Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.7e-90 334.3 181 100.0
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 3.8e-86 321.6 178 97.8
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 4.1e-80 301.6 175 85.7
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 2.0e-79 299.3 178 91.6
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 2.2e-78 295.8 178 90.4
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 1.1e-77 293.5 178 89.9
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 7.2e-69 264.2 172 76.7
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 4.7e-68 261.5 172 73.8
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.4e-67 260.0 171 81.3
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 1.1e-66 256.9 168 76.2
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.1e-66 256.9 170 73.5
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 2.6e-66 255.8 171 74.9
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 2.6e-66 255.8 174 73.6
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 5.7e-66 254.6 164 75.6
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 9.7e-66 253.8 170 72.9
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 2.8e-65 252.3 175 73.1
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 2.8e-65 252.3 172 73.3
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 2.8e-65 252.3 172 73.3
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.8e-65 251.5 170 72.4
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 8.2e-65 250.8 172 73.3
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 4.1e-64 248.4 175 75.4
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 4.1e-64 248.4 175 76.0
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 7.0e-64 247.7 171 74.3
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 7.0e-64 247.7 170 72.9
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 7.0e-64 247.7 170 72.9
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 9.1e-64 247.3 172 70.9
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 9.1e-64 247.3 172 72.7
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 9.1e-64 247.3 164 73.8
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.2e-63 246.9 164 73.8
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 1.6e-63 246.5 172 76.2
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.5e-63 245.0 172 72.7
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 4.5e-63 245.0 170 72.4
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 7.7e-63 244.2 172 69.8
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 1.0e-62 243.8 178 77.0
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.3e-62 243.4 172 70.3
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.3e-62 243.4 177 68.4
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 2.2e-62 242.7 173 73.4
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 3.8e-62 241.9 178 72.5
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.8e-62 241.9 172 69.8
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 5.0e-62 241.5 176 69.9
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 6.5e-62 241.1 168 76.2
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 8.5e-62 240.7 178 77.0
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 1.5e-61 240.0 176 73.9
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.5e-61 240.0 175 74.9
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 2.5e-61 239.2 172 69.2
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 2.5e-61 239.2 175 70.9
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 4.2e-61 238.4 172 68.6
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 4.2e-61 238.4 165 78.8
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 5.5e-61 238.0 169 69.8
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.2e-60 236.9 175 71.4
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 2.7e-60 235.7 176 71.6
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 2.7e-60 235.7 164 75.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.7e-60 235.7 173 69.9
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.6e-60 235.3 171 69.0
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 3.6e-60 235.3 170 72.9
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 4.7e-60 235.0 162 72.2
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 6.1e-60 234.6 172 68.0
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 6.1e-60 234.6 170 72.9
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 6.1e-60 234.6 168 70.8
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 8.0e-60 234.2 177 68.9
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.0e-59 233.8 165 76.4
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.4e-59 233.4 172 69.2
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.8e-59 233.0 174 67.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 4.0e-59 231.9 175 70.3
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 6.7e-59 231.1 167 71.3
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 6.7e-59 231.1 163 76.1
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 8.8e-59 230.7 174 69.0
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 8.8e-59 230.7 178 70.8
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 1.2e-58 230.3 174 70.1
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.5e-58 229.9 172 74.4
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.6e-58 229.2 172 68.6
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 5.7e-58 228.0 174 73.6
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 2.2e-57 226.1 175 66.3
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 8.3e-57 224.2 184 70.7
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 8.3e-57 224.2 174 70.1
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.4e-56 223.4 175 66.3
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 2.4e-56 222.6 173 69.9
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.4e-56 222.6 171 64.3
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 5.3e-56 221.5 171 66.1
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-56 221.5 168 66.1
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 5.3e-56 221.5 168 75.6
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 7.0e-56 221.1 174 63.8
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.1e-56 220.7 144 72.2
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 2.7e-55 219.2 174 63.2
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 4.5e-55 218.4 172 67.4
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 7.7e-55 217.6 172 64.5
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.7e-54 216.5 173 64.2
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.7e-54 216.5 178 61.8
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 1.7e-54 216.5 174 63.8
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 2.2e-54 216.1 173 63.0
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.9e-54 215.7 173 63.0
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 3.8e-54 215.3 176 61.4
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 1.1e-53 213.8 168 70.2
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 1.1e-53 213.8 178 61.2
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.1e-53 213.8 261 47.5
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.9e-53 213.0 174 62.1
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 1.9e-53 213.0 166 65.7
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.5e-53 212.6 232 59.1
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 4.2e-53 211.8 132 79.5
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 7.2e-53 211.1 167 64.1
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 9.4e-53 210.7 164 65.9
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.2e-52 210.3 128 78.9
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 2.1e-52 209.5 128 78.9
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.7e-52 209.1 149 67.1
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 2.7e-52 209.1 149 67.1
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.7e-52 208.4 142 71.8
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 4.7e-52 208.4 145 70.3
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.8e-51 206.5 174 59.2
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 3.0e-51 205.7 149 65.8
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 8.8e-51 204.1 176 65.3
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 2.6e-50 202.6 160 64.4
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 3.4e-50 202.2 165 67.3
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 5.7e-50 201.4 171 64.3
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 7.5e-50 201.1 174 62.1
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 2.2e-49 199.5 130 73.8
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.8e-49 199.1 128 75.8
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 8.3e-49 197.6 127 75.6
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 1.1e-48 197.2 171 63.2
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 1.8e-48 196.4 169 66.3
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 2.9e-46 189.1 175 55.4
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.2e-45 185.3 165 61.2
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.6e-44 183.3 134 74.6
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 8.0e-44 181.0 179 52.5
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 6.8e-43 177.9 174 55.2
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 2.4e-40 169.5 132 64.4
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 5.9e-39 164.9 154 54.5
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 4.7e-36 155.2 177 50.3
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.8e-35 153.3 161 50.9
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.8e-35 153.3 323 34.7
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.3e-33 147.1 114 66.7
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 2.2e-33 146.4 132 69.7
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 8.3e-33 144.4 142 51.4
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.4e-32 142.9 162 52.5
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 3.2e-32 142.5 124 56.5
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.2e-31 140.6 124 55.6
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.2e-31 140.6 124 55.6
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.4e-19 100.5 183 38.3
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 4.1e-16 89.0 140 40.0
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.6e-15 85.5 110 45.5
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.9e-14 82.4 140 37.9
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.1e-13 80.9 72 48.6
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 7.3e-13 78.2 170 35.3
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 2.8e-12 76.3 55 70.9
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 4.7e-12 75.5 69 55.1
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 6.2e-12 75.1 63 57.1
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 4.0e-11 72.4 190 29.5
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 1.2e-10 70.9 173 31.8
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.6e-10 69.7 44 77.3
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 4.4e-10 68.9 44 77.3
Nitab4.5_0005191g0060 Nicotiana tabacum HOM05D000175 ORTHO05D000481 6.0e-07 58.5 65 43.1
Solyc07g053615.1 Solanum lycopersicum HOM05D000175 ORTHO05D000481 6.0e-07 58.5 65 43.1
Sopen07g027570 Solanum pennellii HOM05D000175 ORTHO05D000481 6.0e-07 58.5 65 43.1
PGSC0003DMG400009379 Solanum tuberosum HOM05D000175 ORTHO05D000481 6.0e-07 58.5 65 43.1
Nitab4.5_0000621g0080 Nicotiana tabacum HOM05D000175 ORTHO05D000481 1.3e-06 57.4 65 41.5
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 3.0e-06 56.2 65 41.5
Solyc02g077670.3 Solanum lycopersicum HOM05D000175 ORTHO05D000481 3.9e-06 55.8 65 41.5
Sopen02g022570 Solanum pennellii HOM05D000175 ORTHO05D000481 3.9e-06 55.8 65 41.5
PGSC0003DMG400031750 Solanum tuberosum HOM05D000175 ORTHO05D000481 3.9e-06 55.8 65 41.5
Aqoxy1G02281 Aquilegia oxysepala HOM05D000175 ORTHO05D000481 5.1e-06 55.5 65 40.0
Cc05_g07720 Coffea canephora HOM05D000175 ORTHO05D000481 5.1e-06 55.5 65 40.0
Peaxi162Scf00845g00119 Petunia axillaris HOM05D000175 ORTHO05D000481 5.1e-06 55.5 62 43.5
CAN.G529.55 Capsicum annuum HOM05D000175 ORTHO05D000481 6.6e-06 55.1 65 40.0
AUR62024840 Chenopodium quinoa HOM05D000175 ORTHO05D000481 6.6e-06 55.1 62 45.2
MBI07_g38300_MAGBIO Magnolia biondii HOM05D000175 ORTHO05D000481 6.6e-06 55.1 65 43.1
CARHR211770 Cardamine hirsuta HOM05D000175 ORTHO05D000481 8.7e-06 54.7 65 41.5
Haze_21622 Corylus avellana HOM05D000175 ORTHO05D010751 8.7e-06 54.7 65 43.1
FvH4_6g30510 Fragaria vesca HOM05D000367 ORTHO05D001438 8.7e-06 54.7 89 41.6
FAN02G1072 Fragaria x ananassa HOM05D000175 ORTHO05D000481 8.7e-06 54.7 65 41.5
FAN02G1247 Fragaria x ananassa HOM05D000367 ORTHO05D001438 8.7e-06 54.7 89 41.6
FAN09G0014 Fragaria x ananassa HOM05D000367 ORTHO05D001438 8.7e-06 54.7 89 41.6
FAN14G5144 Fragaria x ananassa HOM05D000367 ORTHO05D001438 8.7e-06 54.7 89 41.6
Hund07870 Selenicereus undatus HOM05D000175 ORTHO05D000481 8.7e-06 54.7 65 40.0
Zm00001eb295770 Zea mays HOM05D000175 ORTHO05D000481 8.7e-06 54.7 65 40.0


User provided reference genes

Program Settings