Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 8.8e-92 340.5 202 100.0
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.0e-75 286.2 202 88.1
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 2.3e-60 236.1 206 75.7
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 5.2e-60 235.0 205 75.1
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 8.9e-60 234.2 206 75.7
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 3.3e-54 215.7 191 73.3
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 1.1e-49 200.7 208 69.7
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 4.6e-40 168.7 140 65.0
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 5.3e-20 102.1 205 47.3
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 7.6e-19 98.2 126 46.8
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 1.7e-18 97.1 191 48.7
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 2.2e-18 96.7 210 44.3
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.9e-17 93.6 186 43.5
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.9e-17 93.6 186 43.5
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 5.5e-17 92.0 201 41.8
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 9.3e-17 91.3 189 41.8
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 1.2e-16 90.9 205 45.9
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 6.0e-16 88.6 205 42.9
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 6.0e-16 88.6 217 47.5
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 6.0e-16 88.6 155 42.6
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 2.3e-15 86.7 185 48.6
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 2.3e-15 86.7 202 43.6
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 2.3e-15 86.7 202 43.6
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 3.0e-15 86.3 115 42.6
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 3.9e-15 85.9 192 46.4
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 8.7e-15 84.7 100 45.0
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 1.9e-14 83.6 209 43.5
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 4.3e-14 82.4 208 45.7
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 9.6e-14 81.3 208 44.7
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 9.6e-14 81.3 216 40.3
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 9.6e-14 81.3 201 44.3
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 2.8e-13 79.7 216 41.2
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 2.8e-13 79.7 198 44.9
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 2.8e-13 79.7 201 44.8
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 2.8e-13 79.7 86 52.3
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 1.1e-12 77.8 199 44.2
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 1.4e-12 77.4 204 39.7
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 1.4e-12 77.4 229 35.8
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 2.4e-12 76.6 222 40.1
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 2.4e-12 76.6 195 43.1
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 3.1e-12 76.3 196 42.3
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 5.3e-12 75.5 92 45.7
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 1.5e-11 73.9 191 43.5
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 2.6e-11 73.2 203 40.4
CAN.G43.8 Capsicum annuum HOM05D000484 ORTHO05D008834 3.4e-11 72.8 71 50.7
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 4.5e-11 72.4 208 30.3
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 4.5e-11 72.4 192 43.8
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 5.8e-11 72.0 202 42.1
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 1.0e-10 71.2 210 42.9
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 1.3e-10 70.9 198 40.4
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 2.2e-10 70.1 201 39.8
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 2.9e-10 69.7 187 46.5
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 5.0e-10 68.9 234 35.9
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 5.0e-10 68.9 201 44.8
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 6.5e-10 68.6 81 45.7
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 3.2e-09 66.2 199 38.7
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 4.2e-09 65.9 194 40.2
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.2e-09 65.9 183 40.4
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 5.5e-09 65.5 213 30.5
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 7.1e-09 65.1 202 38.1
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.6e-08 63.9 204 30.9
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 4.6e-08 62.4 68 48.5
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 4.6e-08 62.4 191 27.2
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 6.1e-08 62.0 184 40.2
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 1.0e-07 61.2 81 46.9
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 1.3e-07 60.8 203 40.4
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 6.7e-07 58.5 90 43.3
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 8.7e-07 58.2 70 47.1
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 8.7e-07 58.2 62 50.0
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 1.1e-06 57.8 189 43.9
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 3.3e-06 56.2 200 39.5
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 3.3e-06 56.2 200 39.5
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 4.3e-06 55.8 201 38.8


User provided reference genes

Program Settings