa HOM05D000096 ORTHO05D000045 6.9e-13 77.4 65 58.5
C07p07960 Brassica napus HOM05D000096 ORTHO05D000045 9.0e-13 77.0 71 54.9
BolC7t41213H Brassica oleracea HOM05D000096 ORTHO05D000045 9.0e-13 77.0 71 54.9
TPR.G1782 Trifolium pratense HOM05D000096 ORTHO05D000045 5.8e-12 74.3 64 50.0
C06p01070 Brassica napus HOM05D000353 ORTHO05D000174 1.3e-11 73.2 67 50.7
BolC1t04274H Brassica oleracea HOM05D008937 ORTHO05D014946 1.3e-11 73.2 70 45.7
MD16G1146300 Malus domestica HOM05D000096 ORTHO05D000045 1.7e-11 72.8 62 48.4
A09p64020 Brassica napus HOM05D000096 ORTHO05D000045 2.2e-11 72.4 76 43.4
A10p02610 Brassica napus HOM05D000096 ORTHO05D000045 2.2e-11 72.4 70 47.1
C04p06370 Brassica napus HOM05D000353 ORTHO05D000174 2.9e-11 72.0 67 49.3
BolC9t56983H Brassica oleracea HOM05D023067 ORTHO05D000045 2.9e-11 72.0 79 41.8
BraA02t09043Z Brassica rapa HOM05D000096 ORTHO05D014489 2.9e-11 72.0 70 47.1
A01p15630 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-11 71.6 63 52.4
A02p01740 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-11 71.6 67 49.3
A06p16970 Brassica napus HOM05D000353 ORTHO05D000174 3.8e-11 71.6 67 49.3
C02p36440 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-11 71.6 63 52.4
C09p46800 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-11 71.6 63 52.4
C09p57380 Brassica napus HOM05D001407 ORTHO05D001314 3.8e-11 71.6 70 45.7
BraA02t07162Z Brassica rapa HOM05D000096 ORTHO05D000045 3.8e-11 71.6 63 52.4
BraA02t07815Z Brassica rapa HOM05D000096 ORTHO05D014946 3.8e-11 71.6 70 45.7
BraA06t24806Z Brassica rapa HOM05D000353 ORTHO05D000174 3.8e-11 71.6 67 49.3
A06p18360 Brassica napus HOM05D008937 ORTHO05D000045 4.9e-11 71.2 70 45.7
C03p27530 Brassica napus HOM05D000096 ORTHO05D000045 4.9e-11 71.2 70 47.1
C03p57780 Brassica napus HOM05D000096 ORTHO05D000045 4.9e-11 71.2 70 47.1
Psat5g170160 Pisum sativum HOM05D000096 ORTHO05D000045 4.9e-11 71.2 64 48.4
C09p38890 Brassica napus HOM05D000096 ORTHO05D000045 6.5e-11 70.9 63 54.0
BolC9t56755H Brassica oleracea HOM05D000353 ORTHO05D000174 6.5e-11 70.9 63 54.0
C01p09670 Brassica napus HOM05D000096 ORTHO05D032959 8.4e-11 70.5 70 47.1
A07p41080 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-10 70.1 63 49.2
C01p15660 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-10 70.1 63 52.4
C09p37720 Brassica napus HOM05D000096 ORTHO05D000045 1.1e-10 70.1 63 49.2
BolC1t01519H Brassica oleracea HOM05D000096 ORTHO05D000045 1.1e-10 70.1 63 52.4
A02p32450 Brassica napus HOM05D000096 ORTHO05D000045 1.4e-10 69.7 61 52.5
C06p10180 Brassica napus HOM05D000096 ORTHO05D000045 1.4e-10 69.7 70 45.7
C08p14690 Brassica napus HOM05D000096 ORTHO05D000045 1.4e-10 69.7 64 48.4
C09p53860 Brassica napus HOM05D000096 ORTHO05D000045 1.9e-10 69.3 64 50.0
BolC3t18759H Brassica oleracea HOM05D000353 ORTHO05D000174 1.9e-10 69.3 65 49.2
TWI23G0742 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.9e-10 69.3 61 44.3
C03p46920 Brassica napus HOM05D000096 ORTHO05D000045 2.5e-10 68.9 74 45.9
TWI75G0251 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 2.5e-10 68.9 61 44.3
A01p09380 Brassica napus HOM05D000096 ORTHO05D000045 3.2e-10 68.6 75 44.0
A05p20940 Brassica napus HOM05D000096 ORTHO05D000045 3.2e-10 68.6 62 50.0
C01p13760 Brassica napus HOM05D000096 ORTHO05D000045 3.2e-10 68.6 75 44.0
Psat4g139960 Pisum sativum HOM05D013709 ORTHO05D000045 3.2e-10 68.6 66 45.5
Psat5g017200 Pisum sativum HOM05D000096 ORTHO05D000045 3.2e-10 68.6 66 45.5
C06p03040 Brassica napus HOM05D012107 ORTHO05D019900 4.2e-10 68.2 61 50.8
C07p10860 Brassica napus HOM05D000096 ORTHO05D000045 5.5e-10 67.8 65 44.6
C07p10880 Brassica napus HOM05D000096 ORTHO05D000045 5.5e-10 67.8 65 44.6
TPR.G20413 Trifolium pratense HOM05D000096 ORTHO05D000045 5.5e-10 67.8 63 50.8
BolC7t45259H Brassica oleracea HOM05D000096 ORTHO05D009779 7.1e-10 67.4 62 48.4
C03p56990 Brassica napus HOM05D000096 ORTHO05D000045 9.3e-10 67.0 64 45.3
C04p41010 Brassica napus HOM05D000096 ORTHO05D000045 9.3e-10 67.0 65 47.7
BolC3t16681H Brassica oleracea HOM05D012476 ORTHO05D000045 9.3e-10 67.0 63 46.0
BolC3t17976H Brassica oleracea HOM05D000096 ORTHO05D000045 9.3e-10 67.0 64 45.3
BolC4t25684H Brassica oleracea HOM05D000096 ORTHO05D000045 9.3e-10 67.0 65 47.7
ECA232G4551 Erigeron canadensis HOM05D000096 ORTHO05D000045 9.3e-10 67.0 65 46.2
A02p09270 Brassica napus HOM05D000096 ORTHO05D000045 1.2e-09 66.6 64 46.9
C01p14580 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-09 66.2 63 46.0
C02p58080 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-09 66.2 64 46.9
C07p08260 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-09 66.2 63 46.0
BolC9t54268H Brassica oleracea HOM05D000096 ORTHO05D018655 1.6e-09 66.2 64 46.9
BraA09t38421Z Brassica rapa HOM05D000096 ORTHO05D000045 1.6e-09 66.2 63 47.6
TWI73G0764 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.6e-09 66.2 59 45.8
C03p18670 Brassica napus HOM05D000096 ORTHO05D000045 2.1e-09 65.9 62 53.2
C09p27110 Brassica napus HOM05D000096 ORTHO05D000045 2.1e-09 65.9 62 53.2
BolC8t47057H Brassica oleracea HOM05D000096 ORTHO05D000045 2.1e-09 65.9 62 53.2
A07p12900 Brassica napus HOM05D000096 ORTHO05D000045 2.7e-09 65.5 60 48.3
C05p57160 Brassica napus HOM05D000096 ORTHO05D014489 2.7e-09 65.5 70 42.9
BolC5t34379H Brassica oleracea HOM05D000096 ORTHO05D014489 2.7e-09 65.5 70 42.9
BraA02t08215Z Brassica rapa HOM05D000096 ORTHO05D000045 2.7e-09 65.5 62 53.2
QL09p000096 Quercus lobata HOM05D000096 ORTHO05D000045 2.7e-09 65.5 61 49.2
TWI79G1005 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 2.7e-09 65.5 62 45.2
C04p24460 Brassica napus HOM05D000096 ORTHO05D042345 3.5e-09 65.1 65 44.6
C09p36130 Brassica napus HOM05D000096 ORTHO05D018655 3.5e-09 65.1 64 46.9
BolC9t56452H Brassica oleracea HOM05D000096 ORTHO05D000045 3.5e-09 65.1 64 46.9
BolC7t41570H Brassica oleracea HOM05D000096 ORTHO05D020038 4.6e-09 64.7 60 46.7
BraA09t38075Z Brassica rapa HOM05D000096 ORTHO05D020038 6.0e-09 64.3 60 48.3
Psat5g031120 Pisum sativum HOM05D000096 ORTHO05D000045 6.0e-09 64.3 62 48.4
C02p34870 Brassica napus HOM05D000096 ORTHO05D000045 7.9e-09 63.9 65 40.0
BolC3t16020H Brassica oleracea HOM05D000353 ORTHO05D000174 7.9e-09 63.9 60 48.3
C02p26030 Brassica napus HOM05D000096 ORTHO05D000045 1.0e-08 63.5 60 48.3
C06p37800 Brassica napus HOM05D000096 ORTHO05D000174 1.0e-08 63.5 62 48.4
BolC6t38882H Brassica oleracea HOM05D000353 ORTHO05D032358 1.0e-08 63.5 62 48.4
BolC9t57838H Brassica oleracea HOM05D000096 ORTHO05D020038 1.0e-08 63.5 60 45.0
TPR.G8108 Trifolium pratense HOM05D000096 ORTHO05D000045 1.0e-08 63.5 63 44.4
TPR.G5784 Trifolium pratense HOM05D000096 ORTHO05D000045 1.8e-08 62.8 89 36.0
TWI56G0481 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.8e-08 62.8 57 45.6
A03p68710 Brassica napus HOM05D000096 ORTHO05D000045 2.3e-08 62.4 60 46.7
BraA04t16942Z Brassica rapa HOM05D000096 ORTHO05D000045 2.3e-08 62.4 60 46.7
C07p08220 Brassica napus HOM05D000096 ORTHO05D000045 3.0e-08 62.0 63 44.4
BolC2t07401H Brassica oleracea HOM05D011319 ORTHO05D031747 3.0e-08 62.0 62 45.2
RcHm_v2.0_Chr4g0413131 Rosa chinensis HOM05D032496 ORTHO05D000045 3.0e-08 62.0 60 48.3
TWI31G1449 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 3.0e-08 62.0 57 40.4
TWI39G0178 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 3.0e-08 62.0 57 40.4
TWI79G0368 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 3.0e-08 62.0 57 40.4
Glyma.18G152100 Glycine max HOM05D000096 ORTHO05D000045 3.9e-08 61.6 63 46.0
TWI53G1347 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 3.9e-08 61.6 60 38.3
SGA_v2.0_scaffold100G29549 Striga asiatica HOM05D000096 ORTHO05D000045 5.1e-08 61.2 63 44.4
TWI38G2100 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 5.1e-08 61.2 57 45.6
TWI63G1631 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 5.1e-08 61.2 61 37.7
Medtr8g039210 Medicago truncatula HOM05D000096 ORTHO05D000045 6.7e-08 60.8 71 42.3
TWI53G1883 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 6.7e-08 60.8 57 45.6
A03p68310 Brassica napus HOM05D000096 ORTHO05D000045 8.7e-08 60.5 60 45.0
Potri.009G002650 Populus trichocarpa HOM05D000096 ORTHO05D000045 1.1e-07 60.1 60 45.0
ECA247G3803 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.5e-07 59.7 65 38.5
Psat5g227080 Pisum sativum HOM05D040475 ORTHO05D000045 1.5e-07 59.7 59 45.8
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 1.5e-07 59.7 61 44.3
BraA01t02638Z Brassica rapa HOM05D000096 ORTHO05D020038 1.9e-07 59.3 60 45.0
Ciclev10003309m.g Citrus clementina HOM05D000096 ORTHO05D000045 1.9e-07 59.3 59 44.1
TPR.G9630 Trifolium pratense HOM05D000096 ORTHO05D000045 1.9e-07 59.3 64 42.2
TWI31G0351 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.9e-07 59.3 57 38.6
C05p53320 Brassica napus HOM05D000096 ORTHO05D000045 2.5e-07 58.9 60 41.7
ECA234G3439 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.5e-07 58.9 66 42.4
C09p49170 Brassica napus HOM05D000096 ORTHO05D000045 3.3e-07 58.5 60 41.7
Carub.0013s0008 Capsella rubella HOM05D000096 ORTHO05D000045 3.3e-07 58.5 60 45.0
Ciclev10033859m.g Citrus clementina HOM05D000096 ORTHO05D000045 3.3e-07 58.5 59 44.1
Lj6g0026524 Lotus japonicus HOM05D000096 ORTHO05D000045 3.3e-07 58.5 63 41.3
TPR.G21912 Trifolium pratense HOM05D000096 ORTHO05D000045 3.3e-07 58.5 61 42.6
TPR.G40020 Trifolium pratense HOM05D000096 ORTHO05D000045 3.3e-07 58.5 62 40.3
PSO761G0635 Papaver somniferum HOM05D000096 ORTHO05D000045 4.3e-07 58.2 59 42.4
Aqoxy1G02586 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 5.7e-07 57.8 61 44.3
A05p21280 Brassica napus HOM05D000096 ORTHO05D010037 5.7e-07 57.8 60 40.0
HanXRQChr01g0011121 Helianthus annuus HOM05D000096 ORTHO05D000045 5.7e-07 57.8 54 46.3
Potri.013G071501 Populus trichocarpa HOM05D000096 ORTHO05D000045 5.7e-07 57.8 49 46.9
C07p19090 Brassica napus HOM05D000096 ORTHO05D000045 7.4e-07 57.4 60 41.7
CANSAT01G0186 Cannabis sativa HOM05D000096 ORTHO05D000045 7.4e-07 57.4 67 40.3
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 9.6e-07 57.0 63 41.3
Lj4g0021531 Lotus japonicus HOM05D000096 ORTHO05D000045 9.6e-07 57.0 55 43.6
A08p06590 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-06 56.6 61 42.6
BraA08t32675Z Brassica rapa HOM05D000096 ORTHO05D000045 1.3e-06 56.6 61 42.6
TPR.G15924 Trifolium pratense HOM05D000096 ORTHO05D000045 1.3e-06 56.6 63 42.9
Os12g0539700 Oryza sativa ssp. japonica HOM05D000096 ORTHO05D000045 1.6e-06 56.2 83 36.1
TWI12G0917 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.6e-06 56.2 61 32.8
BolC4t24210H Brassica oleracea HOM05D012107 ORTHO05D014512 2.1e-06 55.8 50 48.0
Lj4g0021004 Lotus japonicus HOM05D000096 ORTHO05D000045 2.1e-06 55.8 55 45.5
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 2.1e-06 55.8 64 39.1
BolC8t48490H Brassica oleracea HOM05D000096 ORTHO05D010037 2.8e-06 55.5 60 40.0
ECA247G0444 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.8e-06 55.5 64 40.6
HanXRQChr10g0297001 Helianthus annuus HOM05D000096 ORTHO05D000045 2.8e-06 55.5 64 35.9
Hma1.2p1_0839F.1_g226420 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 2.8e-06 55.5 59 44.1
ECA248G2741 Erigeron canadensis HOM05D000096 ORTHO05D000045 3.7e-06 55.1 60 40.0
BolC5t33121H Brassica oleracea HOM05D000096 ORTHO05D000045 4.8e-06 54.7 61 41.0
Hma1.2p1_2176F.1_g316140 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 4.8e-06 54.7 65 38.5
Psat7g217080 Pisum sativum HOM05D013709 ORTHO05D014512 4.8e-06 54.7 58 43.1
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 4.8e-06 54.7 64 39.1
COL.COLO4_16671 Corchorus olitorius HOM05D000096 ORTHO05D000045 6.2e-06 54.3 75 33.3
Medtr0003s0280 Medicago truncatula HOM05D000096 ORTHO05D014512 8.2e-06 53.9 53 45.3


User provided reference genes

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