Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1090.5 572 100.0
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 5.7e-229 797.7 599 74.6
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 1.6e-215 753.1 597 71.9
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 5.9e-210 734.6 596 70.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.3e-184 647.9 601 65.6
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 8.9e-182 641.0 630 63.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 3.8e-180 635.6 610 63.0
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 9.6e-176 620.9 625 62.9
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.8e-166 590.1 621 57.6
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.8e-166 590.1 359 85.8
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.1e-163 580.9 621 56.2
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 5.6e-160 568.5 617 55.3
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 8.4e-156 554.7 565 57.9
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 9.6e-152 541.2 618 54.4
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 5.8e-149 531.9 611 54.8
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 4.6e-146 522.3 606 51.5
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 7.9e-146 521.5 656 51.4
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 7.9e-146 521.5 621 53.5
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 1.0e-145 521.2 623 53.5
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.8e-145 520.4 616 54.1
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 2.3e-145 520.0 608 54.1
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 3.0e-145 519.6 613 52.4
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 6.7e-145 518.5 608 53.9
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 1.1e-144 517.7 616 53.1
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 4.3e-144 515.8 623 53.1
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 6.3e-143 511.9 608 52.8
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 1.1e-142 511.1 621 53.3
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.4e-142 510.8 606 51.5
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.8e-142 510.4 616 53.2
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.2e-141 507.7 608 53.3
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 4.5e-141 505.8 601 52.4
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 7.7e-141 505.0 619 53.2
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 3.8e-140 502.7 604 52.3
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 1.4e-139 500.7 624 51.8
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 3.2e-139 499.6 608 49.8
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 4.2e-139 499.2 617 50.4
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 9.4e-139 498.0 616 51.3
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 3.6e-138 496.1 616 51.0
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 3.6e-138 496.1 599 52.9
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 3.6e-138 496.1 605 50.2
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 1.0e-137 494.6 617 50.2
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.5e-136 490.7 621 49.9
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 3.3e-136 489.6 550 56.4
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.3e-136 489.2 601 50.2
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 4.3e-136 489.2 638 52.0
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 4.8e-135 485.7 620 50.8
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 6.3e-135 485.3 608 52.8
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 9.1e-134 481.5 603 48.9
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.0e-133 480.3 603 48.4
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 2.6e-133 479.9 603 48.6
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 5.9e-133 478.8 606 49.5
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.2e-132 476.9 600 49.3
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.9e-132 476.5 614 49.3
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 1.1e-131 474.6 602 48.7
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 1.1e-131 474.6 618 46.9
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 4.2e-131 472.6 603 48.6
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 4.2e-131 472.6 591 48.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 4.2e-131 472.6 614 48.7
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 5.5e-131 472.2 599 49.7
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.2e-130 471.1 601 48.4
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 1.4e-129 467.6 602 49.5
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 9.7e-128 461.5 599 49.9
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 6.3e-127 458.8 604 49.3
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 6.3e-127 458.8 608 49.7
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 5.3e-126 455.7 604 47.2
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 2.6e-125 453.4 681 44.8
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 9.4e-123 444.9 642 43.8
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 2.1e-122 443.7 605 48.1
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 3.6e-122 443.0 602 48.3
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 8.0e-122 441.8 602 48.2
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 7.4e-120 435.3 623 46.1
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 8.2e-119 431.8 600 47.0
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.4e-118 431.0 599 50.4
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 4.1e-118 429.5 598 45.7
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 2.0e-117 427.2 609 47.6
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 1.5e-115 421.0 579 46.6
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 4.2e-115 419.5 617 45.2
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 9.4e-115 418.3 591 46.2
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.6e-114 417.5 541 50.8
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.6e-114 416.4 428 55.8
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 8.0e-114 415.2 587 44.5
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 1.0e-108 398.3 634 41.5
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.2e-108 397.1 630 43.5
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 2.1e-106 390.6 609 44.2
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 7.0e-102 375.6 551 48.6
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 2.0e-101 374.0 553 47.6
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 5.0e-100 369.4 573 44.7
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 1.9e-99 367.5 570 46.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.9e-99 367.5 553 46.5
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 3.3e-99 366.7 605 42.6
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.2e-98 364.8 560 45.5
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 4.7e-98 362.8 620 40.5
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 8.9e-97 358.6 523 48.4
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 3.4e-96 356.7 541 45.3
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 1.7e-95 354.4 541 45.1
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.7e-95 353.2 580 45.0
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.8e-94 350.9 544 45.0
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 1.8e-94 350.9 544 45.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.5e-93 346.3 610 38.7
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 1.0e-92 345.1 566 45.1
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 4.3e-91 339.7 480 47.9
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 1.2e-88 331.6 744 35.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 7.5e-88 328.9 519 43.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 2.9e-87 327.0 490 46.3
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 4.6e-85 319.7 529 43.5
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 1.7e-79 301.2 510 41.4
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 3.5e-77 293.5 458 42.1
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 3.1e-73 280.4 531 37.5
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 6.8e-73 279.3 428 43.0
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-67 261.5 483 39.8
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 8.1e-66 255.8 291 49.5
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 1.8e-65 254.6 289 49.5
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.6e-61 241.5 496 37.5
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 2.9e-55 220.7 356 44.4
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 2.6e-48 197.6 130 78.5
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 8.7e-44 182.6 233 47.6
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 8.1e-42 176.0 173 52.6
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 1.2e-37 162.2 449 32.1
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.8e-36 158.3 446 33.6
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 5.7e-35 153.3 279 40.1
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.1e-33 149.1 177 42.9
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.2e-31 141.4 106 88.7
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 6.1e-29 133.3 89 69.7
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 9.0e-25 119.4 414 29.7
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.7e-23 115.2 126 65.9
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 8.5e-23 112.8 130 60.0
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.4e-22 112.1 99 56.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 2.5e-22 111.3 89 61.8
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.4e-17 94.7 83 62.7
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 8.5e-15 86.3 366 26.2
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.7e-13 80.5 68 57.4
SEGI_38924 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 7.0e-09 66.6 53 60.4
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 2.0e-08 65.1 32 96.9
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 6.5e-07 60.1 130 39.2
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 8.5e-07 59.7 38 68.4


User provided reference genes

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