Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.0e-100 367.9 195 100.0
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 3.7e-87 325.1 198 82.8
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.8e-78 296.2 193 76.2
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.5e-76 287.7 196 76.0
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 5.2e-73 278.1 199 80.4
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 7.3e-67 257.7 195 72.3
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 9.5e-67 257.3 197 72.1
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 7.5e-64 247.7 199 73.4
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.2e-63 246.1 197 70.6
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.4e-62 243.4 188 69.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.3e-60 236.1 190 72.6
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.8e-58 229.2 196 71.9
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.9e-55 219.2 196 70.4
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.5e-51 206.1 186 64.0
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 3.7e-47 192.2 186 58.6
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 7.1e-46 188.0 190 60.5
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 1.2e-45 187.2 195 57.9
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 2.1e-45 186.4 192 56.2
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 6.0e-45 184.9 200 52.0
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.0e-44 184.1 186 57.0
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.0e-44 184.1 197 54.8
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 5.1e-44 181.8 195 53.8
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 8.6e-44 181.0 209 53.1
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.9e-43 179.9 196 55.1
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 1.8e-41 173.3 195 51.3
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 2.4e-41 172.9 191 52.9
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 6.8e-41 171.4 190 54.2
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.9e-41 171.0 192 51.6
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.0e-40 169.9 197 48.7
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 2.6e-40 169.5 198 50.5
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 1.7e-39 166.8 202 50.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 3.8e-39 165.6 203 58.6
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 6.4e-39 164.9 191 52.9
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.1e-38 164.1 194 48.5
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 4.1e-38 162.2 201 49.3
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 9.2e-38 161.0 191 51.8
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.0e-36 157.5 195 49.7
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 1.3e-36 157.1 192 46.9
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.7e-36 156.8 192 56.8
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.7e-36 156.8 186 48.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 3.9e-36 155.6 184 48.4
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 5.1e-36 155.2 194 49.0
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 5.1e-36 155.2 192 54.7
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 1.1e-35 154.1 190 49.5
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.5e-35 153.7 193 49.2
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.9e-35 153.3 195 46.7
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 1.9e-35 153.3 207 46.4
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 3.3e-35 152.5 201 44.8
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 3.3e-35 152.5 189 47.1
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.6e-35 151.8 199 48.7
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 9.6e-35 151.0 194 46.4
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.2e-34 150.6 199 49.7
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 1.6e-34 150.2 187 49.7
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.8e-34 149.4 198 47.5
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 3.6e-34 149.1 202 47.0
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 6.2e-34 148.3 200 46.0
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-33 147.5 190 44.2
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 1.4e-33 147.1 190 49.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.4e-33 147.1 196 45.4
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.4e-33 146.4 193 46.6
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 5.2e-33 145.2 190 44.7
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.2e-32 144.1 194 46.9
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 1.2e-32 144.1 191 46.1
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.2e-32 144.1 189 50.3
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-32 143.7 196 44.4
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-32 143.7 198 43.9
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.0e-32 143.3 198 44.4
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.0e-32 143.3 198 44.4
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 3.4e-32 142.5 194 45.9
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 3.4e-32 142.5 184 45.7
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 4.4e-32 142.1 195 46.7
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 5.8e-32 141.7 189 42.9
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 9.9e-32 141.0 190 51.6
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.9e-32 141.0 193 47.7
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 1.3e-31 140.6 205 44.4
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.3e-31 140.6 193 46.6
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.9e-31 139.4 190 43.2
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-31 139.4 191 45.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 2.9e-31 139.4 196 43.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 3.8e-31 139.0 188 42.0
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 3.8e-31 139.0 192 46.9
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 6.4e-31 138.3 194 46.4
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 6.4e-31 138.3 199 44.2
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.4e-31 138.3 190 43.7
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 8.4e-31 137.9 181 43.1
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 8.4e-31 137.9 188 43.6
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 8.4e-31 137.9 201 44.3
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.1e-30 137.5 189 41.8
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.1e-30 137.5 188 42.6
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-30 137.5 191 46.1
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.1e-30 137.5 198 43.4
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.1e-30 137.5 198 43.4
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.1e-30 137.5 198 43.4
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 1.1e-30 137.5 189 47.6
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.4e-30 137.1 185 49.7
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.4e-30 137.1 188 42.6
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-30 137.1 188 42.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 1.4e-30 137.1 187 46.0
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.9e-30 136.7 189 42.9
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.9e-30 136.7 189 42.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-30 136.0 191 45.5
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 9.3e-30 134.4 198 43.4
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.2e-29 134.0 189 52.9
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.2e-29 134.0 190 42.1
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.6e-29 133.7 193 42.5
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 2.1e-29 133.3 189 40.7
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 2.1e-29 133.3 189 40.7
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 2.7e-29 132.9 198 43.4
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 4.6e-29 132.1 189 44.4
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 6.0e-29 131.7 197 43.1
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.8e-29 131.3 189 44.4
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 1.7e-28 130.2 189 41.8
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.7e-28 130.2 194 42.8
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 2.3e-28 129.8 189 41.3
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.9e-28 129.0 190 42.1
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 3.9e-28 129.0 185 47.6
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 5.1e-28 128.6 183 43.7
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 6.6e-28 128.3 189 42.3
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.6e-28 128.3 188 41.5
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 8.7e-28 127.9 214 43.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 3.3e-27 125.9 189 51.3
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.3e-27 125.6 189 41.8
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.3e-26 124.0 188 41.0
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 2.1e-26 123.2 169 47.9
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 3.6e-26 122.5 289 32.2
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.8e-26 122.1 194 40.2
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 8.1e-26 121.3 190 43.2
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 8.1e-26 121.3 187 40.6
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 3.1e-25 119.4 187 41.7
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.1e-25 119.4 191 40.8
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 6.9e-25 118.2 193 39.4
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 9.0e-25 117.9 183 45.4
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 9.0e-25 117.9 192 39.6
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-24 115.5 186 42.5
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 5.8e-24 115.2 192 39.1
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.6e-24 114.8 173 43.4
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.3e-23 114.0 191 40.3
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.9e-23 112.8 190 40.5
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 4.9e-23 112.1 192 38.5
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 4.9e-23 112.1 192 38.5
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 4.9e-23 112.1 192 38.5
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 2.4e-22 109.8 196 41.3
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 3.2e-22 109.4 180 41.1
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 4.2e-22 109.0 195 37.4
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.6e-21 107.1 190 40.5
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-21 106.7 172 42.4
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.5e-19 100.5 161 42.9
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 2.5e-19 99.8 151 44.4
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.6e-19 97.8 187 38.0
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.3e-18 97.4 172 40.1
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.1e-17 92.8 162 41.4
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 6.9e-17 91.7 208 34.1
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 1.2e-16 90.9 230 34.8
CAN.G69.6 Capsicum annuum HOM05D003790 ORTHO05D004481 4.5e-16 89.0 80 70.0
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.4e-14 84.0 103 42.7
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-14 83.6 94 47.9
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.4e-14 83.2 100 46.0
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.5e-14 82.0 94 47.9
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 9.3e-14 81.3 101 42.6
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.2e-13 80.9 189 32.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.1e-13 80.1 94 47.9
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 2.1e-13 80.1 211 38.4
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 6.0e-13 78.6 181 35.9
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.3e-12 77.4 183 32.2
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 2.3e-12 76.6 206 34.0
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 6.7e-12 75.1 155 37.4
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 4.3e-11 72.4 202 39.6
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.3e-10 70.9 189 30.2
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 2.8e-10 69.7 193 30.6
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 6.2e-10 68.6 195 31.3
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.1e-09 67.8 161 37.9
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 1.4e-09 67.4 186 29.0
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 6.9e-09 65.1 184 29.3
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.2e-08 64.3 66 51.5
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-08 63.5 60 45.0
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-07 60.5 45 62.2
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 2.9e-07 59.7 185 31.4
ClCG05G012470 Citrullus lanatus HOM05D001131 ORTHO05D000972 6.5e-07 58.5 219 32.0
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 1.1e-06 57.8 205 32.2
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.2e-06 55.8 192 29.7
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 9.3e-06 54.7 180 28.3
Manes.11G073300 Manihot esculenta HOM05D001131 ORTHO05D000972 9.3e-06 54.7 222 27.9


User provided reference genes

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