Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 0.0e+00 1260.4 651 100.0
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 6.2e-280 967.2 651 81.6
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 8.2e-248 860.5 644 71.7
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 2.6e-246 855.5 645 70.5
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 1.3e-242 843.2 647 70.8
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 3.9e-226 788.5 617 66.6
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 3.1e-223 778.9 651 62.8
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 1.3e-221 773.5 647 64.0
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 2.9e-221 772.3 662 62.7
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 2.7e-219 765.8 650 61.8
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 3.6e-219 765.4 658 60.8
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 8.0e-219 764.2 626 63.7
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 1.0e-218 763.8 658 62.6
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.4e-218 763.5 614 62.7
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 1.1e-215 753.8 648 64.0
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 5.3e-215 751.5 648 62.7
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 7.0e-215 751.1 648 62.8
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 9.1e-215 750.7 651 61.6
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 1.5e-212 743.4 654 59.8
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.6e-211 740.0 651 59.9
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 8.0e-211 737.6 651 59.9
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 8.0e-211 737.6 647 62.3
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 1.8e-210 736.5 612 62.1
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 1.5e-209 733.4 618 61.3
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 2.0e-209 733.0 653 62.8
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 4.4e-209 731.9 656 59.1
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 9.8e-209 730.7 656 60.1
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 1.3e-208 730.3 616 62.3
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 6.3e-208 728.0 647 58.4
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 1.1e-207 727.2 619 61.1
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 4.1e-207 725.3 660 60.0
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 5.4e-207 724.9 652 60.9
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 9.1e-207 724.2 612 61.6
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 1.2e-206 723.8 654 59.8
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 3.5e-206 722.2 653 57.7
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 4.5e-206 721.8 612 59.6
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 2.3e-205 719.5 724 57.0
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 2.3e-205 719.5 724 57.0
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 3.8e-205 718.8 612 59.8
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 5.0e-205 718.4 653 60.6
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 6.5e-205 718.0 649 58.4
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 8.6e-205 717.6 653 59.7
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 3.2e-204 715.7 650 57.4
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 4.2e-204 715.3 619 61.1
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 5.2e-202 708.4 608 59.2
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 8.8e-202 707.6 645 55.8
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 1.5e-201 706.8 655 58.3
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 2.6e-201 706.1 656 57.5
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 2.6e-201 706.1 655 58.2
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 3.4e-201 705.7 609 62.9
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 7.5e-201 704.5 611 60.2
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 1.7e-200 703.4 647 55.8
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 1.4e-199 700.3 641 59.8
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 3.1e-199 699.1 656 58.2
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 2.9e-197 692.6 655 58.3
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 3.8e-197 692.2 656 57.5
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 6.6e-197 691.4 653 58.8
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 6.6e-197 691.4 658 56.7
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 7.3e-196 688.0 667 56.4
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 1.6e-195 686.8 661 57.2
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 2.1e-195 686.4 616 57.8
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 3.6e-195 685.6 658 56.7
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 3.0e-194 682.6 655 57.3
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 3.4e-193 679.1 599 58.1
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 7.5e-193 677.9 581 62.7
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 1.1e-191 674.1 525 63.0
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 2.0e-190 669.8 640 55.0
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 2.0e-190 669.8 592 62.0
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 3.3e-188 662.5 641 54.9
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 3.3e-188 662.5 566 59.0
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 1.2e-185 654.1 653 53.9
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 1.9e-183 646.7 591 56.9
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 2.4e-183 646.4 514 62.1
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 7.0e-183 644.8 584 57.5
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 9.2e-183 644.4 586 55.6
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.0e-181 641.0 641 55.2
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.3e-181 640.6 611 54.2
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 1.1e-178 630.9 611 54.2
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 7.5e-177 624.8 621 53.3
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 2.9e-176 622.9 591 53.6
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 3.7e-176 622.5 580 56.4
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 4.9e-176 622.1 642 54.7
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 4.9e-176 622.1 642 54.7
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.2e-175 619.4 560 56.4
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 7.1e-175 618.2 580 56.0
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 1.2e-174 617.5 545 55.2
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 3.9e-173 612.5 529 57.5
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 5.1e-173 612.1 529 57.5
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 2.5e-172 609.8 593 54.1
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 5.6e-172 608.6 595 55.3
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 2.2e-168 596.7 595 53.9
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 1.2e-166 590.9 622 50.6
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 1.4e-162 577.4 609 51.9
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 2.0e-153 547.0 651 48.2
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 2.4e-151 540.0 563 50.1
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 3.9e-149 532.7 539 49.0
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 6.7e-149 531.9 529 49.0
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 1.3e-147 527.7 563 49.0
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 4.6e-142 509.2 442 58.6
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 1.4e-138 497.7 608 47.7
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 1.5e-137 494.2 523 47.4
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 1.3e-123 448.0 548 46.2
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 8.9e-85 318.9 336 53.6
Hma1.2p1_0227F.1_g096470 Hydrangea macrophylla HOM05D006922 ORTHO05D008564 6.2e-70 269.6 187 66.8
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 4.4e-52 210.3 143 79.0
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 1.1e-47 195.7 338 41.1
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 2.5e-47 194.5 358 35.5
SEGI_07058 Sequoiadendron giganteum HOM05D006922 ORTHO05D008564 3.3e-47 194.1 166 53.6
FAN21G0821 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.9e-43 181.0 104 73.1
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 4.9e-43 180.3 538 27.5
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.1e-41 174.9 212 48.6
Actinidia16090 Actinidia chinensis HOM05D006922 ORTHO05D008564 4.6e-33 147.1 92 68.5
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 3.8e-27 127.5 102 58.8
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 3.2e-26 124.4 99 59.6
Actinidia25165 Actinidia chinensis HOM05D006922 ORTHO05D008564 1.6e-25 122.1 74 73.0
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 2.7e-25 121.3 99 58.6
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 6.7e-16 90.1 86 55.8
CDE02G4620 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 4.2e-10 70.9 44 70.5
Actinidia14201 Actinidia chinensis HOM05D000103 ORTHO05D000049 1.4e-08 65.9 51 54.9
Lsat_1_v5_gn_3_57841 Lactuca sativa HOM05D003404 ORTHO05D004052 6.7e-08 63.5 48 52.1
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.1e-07 62.8 81 42.0
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.5e-07 61.6 280 24.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 4.3e-07 60.8 83 39.8
Actinidia14207 Actinidia chinensis HOM05D000103 ORTHO05D008564 2.2e-06 58.5 41 63.4
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.2e-06 58.5 83 38.6
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 2.2e-06 58.5 83 38.6
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 2.8e-06 58.2 269 24.2
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 4.8e-06 57.4 158 27.8
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 4.8e-06 57.4 79 40.5
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 4.8e-06 57.4 80 40.0
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 6.3e-06 57.0 83 41.0
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 6.3e-06 57.0 79 38.0
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 8.2e-06 56.6 83 38.6
AUR62026981 Chenopodium quinoa HOM05D000096 ORTHO05D000045 8.2e-06 56.6 40 65.0
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 8.2e-06 56.6 81 39.5


User provided reference genes

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