Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 4.5e-166 587.8 287 100.0
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 2.7e-163 578.6 287 98.6
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 2.1e-155 552.4 287 92.0
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.4e-154 549.7 287 91.3
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 2.3e-154 548.9 287 91.3
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 5.2e-154 547.7 287 90.9
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 1.4e-151 539.7 287 90.6
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 1.4e-143 513.1 287 84.0
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 1.6e-139 499.6 287 83.3
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.6e-139 498.4 287 82.6
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 2.0e-137 492.7 287 80.5
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 3.4e-137 491.9 289 81.3
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 9.8e-137 490.3 287 79.8
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 1.3e-136 490.0 287 78.0
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 2.8e-136 488.8 287 77.7
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 6.3e-136 487.6 287 76.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.4e-135 486.5 287 77.4
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.8e-135 486.1 287 77.7
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 2.4e-135 485.7 287 78.4
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 2.4e-135 485.7 287 78.4
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 2.4e-135 485.7 287 77.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.6e-134 483.0 287 78.4
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.7e-134 482.3 286 76.9
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 5.9e-134 481.1 287 77.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 1.0e-133 480.3 287 77.4
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 1.0e-133 480.3 287 76.3
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 2.3e-133 479.2 287 76.7
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 5.0e-133 478.0 311 73.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.0e-133 478.0 287 76.3
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 6.6e-133 477.6 287 76.0
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.5e-132 475.7 287 77.0
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 2.5e-132 475.7 287 76.7
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 4.3e-132 474.9 287 78.4
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 5.6e-132 474.6 289 76.8
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.2e-131 473.4 287 76.7
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 1.2e-131 473.4 287 76.0
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 2.1e-131 472.6 287 75.3
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 2.8e-131 472.2 287 75.3
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 8.0e-131 470.7 287 75.6
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 8.0e-131 470.7 287 76.3
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 8.0e-131 470.7 289 78.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.4e-130 469.9 287 74.9
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.4e-130 469.9 287 74.9
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 1.8e-130 469.5 287 74.9
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 2.3e-130 469.2 287 74.6
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.0e-130 468.8 287 74.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 3.0e-130 468.8 287 74.6
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 6.8e-130 467.6 287 75.3
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 8.9e-130 467.2 287 76.0
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 1.2e-129 466.8 286 74.1
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 1.2e-129 466.8 287 77.4
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 1.5e-129 466.5 289 74.7
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 2.6e-129 465.7 287 75.6
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.4e-129 465.3 287 74.2
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.4e-129 464.9 287 75.3
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 1.7e-128 463.0 287 72.1
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.2e-128 462.6 289 74.4
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 2.9e-128 462.2 289 74.7
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 3.7e-128 461.8 287 73.9
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 8.3e-128 460.7 285 73.0
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.1e-127 460.3 283 73.9
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 1.4e-127 459.9 287 74.6
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.9e-127 459.5 287 74.6
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 1.9e-127 459.5 287 73.5
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 1.9e-127 459.5 287 74.2
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.2e-127 458.8 287 71.1
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 4.1e-127 458.4 287 74.6
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 5.4e-127 458.0 287 72.8
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 9.2e-127 457.2 289 74.7
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.2e-126 456.8 286 74.8
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 1.6e-126 456.4 287 73.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 4.6e-126 454.9 307 71.0
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 6.0e-126 454.5 287 72.8
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 6.0e-126 454.5 286 74.5
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-125 453.4 286 73.1
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.7e-125 453.0 287 72.1
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.3e-125 452.6 287 75.6
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 3.0e-125 452.2 310 71.6
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.6e-125 450.7 287 74.2
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.6e-125 450.7 305 70.5
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.9e-124 449.5 317 67.5
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 4.7e-123 444.9 287 69.3
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 1.1e-122 443.7 287 69.3
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 1.5e-121 439.9 287 70.4
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 5.8e-121 438.0 287 67.9
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 5.8e-121 438.0 287 67.9
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.7e-120 436.4 287 67.2
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 2.2e-120 436.0 288 75.0
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 2.9e-120 435.6 289 71.3
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 4.9e-120 434.9 297 68.4
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 6.4e-120 434.5 287 67.6
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 6.4e-120 434.5 287 70.4
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 8.3e-120 434.1 287 67.2
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 1.1e-119 433.7 288 67.7
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 1.1e-119 433.7 288 68.1
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.9e-119 433.0 288 67.4
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 2.4e-119 432.6 287 67.6
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.4e-119 432.6 287 67.6
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 3.2e-119 432.2 288 67.7
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 4.1e-119 431.8 289 66.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 5.4e-119 431.4 288 67.4
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 5.4e-119 431.4 287 67.2
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 5.4e-119 431.4 288 67.4
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 7.0e-119 431.0 287 66.6
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-118 430.3 287 66.9
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.2e-118 430.3 287 66.9
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.6e-118 429.9 287 67.2
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 1.6e-118 429.9 287 67.2
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 3.5e-118 428.7 288 68.1
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 6.6e-117 424.5 354 58.8
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.1e-116 423.7 287 70.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 2.8e-115 419.1 287 71.8
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.6e-115 418.7 246 77.6
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 4.4e-113 411.8 286 65.4
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 5.8e-113 411.4 249 76.3
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.9e-113 410.6 246 75.6
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 5.4e-111 404.8 287 67.6
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 1.2e-110 403.7 287 67.2
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.7e-109 399.8 246 74.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 5.6e-108 394.8 249 72.3
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 5.2e-106 388.3 288 63.9
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 5.8e-105 384.8 298 62.4
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 1.3e-104 383.6 287 62.0
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 3.8e-104 382.1 288 64.2
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 1.1e-103 380.6 285 63.9
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 3.3e-100 369.0 214 79.0
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 2.8e-99 365.9 200 85.0
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 4.7e-99 365.2 295 59.7
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.1e-98 364.0 200 85.0
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 3.8e-96 355.5 201 82.1
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 6.4e-96 354.8 208 79.8
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.9e-95 353.2 200 81.0
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 1.1e-90 337.4 246 65.9
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 2.0e-89 333.2 288 57.6
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 7.6e-89 331.3 284 56.0
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 9.9e-89 330.9 270 61.1
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 4.9e-88 328.6 286 53.5
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 6.4e-88 328.2 243 67.1
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.9e-84 316.6 246 62.6
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 1.9e-76 290.0 208 69.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 8.7e-69 264.6 160 75.0
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.1e-60 237.7 184 64.7
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 2.2e-56 223.4 205 54.1
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.2e-47 192.6 109 80.7
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.6e-44 183.3 179 52.5
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.7e-35 152.9 95 72.6
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 3.1e-34 149.8 92 72.8
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 9.1e-34 148.3 95 70.5
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 3.5e-33 146.4 144 51.4
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 3.5e-33 146.4 144 51.4
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 5.0e-32 142.5 144 45.1
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 6.8e-29 132.1 87 67.8
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 6.8e-29 132.1 87 67.8
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 7.0e-26 122.1 110 65.5
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 3.1e-13 80.1 45 75.6


User provided reference genes

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