Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0025584g0010 Nicotiana tabacum HOM05D001327 ORTHO05D010136 3.0e-66 255.0 125 100.0
Rhsim01G0074600 Rhododendron simsii HOM05D001327 ORTHO05D005399 1.6e-22 109.8 57 91.2
Peaxi162Scf00641g00008 Petunia axillaris HOM05D001327 ORTHO05D005399 2.7e-22 109.0 55 94.5
Solyc08g066820.3 Solanum lycopersicum HOM05D001327 ORTHO05D005399 4.6e-22 108.2 57 93.0
Sopen08g020780 Solanum pennellii HOM05D001327 ORTHO05D005399 4.6e-22 108.2 57 93.0
PGSC0003DMG402009603 Solanum tuberosum HOM05D001327 ORTHO05D005399 4.6e-22 108.2 57 93.0
vmacro16513 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 7.8e-22 107.5 57 89.5
Actinidia40460 Actinidia chinensis HOM05D001327 ORTHO05D005399 1.7e-21 106.3 57 87.7
CSS0001967 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 3.0e-21 105.5 54 88.9
Actinidia26397 Actinidia chinensis HOM05D001327 ORTHO05D005399 5.0e-21 104.8 67 76.1
Nitab4.5_0002551g0010 Nicotiana tabacum HOM05D001327 ORTHO05D005399 5.0e-21 104.8 51 98.0
CSS0003288 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 1.1e-20 103.6 57 86.0
CSS0028454 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 1.1e-20 103.6 57 86.0
Ciclev10008632m.g Citrus clementina HOM05D001327 ORTHO05D005399 1.9e-20 102.8 59 81.4
CANSAT11G1188 Cannabis sativa HOM05D001327 ORTHO05D005399 3.3e-20 102.1 61 75.4
CAN.G1757.2 Capsicum annuum HOM05D001327 ORTHO05D005399 1.2e-19 100.1 57 87.7
Rhsim03G0247500 Rhododendron simsii HOM05D001327 ORTHO05D005399 1.6e-19 99.8 56 82.1
AUR62011113 Chenopodium quinoa HOM05D001327 ORTHO05D005399 2.1e-19 99.4 55 87.3
AUR62033491 Chenopodium quinoa HOM05D001327 ORTHO05D005399 2.1e-19 99.4 55 87.3
HanXRQChr05g0140591 Helianthus annuus HOM05D001327 ORTHO05D005399 2.1e-19 99.4 55 81.8
Thecc.09G124100 Theobroma cacao HOM05D001327 ORTHO05D005399 2.1e-19 99.4 54 83.3
Dinv41524 Davidia involucrata HOM05D001327 ORTHO05D005399 2.8e-19 99.0 52 88.5
Lsat_1_v5_gn_8_59061 Lactuca sativa HOM05D001327 ORTHO05D005399 2.8e-19 99.0 53 84.9
Sc08g0006700 Simmondsia chinensis HOM05D001327 ORTHO05D005399 2.8e-19 99.0 52 90.4
Cc06_g08690 Coffea canephora HOM05D001327 ORTHO05D005399 4.7e-19 98.2 53 83.0
Duzib168G1530 Durio zibethinus HOM05D001327 ORTHO05D005399 4.7e-19 98.2 52 86.5
Migut.J01173 Erythranthe guttata HOM05D001327 ORTHO05D005399 4.7e-19 98.2 57 80.7
Gohir.A07G035300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 4.7e-19 98.2 52 86.5
Gohir.D07G039300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 1.1e-18 97.1 52 84.6
vmacro06123 Vaccinium macrocarpon HOM05D001327 ORTHO05D005399 1.1e-18 97.1 52 84.6
ATR1156G060 Amborella trichopoda HOM05D001327 ORTHO05D005399 1.4e-18 96.7 57 77.2
MD15G1175300 Malus domestica HOM05D001327 ORTHO05D005399 1.4e-18 96.7 57 75.4
MSTRG.19605 Avicennia marina HOM05D001327 ORTHO05D005399 1.8e-18 96.3 57 80.7
COL.COLO4_05782 Corchorus olitorius HOM05D001327 ORTHO05D005399 1.8e-18 96.3 52 88.5
ECA236G0859 Erigeron canadensis HOM05D001327 ORTHO05D005399 1.8e-18 96.3 52 82.7
FAN23G0800 Fragaria x ananassa HOM05D001327 ORTHO05D005399 1.8e-18 96.3 57 77.2
Duzib150G0117 Durio zibethinus HOM05D001327 ORTHO05D005399 2.3e-18 95.9 53 81.1
RcHm_v2.0_Chr2g0088981 Rosa chinensis HOM05D001327 ORTHO05D005399 2.3e-18 95.9 57 75.4
RcHm_v2.0_Chr2g0089031 Rosa chinensis HOM05D001327 ORTHO05D005399 2.3e-18 95.9 57 75.4
FvH4_1g03540 Fragaria vesca HOM05D001327 ORTHO05D005399 3.1e-18 95.5 57 77.2
FAN19G1565 Fragaria x ananassa HOM05D001327 ORTHO05D005399 3.1e-18 95.5 57 77.2
FAN28G2560 Fragaria x ananassa HOM05D001327 ORTHO05D005399 3.1e-18 95.5 57 77.2
GSVIVG01015513001 Vitis vinifera HOM05D001327 ORTHO05D005399 3.1e-18 95.5 52 84.6
DCAR_014874 Daucus carota HOM05D001327 ORTHO05D005399 4.0e-18 95.1 53 79.2
HanXRQChr09g0242321 Helianthus annuus HOM05D001327 ORTHO05D005399 4.0e-18 95.1 53 81.1
CiPaw.03G242900 Carya illinoinensis HOM05D001327 ORTHO05D005399 5.2e-18 94.7 51 86.3
Gorai.001G041400 Gossypium raimondii HOM05D001327 ORTHO05D005399 5.2e-18 94.7 52 82.7
Nn8g39414 Nelumbo nucifera HOM05D001327 ORTHO05D005399 5.2e-18 94.7 51 84.3
Lsat_1_v5_gn_7_45660 Lactuca sativa HOM05D001327 ORTHO05D005399 6.8e-18 94.4 50 86.0
Lalb_Chr11g0072051 Lupinus albus HOM05D001327 ORTHO05D005399 6.8e-18 94.4 52 82.7
MD02G1034500 Malus domestica HOM05D001327 ORTHO05D005399 6.8e-18 94.4 57 73.7
Cpa.g.sc75.48 Carica papaya HOM05D001327 ORTHO05D005399 8.9e-18 94.0 52 84.6
QL02p087951 Quercus lobata HOM05D001327 ORTHO05D005399 8.9e-18 94.0 52 82.7
RcHm_v2.0_Chr2g0088811 Rosa chinensis HOM05D001327 ORTHO05D005399 8.9e-18 94.0 57 73.7
Atru.chr7.1215 Acer truncatum HOM05D001327 ORTHO05D005399 1.2e-17 93.6 57 80.7
EL10Ac8g18630 Beta vulgaris HOM05D001327 ORTHO05D005399 1.2e-17 93.6 53 81.1
Haze_25606 Corylus avellana HOM05D001327 ORTHO05D005399 1.2e-17 93.6 52 84.6
ECA240G0392 Erigeron canadensis HOM05D001327 ORTHO05D005399 1.2e-17 93.6 54 75.9
Nn2g12004 Nelumbo nucifera HOM05D001327 ORTHO05D005399 1.5e-17 93.2 57 77.2
Prupe.7G240800 Prunus persica HOM05D001327 ORTHO05D005399 1.5e-17 93.2 54 75.9
Sed0000453 Sechium edule HOM05D001327 ORTHO05D005399 1.5e-17 93.2 53 83.0
unitig_46.g18723 Utricularia gibba HOM05D001327 ORTHO05D005399 1.5e-17 93.2 57 75.4
MBI04_g07642_MAGBIO Magnolia biondii HOM05D001327 ORTHO05D005399 2.0e-17 92.8 51 82.4
Manes.06G049400 Manihot esculenta HOM05D001327 ORTHO05D005399 2.0e-17 92.8 52 82.7
Zm00001eb313980 Zea mays HOM05D001327 ORTHO05D005399 2.0e-17 92.8 56 73.2
CsaV3_6G002870 Cucumis sativus L. HOM05D001327 ORTHO05D005399 2.6e-17 92.4 53 81.1
Os09g0438400 Oryza sativa ssp. japonica HOM05D001327 ORTHO05D005399 3.4e-17 92.0 56 75.0
MELO3C024971.2 Cucumis melo HOM05D001327 ORTHO05D005399 4.4e-17 91.7 52 82.7
TAR626G1113 Trochodendron aralioides HOM05D001327 ORTHO05D005399 4.4e-17 91.7 52 78.8
Hund09138 Selenicereus undatus HOM05D001327 ORTHO05D005399 5.8e-17 91.3 51 82.4
ClCG08G003060 Citrullus lanatus HOM05D001327 ORTHO05D005399 7.5e-17 90.9 53 79.2
TAR090G0001 Trochodendron aralioides HOM05D001327 ORTHO05D005399 7.5e-17 90.9 52 78.8
FAN26G1748 Fragaria x ananassa HOM05D001327 ORTHO05D005399 9.8e-17 90.5 57 73.7
Sabra06G0094800 Salix brachista HOM05D001327 ORTHO05D005399 9.8e-17 90.5 55 76.4
Aqoxy7G03725 Aquilegia oxysepala HOM05D001327 ORTHO05D005399 1.7e-16 89.7 52 80.8
CSS0040252 Camellia sinensis var. sinensis HOM05D001327 ORTHO05D005399 1.7e-16 89.7 59 76.3
Cfa003355 Carpinus fangiana HOM05D001327 ORTHO05D005399 1.7e-16 89.7 52 80.8
Gohir.D06G055300 Gossypium hirsutum HOM05D001327 ORTHO05D005399 1.7e-16 89.7 52 78.8
Gorai.010G064600 Gossypium raimondii HOM05D001327 ORTHO05D005399 1.7e-16 89.7 52 78.8
Lj7A630G51 Lonicera japonica HOM05D001327 ORTHO05D005399 1.7e-16 89.7 59 71.2
Lalb_Chr08g0234481 Lupinus albus HOM05D001327 ORTHO05D005399 1.7e-16 89.7 52 78.8
unitig_747.g21802 Utricularia gibba HOM05D001327 ORTHO05D005399 1.7e-16 89.7 53 75.5
Gorai.004G277600 Gossypium raimondii HOM05D001327 ORTHO05D005399 2.2e-16 89.4 51 80.4
THA.LOC104808999 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 2.2e-16 89.4 51 78.4
PSO170G6854 Papaver somniferum HOM05D001327 ORTHO05D005399 3.7e-16 88.6 53 75.5
PSO455G0151 Papaver somniferum HOM05D001327 ORTHO05D005399 3.7e-16 88.6 53 75.5
Potri.006G120700 Populus trichocarpa HOM05D001327 ORTHO05D005399 3.7e-16 88.6 55 74.5
Lj1g0004272 Lotus japonicus HOM05D001327 ORTHO05D005399 4.9e-16 88.2 52 73.1
BcaC02g10832 Brassica carinata HOM05D001327 ORTHO05D005399 8.3e-16 87.4 51 78.4
A07p17790 Brassica napus HOM05D001327 ORTHO05D005399 8.3e-16 87.4 51 78.4
BraA07t29498Z Brassica rapa HOM05D001327 ORTHO05D005399 8.3e-16 87.4 51 78.4
Thhalv10002015m.g Eutrema salsugineum HOM05D001327 ORTHO05D005399 8.3e-16 87.4 51 78.4
PGR142G2283 Punica granatum HOM05D001327 ORTHO05D005399 8.3e-16 87.4 51 74.5
SHI18655 Sapria himalayana HOM05D001327 ORTHO05D005399 8.3e-16 87.4 53 71.7
Sp4g08910 Schrenkiella parvula HOM05D001327 ORTHO05D005399 8.3e-16 87.4 51 78.4
CDE07G0693 Ceratophyllum demersum HOM05D001327 ORTHO05D005399 1.1e-15 87.0 51 76.5
Aa31LG5G9080 Aethionema arabicum HOM05D001327 ORTHO05D005399 1.4e-15 86.7 51 76.5
Glyma.04G148300 Glycine max HOM05D001327 ORTHO05D005399 1.4e-15 86.7 51 76.5
TWI34G1767 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 1.4e-15 86.7 52 78.8
Medtr2g054370 Medicago truncatula HOM05D001327 ORTHO05D005399 1.9e-15 86.3 50 78.0
Carub.0004s0730 Capsella rubella HOM05D001327 ORTHO05D005399 2.4e-15 85.9 51 74.5
TWI32G0662 Tripterygium wilfordii HOM05D001327 ORTHO05D005399 2.4e-15 85.9 52 78.8
arahy.Tifrunner.gnm1.ann1.F76PC0 Arachis hypogaea HOM05D001327 ORTHO05D005399 3.2e-15 85.5 51 70.6
C04p24660 Brassica napus HOM05D001327 ORTHO05D005399 3.2e-15 85.5 51 76.5
BolC4t23972H Brassica oleracea HOM05D001327 ORTHO05D005399 3.2e-15 85.5 51 76.5
Eucgr.C01140 Eucalyptus grandis HOM05D001327 ORTHO05D005399 3.2e-15 85.5 52 75.0
HPP92_016221 Vanilla planifolia HOM05D001327 ORTHO05D005399 3.2e-15 85.5 51 72.5
Phvul.009G197300 Phaseolus vulgaris HOM05D001327 ORTHO05D005399 4.1e-15 85.1 51 74.5
HPP92_016245 Vanilla planifolia HOM05D001327 ORTHO05D005399 4.1e-15 85.1 51 72.5
AL4G20030 Arabidopsis lyrata HOM05D001327 ORTHO05D005399 7.0e-15 84.3 51 74.5
AT2G26830 Arabidopsis thaliana HOM05D001327 ORTHO05D005399 7.0e-15 84.3 51 74.5
THA.LOC104815261 Tarenaya hassleriana HOM05D001327 ORTHO05D005399 7.0e-15 84.3 46 82.6
arahy.Tifrunner.gnm1.ann1.73D391 Arachis hypogaea HOM05D001327 ORTHO05D005399 1.6e-14 83.2 51 68.6
TPR.G31097 Trifolium pratense HOM05D001327 ORTHO05D005399 1.6e-14 83.2 52 73.1
VMungo1309G1396 Vigna mungo HOM05D001327 ORTHO05D005399 2.1e-14 82.8 51 70.6
Glyma.06G216800 Glycine max HOM05D001327 ORTHO05D005399 4.6e-14 81.6 51 72.5
arahy.Tifrunner.gnm1.ann1.4EC4CX Arachis hypogaea HOM05D001327 ORTHO05D005399 6.0e-14 81.3 51 70.6
arahy.Tifrunner.gnm1.ann1.8WED6E Arachis hypogaea HOM05D001327 ORTHO05D005399 6.0e-14 81.3 51 68.6
Ah.09g226340 Amaranthus hybridus HOM05D001327 ORTHO05D005399 1.0e-13 80.5 42 85.7
Ca_03162_v3 Cicer arietinum L. HOM05D001327 ORTHO05D005399 1.1e-12 77.0 48 75.0
AagrBONN_evm.TU.Sc2ySwM_117.4090 Anthoceros agrestis HOM05D001327 ORTHO05D005399 2.5e-12 75.9 52 67.3
Mapoly0033s0126 Marchantia polymorpha HOM05D001327 ORTHO05D005399 6.2e-11 71.2 49 61.2
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 8.1e-11 70.9 37 81.1
CBR_g19107 Chara braunii HOM05D001327 ORTHO05D005399 1.4e-10 70.1 59 50.8
Nitab4.5_0004285g0020 Nicotiana tabacum HOM05D005000 ORTHO05D010136 4.0e-10 68.6 82 54.9
Nitab4.5_0000786g0130 Nicotiana tabacum HOM05D005000 ORTHO05D010136 1.3e-08 63.5 33 90.9
Pp3c23_13990 Physcomitrium patens HOM05D001327 ORTHO05D005399 1.3e-08 63.5 51 52.9
Nitab4.5_0000698g0040 Nicotiana tabacum HOM05D005000 ORTHO05D010136 1.7e-08 63.2 107 42.1
SMO358G0053 Selaginella moellendorffii HOM05D001327 ORTHO05D005399 2.2e-08 62.8 40 62.5
Nitab4.5_0000517g0160 Nicotiana tabacum HOM05D005000 ORTHO05D010136 3.7e-08 62.0 33 87.9
Nitab4.5_0008344g0050 Nicotiana tabacum HOM05D005000 ORTHO05D010136 6.4e-08 61.2 54 61.1
Nitab4.5_0000316g0310 Nicotiana tabacum HOM05D005000 ORTHO05D010136 8.3e-08 60.8 32 87.5
Nitab4.5_0009542g0020 Nicotiana tabacum HOM05D005000 ORTHO05D010136 1.4e-07 60.1 33 84.8
Nitab4.5_0000425g0270 Nicotiana tabacum HOM05D005000 ORTHO05D010136 2.4e-07 59.3 33 84.8
Nitab4.5_0001310g0030 Nicotiana tabacum HOM05D005000 ORTHO05D010136 3.2e-07 58.9 33 84.8
Nitab4.5_0000308g0300 Nicotiana tabacum HOM05D005000 ORTHO05D010136 4.1e-07 58.5 33 78.8
Nitab4.5_0011054g0010 Nicotiana tabacum HOM05D005000 ORTHO05D010136 5.4e-07 58.2 28 96.4
Nitab4.5_0006392g0040 Nicotiana tabacum HOM05D005000 ORTHO05D010136 7.1e-07 57.8 33 84.8
Nitab4.5_0000783g0070 Nicotiana tabacum HOM05D005000 ORTHO05D010136 1.6e-06 56.6 32 84.4
Nitab4.5_0001171g0010 Nicotiana tabacum HOM05D005000 ORTHO05D010136 1.6e-06 56.6 33 78.8
Nitab4.5_0003163g0060 Nicotiana tabacum HOM05D005000 ORTHO05D010136 1.6e-06 56.6 32 84.4
Cre06.g291600 Chlamydomonas reinhardtii HOM05D001327 ORTHO05D005399 3.5e-06 55.5 45 53.3
Nitab4.5_0010642g0020 Nicotiana tabacum HOM05D005000 ORTHO05D010136 3.5e-06 55.5 32 78.1
Nitab4.5_0001287g0120 Nicotiana tabacum HOM05D005000 ORTHO05D010136 4.6e-06 55.1 39 64.1
Nitab4.5_0000045g0490 Nicotiana tabacum HOM05D005000 ORTHO05D010136 6.0e-06 54.7 33 78.8
Nitab4.5_0006097g0040 Nicotiana tabacum HOM05D005000 ORTHO05D012689 6.0e-06 54.7 100 37.0
Nitab4.5_0008251g0010 Nicotiana tabacum HOM05D005000 ORTHO05D010136 6.0e-06 54.7 32 78.1


User provided reference genes

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