Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0022943g0010 Nicotiana tabacum HOM05D004139 ORTHO05D004873 2.5e-198 695.3 361 100.0
Nitab4.5_0000915g0160 Nicotiana tabacum HOM05D004139 ORTHO05D004873 9.6e-190 666.8 371 95.1
Sopen01g038830 Solanum pennellii HOM05D004139 ORTHO05D004873 3.3e-166 588.6 361 87.0
Peaxi162Scf00020g01226 Petunia axillaris HOM05D004139 ORTHO05D004873 2.8e-165 585.5 361 86.7
Solyc01g095040.3 Solanum lycopersicum HOM05D004139 ORTHO05D004873 3.7e-165 585.1 361 86.4
PGSC0003DMG400000190 Solanum tuberosum HOM05D004139 ORTHO05D004873 3.7e-165 585.1 361 86.7
CAN.G78.121 Capsicum annuum HOM05D004139 ORTHO05D004873 1.1e-164 583.6 361 85.6
Dinv43858 Davidia involucrata HOM05D004139 ORTHO05D004873 4.7e-136 488.4 366 73.5
Dinv32515 Davidia involucrata HOM05D004139 ORTHO05D004873 2.4e-132 476.1 366 72.4
CSS0009771 Camellia sinensis var. sinensis HOM05D004139 ORTHO05D004873 6.1e-128 461.5 366 70.2
Rhsim07G0011100 Rhododendron simsii HOM05D004139 ORTHO05D004873 1.4e-127 460.3 366 70.5
Actinidia10064 Actinidia chinensis HOM05D004139 ORTHO05D004873 5.7e-126 454.9 366 68.9
vmacro13237 Vaccinium macrocarpon HOM05D004139 ORTHO05D004873 7.7e-123 444.5 384 66.1
Haze_15555 Corylus avellana HOM05D004139 ORTHO05D004873 1.1e-121 440.7 366 68.3
Sabra14G0065100 Salix brachista HOM05D004139 ORTHO05D004873 5.6e-121 438.3 366 66.7
Actinidia20155 Actinidia chinensis HOM05D004139 ORTHO05D004873 7.3e-121 438.0 367 66.5
Potri.002G163200 Populus trichocarpa HOM05D004139 ORTHO05D004873 3.6e-120 435.6 365 66.6
Potri.014G089400 Populus trichocarpa HOM05D004139 ORTHO05D004873 8.0e-120 434.5 366 66.7
Cfa003879 Carpinus fangiana HOM05D004139 ORTHO05D004873 1.4e-119 433.7 366 67.5
Oeu018961.1 Olea europaea HOM05D004139 ORTHO05D004873 2.3e-119 433.0 367 64.9
QL04p055168 Quercus lobata HOM05D004139 ORTHO05D004873 8.9e-119 431.0 365 66.6
Atru.chr5.554 Acer truncatum HOM05D004139 ORTHO05D004873 1.2e-118 430.6 366 66.9
CiPaw.02G034000 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.0e-118 429.9 366 66.1
MSTRG.4838 Avicennia marina HOM05D004139 ORTHO05D004873 1.3e-117 427.2 366 63.9
Duzib133G0727 Durio zibethinus HOM05D004139 ORTHO05D004873 1.7e-117 426.8 366 65.6
Manes.05G030100 Manihot esculenta HOM05D004139 ORTHO05D004873 2.2e-117 426.4 364 65.4
MSTRG.28234 Avicennia marina HOM05D004139 ORTHO05D004873 1.1e-116 424.1 364 63.2
Migut.N01462 Erythranthe guttata HOM05D004139 ORTHO05D004873 3.2e-116 422.5 365 62.5
Sed0003876 Sechium edule HOM05D004139 ORTHO05D004873 9.2e-116 421.0 365 63.6
DCAR_008636 Daucus carota HOM05D004139 ORTHO05D004873 1.2e-115 420.6 367 63.8
TWI59G0388 Tripterygium wilfordii HOM05D004139 ORTHO05D004873 1.6e-115 420.2 366 66.1
Manes.01G252900 Manihot esculenta HOM05D004139 ORTHO05D004873 2.0e-115 419.9 365 64.9
COL.COLO4_12769 Corchorus olitorius HOM05D004139 ORTHO05D004873 3.5e-115 419.1 366 64.8
Thecc.01G353300 Theobroma cacao HOM05D004139 ORTHO05D004873 4.6e-115 418.7 366 64.8
ClCG05G001290 Citrullus lanatus HOM05D004139 ORTHO05D004873 1.3e-114 417.2 365 63.6
SalBow3G2657 Salvia bowleyana HOM05D004139 ORTHO05D004873 2.3e-114 416.4 367 64.9
CsaV3_3G008650 Cucumis sativus L. HOM05D004139 ORTHO05D004873 3.9e-114 415.6 364 62.4
Duzib138G1274 Durio zibethinus HOM05D004139 ORTHO05D004873 6.6e-114 414.8 366 63.9
Hma1.2p1_0623F.1_g191015 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 7.3e-113 411.4 364 65.9
unitig_748.g7106 Utricularia gibba HOM05D004139 ORTHO05D004873 9.5e-113 411.0 364 62.1
MD01G1070100 Malus domestica HOM05D004139 ORTHO05D004873 2.8e-112 409.5 364 63.7
PGR031G0269 Punica granatum HOM05D004139 ORTHO05D004873 2.8e-112 409.5 366 63.1
Ciclev10019285m.g Citrus clementina HOM05D004139 ORTHO05D004873 3.6e-112 409.1 367 64.3
Prupe.2G176300 Prunus persica HOM05D004139 ORTHO05D004873 1.0e-111 407.5 364 62.1
CANSAT56G2748 Cannabis sativa HOM05D004139 ORTHO05D004873 1.4e-111 407.1 367 63.8
TAR629G2568 Trochodendron aralioides HOM05D004139 ORTHO05D004873 1.8e-111 406.8 369 62.9
Gorai.007G103000 Gossypium raimondii HOM05D004139 ORTHO05D004873 3.1e-111 406.0 366 62.8
MSTRG.17294 Avicennia marina HOM05D004139 ORTHO05D004873 1.5e-110 403.7 365 60.5
AUR62022611 Chenopodium quinoa HOM05D004139 ORTHO05D004873 1.5e-110 403.7 365 63.6
Gohir.D11G096700 Gossypium hirsutum HOM05D004139 ORTHO05D004873 1.5e-110 403.7 366 62.6
Sabra02G0147300 Salix brachista HOM05D004139 ORTHO05D004873 1.5e-110 403.7 412 57.8
Cpa.g.sc184.28 Carica papaya HOM05D004139 ORTHO05D004873 3.4e-110 402.5 365 63.0
Gohir.A11G091900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 9.8e-110 401.0 366 62.3
Nn6g32432 Nelumbo nucifera HOM05D004139 ORTHO05D004873 1.3e-109 400.6 372 63.7
MELO3C006085.2 Cucumis melo HOM05D004139 ORTHO05D004873 3.7e-109 399.1 365 61.4
Gohir.A08G132500 Gossypium hirsutum HOM05D004139 ORTHO05D004873 3.7e-109 399.1 365 62.5
Gohir.D08G153900 Gossypium hirsutum HOM05D004139 ORTHO05D004873 4.9e-109 398.7 365 62.7
Gorai.004G159800 Gossypium raimondii HOM05D004139 ORTHO05D004873 4.9e-109 398.7 365 62.7
TAR636G3175 Trochodendron aralioides HOM05D004139 ORTHO05D004873 8.3e-109 397.9 368 63.6
AUR62004405 Chenopodium quinoa HOM05D004139 ORTHO05D004873 3.2e-108 396.0 365 62.7
Phvul.008G058900 Phaseolus vulgaris HOM05D004139 ORTHO05D004873 9.2e-108 394.4 364 61.3
arahy.Tifrunner.gnm1.ann1.Y78NPN Arachis hypogaea HOM05D004139 ORTHO05D004873 1.2e-107 394.0 366 61.5
SalBow5G4419 Salvia bowleyana HOM05D004139 ORTHO05D004873 1.2e-107 394.0 365 60.0
ECA236G4877 Erigeron canadensis HOM05D004139 ORTHO05D004873 2.7e-107 392.9 366 62.3
PSO478G1271 Papaver somniferum HOM05D004139 ORTHO05D004873 1.3e-106 390.6 367 61.6
Oeu054345.1 Olea europaea HOM05D004139 ORTHO05D004873 3.9e-106 389.0 364 59.9
Lj1g0024287 Lotus japonicus HOM05D004139 ORTHO05D004873 1.1e-105 387.5 364 59.6
Lalb_Chr19g0126891 Lupinus albus HOM05D004139 ORTHO05D004873 1.1e-105 387.5 363 60.6
MD07G1132400 Malus domestica HOM05D004139 ORTHO05D004873 1.5e-105 387.1 365 62.2
HanXRQChr06g0170301 Helianthus annuus HOM05D004139 ORTHO05D004873 2.5e-105 386.3 364 62.4
Lj9A588G64 Lonicera japonica HOM05D004139 ORTHO05D004873 7.3e-105 384.8 341 66.0
EL10Ac1g00363 Beta vulgaris HOM05D004139 ORTHO05D004873 1.6e-104 383.6 367 61.3
Eucgr.D02321 Eucalyptus grandis HOM05D004139 ORTHO05D004873 2.1e-104 383.3 366 59.3
CiPaw.01G065900 Carya illinoinensis HOM05D004139 ORTHO05D004873 2.8e-104 382.9 348 62.1
PSO782G2833 Papaver somniferum HOM05D004139 ORTHO05D004873 3.6e-104 382.5 367 60.2
Glyma.09G255200 Glycine max HOM05D004139 ORTHO05D004873 4.7e-104 382.1 364 60.2
Hma1.2p1_0627F.1_g191690 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.1e-103 380.9 356 62.9
SalBow5G0787 Salvia bowleyana HOM05D004139 ORTHO05D004873 3.1e-103 379.4 365 58.6
THA.LOC104801394 Tarenaya hassleriana HOM05D004139 ORTHO05D004873 4.0e-103 379.0 367 58.6
Ah.05g180200 Amaranthus hybridus HOM05D004139 ORTHO05D004873 8.9e-103 377.9 364 60.2
FAN03G2760 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.2e-102 377.5 364 59.9
FvH4_7g15180 Fragaria vesca HOM05D004139 ORTHO05D004873 2.6e-102 376.3 364 59.9
RcHm_v2.0_Chr1g0357601 Rosa chinensis HOM05D004139 ORTHO05D004873 2.6e-102 376.3 365 60.5
Glyma.18G237800 Glycine max HOM05D004139 ORTHO05D004873 6.4e-101 371.7 364 59.3
Aa31LG1G10760 Aethionema arabicum HOM05D004139 ORTHO05D004873 8.3e-101 371.3 362 58.3
Ca_07939_v3 Cicer arietinum L. HOM05D004139 ORTHO05D004873 8.3e-101 371.3 363 60.6
Lalb_Chr03g0038301 Lupinus albus HOM05D004139 ORTHO05D004873 8.3e-101 371.3 362 58.6
Nn1g01661 Nelumbo nucifera HOM05D004139 ORTHO05D004873 8.3e-101 371.3 371 59.0
Sp1g00800 Schrenkiella parvula HOM05D004139 ORTHO05D004873 1.1e-100 370.9 366 57.4
Hund27248 Selenicereus undatus HOM05D004139 ORTHO05D004873 1.4e-100 370.5 363 60.9
VMungo1383G0046 Vigna mungo HOM05D004139 ORTHO05D004873 1.4e-100 370.5 364 58.5
Psat3g106200 Pisum sativum HOM05D004139 ORTHO05D004873 9.2e-100 367.9 363 59.8
TPR.G22297 Trifolium pratense HOM05D004139 ORTHO05D004873 9.2e-100 367.9 363 60.9
AT1G01510 Arabidopsis thaliana HOM05D004139 ORTHO05D004873 4.6e-99 365.5 364 57.7
AL1G10900 Arabidopsis lyrata HOM05D004139 ORTHO05D004873 6.0e-99 365.2 364 57.7
FAN01G2783 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.0e-99 365.2 384 56.8
HanXRQChr04g0121381 Helianthus annuus HOM05D004139 ORTHO05D004873 6.0e-99 365.2 363 58.1
Cc02_g38470 Coffea canephora HOM05D004139 ORTHO05D004873 1.0e-98 364.4 365 58.1
CARHR000860 Cardamine hirsuta HOM05D004139 ORTHO05D004873 1.3e-98 364.0 366 56.8
Sc23g0002600 Simmondsia chinensis HOM05D004139 ORTHO05D004873 1.7e-98 363.6 364 59.6
FAN10G1927 Fragaria x ananassa HOM05D004139 ORTHO05D004873 3.9e-98 362.5 384 56.5
SGA_v2.0_scaffold43G16391 Striga asiatica HOM05D004139 ORTHO05D004873 5.1e-98 362.1 367 57.2
FAN10G1735 Fragaria x ananassa HOM05D004139 ORTHO05D004873 6.6e-98 361.7 384 56.2
Medtr7g078990 Medicago truncatula HOM05D004139 ORTHO05D004873 3.3e-97 359.4 364 59.6
Aqoxy7G00189 Aquilegia oxysepala HOM05D004139 ORTHO05D004873 9.5e-97 357.8 369 56.9
Carub.0001s0073 Capsella rubella HOM05D004139 ORTHO05D004873 8.1e-96 354.8 364 56.0
FAN06G0792 Fragaria x ananassa HOM05D004139 ORTHO05D004873 1.4e-95 354.0 375 56.5
FAN06G4247 Fragaria x ananassa HOM05D004139 ORTHO05D004873 8.9e-95 351.3 375 56.0
A10p00480 Brassica napus HOM05D004139 ORTHO05D004873 2.4e-92 343.2 361 53.5
MBI04_g15071_MAGBIO Magnolia biondii HOM05D004139 ORTHO05D004873 5.4e-92 342.0 370 56.2
ATR0661G136 Amborella trichopoda HOM05D004139 ORTHO05D004873 7.1e-92 341.7 372 55.6
arahy.Tifrunner.gnm1.ann1.G1BLE5 Arachis hypogaea HOM05D004139 ORTHO05D004873 9.2e-92 341.3 361 55.7
C05p00510 Brassica napus HOM05D004139 ORTHO05D004873 9.2e-92 341.3 361 52.9
BcaB03g13589 Brassica carinata HOM05D004139 ORTHO05D004873 1.6e-91 340.5 361 52.6
Thhalv10007060m.g Eutrema salsugineum HOM05D004139 ORTHO05D004873 3.5e-91 339.3 366 53.8
BolC5t28840H Brassica oleracea HOM05D004139 ORTHO05D004873 2.3e-90 336.7 362 52.8
BraA10t42327Z Brassica rapa HOM05D004139 ORTHO05D004873 5.1e-90 335.5 361 51.8
CDE11G0755 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.8e-87 327.0 366 53.3
CDE02G4181 Ceratophyllum demersum HOM05D004139 ORTHO05D004873 1.3e-85 320.9 366 53.0
SEGI_14155 Sequoiadendron giganteum HOM05D004139 ORTHO05D004873 1.6e-83 313.9 372 50.3
Os03g0126100 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 2.7e-83 313.2 371 53.4
Lsat_1_v5_gn_7_3821 Lactuca sativa HOM05D004139 ORTHO05D004873 4.3e-81 305.8 337 54.6
Sed0010543 Sechium edule HOM05D004139 ORTHO05D004873 1.7e-77 293.9 300 58.7
Zm00001eb001910 Zea mays HOM05D004139 ORTHO05D004873 1.7e-77 293.9 370 51.9
Zm00001eb021820 Zea mays HOM05D004139 ORTHO05D004873 4.2e-76 289.3 367 49.6
Os10g0533000 Oryza sativa ssp. japonica HOM05D004139 ORTHO05D004873 3.5e-75 286.2 372 48.7
unitig_0.g2768 Utricularia gibba HOM05D004139 ORTHO05D004873 6.0e-67 258.8 264 57.6
RcHm_v2.0_Chr1g0358141 Rosa chinensis HOM05D004139 ORTHO05D004873 4.8e-64 249.2 198 67.2
HPP92_003462 Vanilla planifolia HOM05D004139 ORTHO05D004873 3.4e-62 243.0 279 51.6
GSVIVG01026958001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.9e-60 237.3 165 72.7
RcHm_v2.0_Chr1g0357951 Rosa chinensis HOM05D004139 ORTHO05D004873 1.2e-59 234.6 182 67.0
Hma1.2p1_2961F.1_g330910 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 1.0e-58 231.5 246 58.5
Hund16674 Selenicereus undatus HOM05D004139 ORTHO05D004873 8.7e-58 228.4 349 45.6
Mapoly0077s0060 Marchantia polymorpha HOM05D004139 ORTHO05D004873 1.3e-56 224.6 383 41.8
Pp3c15_25330 Physcomitrium patens HOM05D004139 ORTHO05D004873 2.0e-54 217.2 382 40.3
SHI13389 Sapria himalayana HOM05D004139 ORTHO05D004873 3.8e-53 213.0 342 40.6
SMO259G0050 Selaginella moellendorffii HOM05D004139 ORTHO05D004873 3.8e-53 213.0 371 40.4
SGA_v2.0_scaffold11G05679 Striga asiatica HOM05D004139 ORTHO05D004873 1.1e-52 211.5 327 44.3
AagrBONN_evm.TU.Sc2ySwM_117.2892 Anthoceros agrestis HOM05D004139 ORTHO05D004873 3.2e-52 209.9 380 38.7
Pp3c9_22880 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.0e-50 204.9 384 38.8
RcHm_v2.0_Chr1g0358061 Rosa chinensis HOM05D004139 ORTHO05D004873 2.4e-47 193.7 157 66.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 5.3e-47 192.6 157 65.6
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.4e-46 189.9 157 65.0
Hma1.2p1_0018F.1_g013550 Hydrangea macrophylla HOM05D004139 ORTHO05D004873 5.9e-46 189.1 206 59.7
RcHm_v2.0_Chr1g0357981 Rosa chinensis HOM05D004139 ORTHO05D004873 3.2e-36 156.8 120 66.7
Hund16641 Selenicereus undatus HOM05D004139 ORTHO05D004873 9.4e-36 155.2 199 53.3
HPP92_003463 Vanilla planifolia HOM05D004139 ORTHO05D004873 2.8e-24 117.1 63 81.0
RcHm_v2.0_Chr1g0357901 Rosa chinensis HOM05D004139 ORTHO05D004873 8.2e-24 115.5 123 61.0
RcHm_v2.0_Chr1g0357961 Rosa chinensis HOM05D004139 ORTHO05D004873 4.1e-23 113.2 118 61.0
FAN06G0709 Fragaria x ananassa HOM05D004139 ORTHO05D000018 1.0e-21 108.6 106 55.7
RcHm_v2.0_Chr5g0017371 Rosa chinensis HOM05D004139 ORTHO05D004873 3.8e-21 106.7 69 71.0
RcHm_v2.0_Chr1g0356181 Rosa chinensis HOM05D004139 ORTHO05D004873 3.6e-19 100.1 59 74.6
GSVIVG01026959001 Vitis vinifera HOM05D004139 ORTHO05D004873 1.7e-16 91.3 70 70.0
RcHm_v2.0_Chr1g0358071 Rosa chinensis HOM05D004139 ORTHO05D004873 6.3e-16 89.4 58 79.3
RcHm_v2.0_Chr1g0358151 Rosa chinensis HOM05D004139 ORTHO05D004873 1.4e-15 88.2 58 77.6
RcHm_v2.0_Chr1g0357991 Rosa chinensis HOM05D004139 ORTHO05D004873 4.2e-12 76.6 59 69.5
EL10Ac9g20897 Beta vulgaris HOM05D000877 ORTHO05D012137 5.5e-12 76.3 37 81.1
Pp3c3_30270 Physcomitrium patens HOM05D004139 ORTHO05D004873 3.6e-11 73.6 98 41.8
RcHm_v2.0_Chr1g0358011 Rosa chinensis HOM05D004139 ORTHO05D004873 8.0e-11 72.4 40 82.5
Pp3c8_4660 Physcomitrium patens HOM05D004139 ORTHO05D004873 1.4e-10 71.6 46 73.9
RcHm_v2.0_Chr1g0358111 Rosa chinensis HOM05D004139 ORTHO05D004873 6.8e-10 69.3 40 80.0
CBR_g48406 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-09 68.6 49 57.1
CBR_g48408 Chara braunii HOM05D004139 ORTHO05D004873 2.8e-08 63.9 64 50.0


User provided reference genes

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