Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0025132g0010 Nicotiana tabacum HOM05D000141 ORTHO05D004993 2.0e-220 768.8 401 100.0
Peaxi162Scf00778g00009 Petunia axillaris HOM05D000141 ORTHO05D004993 2.8e-214 748.4 401 96.5
CAN.G1344.1 Capsicum annuum HOM05D000141 ORTHO05D004993 2.5e-199 698.7 401 89.8
Solyc11g010560.3 Solanum lycopersicum HOM05D000141 ORTHO05D004993 4.3e-199 698.0 401 89.8
Sopen11g005360 Solanum pennellii HOM05D000141 ORTHO05D004993 2.4e-197 692.2 401 89.3
Potri.007G010700 Populus trichocarpa HOM05D000141 ORTHO05D004993 8.4e-187 657.1 402 84.8
MSTRG.15690 Avicennia marina HOM05D000141 ORTHO05D004993 2.5e-186 655.6 401 84.5
Manes.12G126900 Manihot esculenta HOM05D000141 ORTHO05D004993 2.5e-186 655.6 402 83.8
Dinv13609 Davidia involucrata HOM05D000141 ORTHO05D004993 4.2e-186 654.8 399 86.5
Atru.chr3.1257 Acer truncatum HOM05D000141 ORTHO05D004993 1.2e-185 653.3 402 84.3
CSS0021935 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 1.8e-184 649.4 397 85.9
Thecc.01G091400 Theobroma cacao HOM05D000141 ORTHO05D004993 5.1e-184 647.9 401 83.5
FvH4_1g19720 Fragaria vesca HOM05D000141 ORTHO05D004993 6.7e-184 647.5 402 82.3
FAN19G2112 Fragaria x ananassa HOM05D000141 ORTHO05D004993 6.7e-184 647.5 402 82.3
Rhsim10G0172400 Rhododendron simsii HOM05D000141 ORTHO05D004993 6.7e-184 647.5 397 83.6
RcHm_v2.0_Chr2g0111301 Rosa chinensis HOM05D000141 ORTHO05D004993 8.7e-184 647.1 402 82.3
TAR376G1001 Trochodendron aralioides HOM05D000141 ORTHO05D004993 8.7e-184 647.1 399 84.2
Cpa.g.sc55.32 Carica papaya HOM05D000141 ORTHO05D004993 2.5e-183 645.6 400 83.0
Prupe.6G198800 Prunus persica HOM05D000141 ORTHO05D004993 4.3e-183 644.8 402 81.8
Gohir.A11G206600 Gossypium hirsutum HOM05D000141 ORTHO05D004993 7.4e-183 644.0 401 83.0
Ciclev10024724m.g Citrus clementina HOM05D000141 ORTHO05D004993 9.7e-183 643.7 402 83.6
FAN26G1575 Fragaria x ananassa HOM05D000141 ORTHO05D004993 9.7e-183 643.7 402 81.6
Migut.K00793 Erythranthe guttata HOM05D000141 ORTHO05D004993 1.3e-182 643.3 400 83.2
TWI74G0717 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 2.2e-182 642.5 402 83.1
vmacro13004 Vaccinium macrocarpon HOM05D000141 ORTHO05D004993 2.2e-182 642.5 397 83.4
Duzib147G0545 Durio zibethinus HOM05D000141 ORTHO05D004993 3.7e-182 641.7 401 83.3
COL.COLO4_27349 Corchorus olitorius HOM05D000141 ORTHO05D004993 4.8e-182 641.3 403 83.6
SalBow5G1291 Salvia bowleyana HOM05D000141 ORTHO05D004993 4.8e-182 641.3 398 83.2
QL06p035637 Quercus lobata HOM05D000141 ORTHO05D004993 6.3e-182 641.0 401 82.0
Gorai.007G233100 Gossypium raimondii HOM05D000141 ORTHO05D004993 8.2e-182 640.6 401 82.5
TWI77G1015 Tripterygium wilfordii HOM05D000141 ORTHO05D004993 8.2e-182 640.6 402 82.8
FAN28G0107 Fragaria x ananassa HOM05D000141 ORTHO05D004993 1.1e-181 640.2 402 81.8
Eucgr.I00545 Eucalyptus grandis HOM05D000141 ORTHO05D004993 2.4e-181 639.0 397 84.6
VMungo0251G3517 Vigna mungo HOM05D000141 ORTHO05D004993 4.1e-181 638.3 402 81.6
Phvul.003G289200 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 1.5e-180 636.3 402 81.3
CANSAT54G0158 Cannabis sativa HOM05D000141 ORTHO05D004993 3.4e-180 635.2 402 82.3
MD00G1019700 Malus domestica HOM05D000141 ORTHO05D004993 1.7e-179 632.9 403 81.6
Aqoxy6G01438 Aquilegia oxysepala HOM05D000141 ORTHO05D004993 8.5e-179 630.6 399 82.0
PGR031G3531 Punica granatum HOM05D000141 ORTHO05D004993 8.5e-179 630.6 397 82.1
Glyma.18G146600 Glycine max HOM05D000141 ORTHO05D004993 2.5e-178 629.0 402 79.9
SGA_v2.0_scaffold45G17236 Striga asiatica HOM05D000141 ORTHO05D004993 3.2e-178 628.6 395 82.0
Sabra07G0008100 Salix brachista HOM05D000141 ORTHO05D004993 4.2e-178 628.2 453 75.1
CiPaw.07G048100 Carya illinoinensis HOM05D000141 ORTHO05D004993 5.5e-178 627.9 402 81.3
Hund14088 Selenicereus undatus HOM05D000141 ORTHO05D004993 1.6e-177 626.3 397 83.1
THA.LOC104801691 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 6.1e-177 624.4 402 81.3
Medtr8g471180 Medicago truncatula HOM05D000141 ORTHO05D004993 7.9e-177 624.0 402 80.1
CsaV3_6G045040 Cucumis sativus L. HOM05D000141 ORTHO05D004993 1.0e-176 623.6 402 80.6
Psat4g119320 Pisum sativum HOM05D000141 ORTHO05D004993 1.0e-176 623.6 402 79.9
MELO3C007717.2 Cucumis melo HOM05D000141 ORTHO05D004993 1.4e-176 623.2 402 80.6
ClCG01G018390 Citrullus lanatus HOM05D000141 ORTHO05D004993 5.1e-176 621.3 402 80.3
DCAR_003449 Daucus carota HOM05D000141 ORTHO05D004993 1.5e-175 619.8 398 80.9
Cfa006890 Carpinus fangiana HOM05D000141 ORTHO05D004993 2.5e-175 619.0 402 80.8
Ca_22599_v3 Cicer arietinum L. HOM05D000141 ORTHO05D004993 4.3e-175 618.2 402 78.9
Lj4g0027101 Lotus japonicus HOM05D000141 ORTHO05D004993 5.7e-175 617.8 402 79.6
AUR62017965 Chenopodium quinoa HOM05D000141 ORTHO05D004993 7.4e-175 617.5 397 81.1
TPR.G14602 Trifolium pratense HOM05D000141 ORTHO05D004993 7.4e-175 617.5 402 79.6
AUR62003657 Chenopodium quinoa HOM05D000141 ORTHO05D004993 1.3e-174 616.7 397 81.1
PSO675G5554 Papaver somniferum HOM05D000141 ORTHO05D004993 1.3e-174 616.7 399 80.2
MBI02_g32604_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D004993 2.8e-174 615.5 411 78.3
PSO541G3987 Papaver somniferum HOM05D000141 ORTHO05D004993 8.2e-174 614.0 399 79.7
EL10Ac6g15211 Beta vulgaris HOM05D000141 ORTHO05D004993 1.1e-173 613.6 399 80.7
HanXRQChr13g0405071 Helianthus annuus HOM05D000141 ORTHO05D004993 1.4e-173 613.2 399 80.7
Sed0001145 Sechium edule HOM05D000141 ORTHO05D004993 3.1e-173 612.1 402 79.1
Glyma.01G023600 Glycine max HOM05D000141 ORTHO05D004993 9.1e-173 610.5 399 78.2
Aa31LG1G16550 Aethionema arabicum HOM05D000141 ORTHO05D004993 2.2e-171 605.9 403 79.7
Glyma.08G279800 Glycine max HOM05D000141 ORTHO05D004993 3.8e-171 605.1 402 77.6
arahy.Tifrunner.gnm1.ann1.46GERB Arachis hypogaea HOM05D000141 ORTHO05D004993 6.5e-171 604.4 394 79.7
Lalb_Chr05g0228501 Lupinus albus HOM05D000141 ORTHO05D004993 8.5e-171 604.0 402 77.4
Phvul.002G147700 Phaseolus vulgaris HOM05D000141 ORTHO05D004993 7.2e-170 600.9 399 77.4
arahy.Tifrunner.gnm1.ann1.029WE6 Arachis hypogaea HOM05D000141 ORTHO05D004993 1.6e-169 599.7 394 79.2
AT5G65460 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 2.1e-169 599.4 402 79.1
Sp2g28540 Schrenkiella parvula HOM05D000141 ORTHO05D004993 2.1e-169 599.4 402 78.6
AL8G43040 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 3.6e-169 598.6 402 78.9
Glyma.02G041400 Glycine max HOM05D000141 ORTHO05D004993 7.9e-169 597.4 399 76.4
Lsat_1_v5_gn_3_61481 Lactuca sativa HOM05D000141 ORTHO05D004993 1.8e-168 596.3 399 78.7
C03p60620 Brassica napus HOM05D000141 ORTHO05D004993 2.3e-168 595.9 399 78.4
Lalb_Chr05g0216301 Lupinus albus HOM05D000141 ORTHO05D004993 2.3e-168 595.9 402 75.4
Carub.0008s2631 Capsella rubella HOM05D000141 ORTHO05D004993 1.5e-167 593.2 402 76.9
A06p32290 Brassica napus HOM05D000141 ORTHO05D004993 2.6e-167 592.4 399 78.2
BraA06t26155Z Brassica rapa HOM05D000141 ORTHO05D004993 2.6e-167 592.4 399 78.2
ECA246G1560 Erigeron canadensis HOM05D006593 ORTHO05D004993 2.6e-167 592.4 389 79.4
THA.LOC104819293 Tarenaya hassleriana HOM05D000141 ORTHO05D004993 1.3e-166 590.1 414 77.3
DCAR_016619 Daucus carota HOM05D000141 ORTHO05D004993 1.7e-166 589.7 402 76.9
Ah.03g140120 Amaranthus hybridus HOM05D000141 ORTHO05D004993 2.2e-166 589.3 432 73.4
BolC3t18317H Brassica oleracea HOM05D000141 ORTHO05D004993 6.3e-166 587.8 399 77.4
unitig_748.g7037 Utricularia gibba HOM05D000141 ORTHO05D004993 1.4e-165 586.6 388 76.3
Thhalv10012459m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 1.8e-165 586.3 390 79.0
AL6G20990 Arabidopsis lyrata HOM05D000141 ORTHO05D004993 9.1e-165 583.9 392 78.8
Actinidia25312 Actinidia chinensis HOM05D000141 ORTHO05D004993 3.5e-164 582.0 399 78.4
Carub.0006s0895 Capsella rubella HOM05D000141 ORTHO05D004993 7.7e-164 580.9 392 78.1
AT5G10470 Arabidopsis thaliana HOM05D000141 ORTHO05D004993 1.0e-163 580.5 392 77.8
CARHR279440 Cardamine hirsuta HOM05D000141 ORTHO05D004993 1.3e-163 580.1 402 76.1
BcaB01g06283 Brassica carinata HOM05D000141 ORTHO05D004993 2.9e-163 578.9 393 76.8
Sp6g32970 Schrenkiella parvula HOM05D000141 ORTHO05D004993 8.5e-163 577.4 393 77.4
ATR0665G420 Amborella trichopoda HOM05D000141 ORTHO05D004993 3.2e-162 575.5 399 76.7
BcaB01g05532 Brassica carinata HOM05D000141 ORTHO05D004993 4.2e-162 575.1 393 76.3
A03p04560 Brassica napus HOM05D000141 ORTHO05D004993 4.2e-162 575.1 393 76.3
C03p05120 Brassica napus HOM05D000141 ORTHO05D004993 4.2e-162 575.1 393 76.3
CARHR202820 Cardamine hirsuta HOM05D000141 ORTHO05D004993 4.2e-162 575.1 392 77.8
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 5.5e-162 574.7 385 79.5
BraA03t09798Z Brassica rapa HOM05D000141 ORTHO05D004993 9.4e-162 573.9 393 76.1
arahy.Tifrunner.gnm1.ann1.52WN7P Arachis hypogaea HOM05D000141 ORTHO05D004993 3.6e-161 572.0 402 73.9
arahy.Tifrunner.gnm1.ann1.5SKZ26 Arachis hypogaea HOM05D000141 ORTHO05D004993 3.6e-161 572.0 402 73.9
Eucgr.I00476 Eucalyptus grandis HOM05D000141 ORTHO05D004993 3.3e-159 565.5 398 77.4
Aa31LG3G16690 Aethionema arabicum HOM05D000141 ORTHO05D004993 7.0e-157 557.8 396 74.0
Zm00001eb372980 Zea mays HOM05D000141 ORTHO05D004993 1.6e-156 556.6 398 73.6
CDE10G0963 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 5.9e-156 554.7 400 71.5
CDE10G0717 Ceratophyllum demersum HOM05D000141 ORTHO05D004993 5.5e-154 548.1 400 70.8
HPP92_005965 Vanilla planifolia HOM05D000141 ORTHO05D004993 7.0e-149 531.2 390 72.3
CSS0023880 Camellia sinensis var. sinensis HOM05D000141 ORTHO05D004993 6.1e-145 518.1 342 81.3
Lj2C535G3 Lonicera japonica HOM05D000141 ORTHO05D004993 3.1e-141 505.8 329 81.5
unitig_0.g1718 Utricularia gibba HOM05D000141 ORTHO05D004993 9.5e-138 494.2 334 75.7
SEGI_00023 Sequoiadendron giganteum HOM05D000141 ORTHO05D004993 4.7e-137 491.9 396 64.6
Oeu012465.2 Olea europaea HOM05D000141 ORTHO05D004993 3.1e-128 462.6 382 68.1
Haze_03861 Corylus avellana HOM05D000141 ORTHO05D004993 1.1e-125 454.1 286 81.8
GSVIVG01006736001 Vitis vinifera HOM05D000141 ORTHO05D004993 1.2e-124 450.7 285 81.8
SMO169G0019 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 1.3e-118 430.6 398 56.8
AagrBONN_evm.TU.Sc2ySwM_228.4409 Anthoceros agrestis HOM05D000141 ORTHO05D004993 2.4e-117 426.4 388 58.5
Pp3c4_24010 Physcomitrium patens HOM05D000141 ORTHO05D004993 5.4e-117 425.2 410 54.4
VMungo1215G0183 Vigna mungo HOM05D000141 ORTHO05D004993 2.8e-113 412.9 286 74.8
Dinv36920 Davidia involucrata HOM05D000141 ORTHO05D004993 6.2e-113 411.8 247 87.0
SMO337G0058 Selaginella moellendorffii HOM05D000141 ORTHO05D004993 6.2e-113 411.8 400 55.5
Pp3c3_10920 Physcomitrium patens HOM05D000141 ORTHO05D004993 3.5e-108 396.0 413 51.8
Pp3c3_10921 Physcomitrium patens HOM05D000141 ORTHO05D004993 3.5e-108 396.0 413 51.8
Gohir.D11G217000 Gossypium hirsutum HOM05D000141 ORTHO05D004993 1.7e-107 393.7 249 81.5
FAN23G0308 Fragaria x ananassa HOM05D000404 ORTHO05D004993 3.0e-107 392.9 252 79.4
FAN23G1526 Fragaria x ananassa HOM05D000141 ORTHO05D004993 3.9e-107 392.5 250 80.0
Mapoly0022s0156 Marchantia polymorpha HOM05D000141 ORTHO05D004993 4.3e-106 389.0 394 53.8
Os06g0217600 Oryza sativa ssp. japonica HOM05D000141 ORTHO05D004993 4.2e-85 319.3 253 65.6
Dinv36919 Davidia involucrata HOM05D000141 ORTHO05D004993 1.9e-66 257.3 152 86.8
TAR628G0162 Trochodendron aralioides HOM05D000141 ORTHO05D004993 3.7e-65 253.1 147 88.4
Thhalv10003525m.g Eutrema salsugineum HOM05D000141 ORTHO05D004993 1.2e-63 248.1 150 84.7
CBR_g78819 Chara braunii HOM05D000141 ORTHO05D004993 1.4e-59 234.6 424 35.6
QL10p045557 Quercus lobata HOM05D000141 ORTHO05D004993 3.0e-59 233.4 145 80.0
QL10p044591 Quercus lobata HOM05D006593 ORTHO05D004993 1.5e-58 231.1 145 79.3
MD15G1313600 Malus domestica HOM05D000141 ORTHO05D004993 8.2e-57 225.3 152 74.3
PGSC0003DMG400031414 Solanum tuberosum HOM05D000141 ORTHO05D004993 6.1e-52 209.1 116 90.5
GSVIVG01005935001 Vitis vinifera HOM05D000141 ORTHO05D004993 3.0e-51 206.8 114 89.5
Haze_03862 Corylus avellana HOM05D000141 ORTHO05D004993 1.3e-49 201.4 117 87.2
MD15G1313500 Malus domestica HOM05D000141 ORTHO05D017607 4.2e-45 186.4 119 79.8
VMungo1215G2324 Vigna mungo HOM05D000141 ORTHO05D004993 7.2e-45 185.7 114 79.8
SHI12213 Sapria himalayana HOM05D000141 ORTHO05D004993 2.9e-38 163.7 130 67.7
Lsat_1_v5_gn_1_89581 Lactuca sativa HOM05D000041 ORTHO05D000452 1.8e-35 154.5 116 66.4
Psat0s1531g0080 Pisum sativum HOM05D000141 ORTHO05D017607 9.5e-29 132.1 81 85.2
COL.COLO4_22337 Corchorus olitorius HOM05D000141 ORTHO05D004993 7.5e-26 122.5 106 62.3
Lj2A535G40 Lonicera japonica HOM05D000141 ORTHO05D004993 1.9e-21 107.8 60 93.3
CAN.G1724.1 Capsicum annuum HOM05D000141 ORTHO05D004993 6.8e-19 99.4 107 54.2
MD15G1313400 Malus domestica HOM05D000141 ORTHO05D004993 8.3e-17 92.4 53 81.1
ECA236G0457 Erigeron canadensis HOM05D002544 ORTHO05D007856 2.7e-15 87.4 76 67.1
BolC6t38880H Brassica oleracea HOM05D000141 ORTHO05D017607 1.3e-14 85.1 65 69.2
BcaC08g45984 Brassica carinata HOM05D000141 ORTHO05D017607 5.6e-13 79.7 60 71.7
CBR_g8597 Chara braunii HOM05D000141 ORTHO05D004993 2.3e-11 74.3 123 35.8
A04p04820 Brassica napus HOM05D000141 ORTHO05D017607 5.2e-11 73.2 76 57.9
C06p37770 Brassica napus HOM05D000141 ORTHO05D017607 5.2e-11 73.2 57 71.9
A09p34930 Brassica napus HOM05D000141 ORTHO05D017607 2.0e-10 71.2 55 72.7
A09p55270 Brassica napus HOM05D000141 ORTHO05D017607 2.0e-10 71.2 55 72.7
C03p78970 Brassica napus HOM05D000141 ORTHO05D017607 2.4e-08 64.3 65 61.5


User provided reference genes

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