Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.7e-91 338.2 169 100.0
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.7e-91 338.2 169 100.0
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.2e-86 323.2 169 94.7
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 9.7e-84 313.5 169 91.7
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 6.3e-83 310.8 169 91.1
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 8.2e-83 310.5 168 91.1
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 8.2e-83 310.5 168 91.1
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 8.5e-80 300.4 169 89.9
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 2.5e-79 298.9 169 87.6
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 5.5e-79 297.7 169 87.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 7.2e-79 297.4 169 87.0
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 7.2e-79 297.4 169 88.2
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 9.4e-79 297.0 167 88.0
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 2.1e-78 295.8 169 85.8
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.7e-78 295.4 169 87.6
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 2.7e-78 295.4 167 87.4
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 4.6e-78 294.7 168 88.1
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 1.4e-77 293.1 172 86.0
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 1.4e-77 293.1 169 85.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.8e-77 292.7 170 85.9
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 2.3e-77 292.4 169 84.0
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 2.3e-77 292.4 169 86.4
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.1e-76 290.0 169 84.6
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.1e-76 290.0 172 84.9
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 2.0e-76 289.3 172 83.1
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.0e-76 289.3 169 85.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.0e-76 289.3 169 85.8
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 2.0e-76 289.3 170 84.1
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 3.3e-76 288.5 160 88.8
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.3e-76 288.1 169 85.8
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 7.4e-76 287.3 173 82.7
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 7.4e-76 287.3 170 84.1
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 1.7e-75 286.2 173 85.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 2.2e-75 285.8 172 82.0
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 2.2e-75 285.8 173 85.0
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 2.2e-75 285.8 173 85.0
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.8e-75 285.4 169 84.6
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.8e-75 285.4 174 81.6
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 6.3e-75 284.3 169 83.4
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 8.2e-75 283.9 155 91.0
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 1.1e-74 283.5 172 82.6
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.8e-74 282.7 169 82.8
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 2.4e-74 282.3 192 77.1
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 3.1e-74 282.0 171 81.9
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 6.9e-74 280.8 169 83.4
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.2e-73 280.0 171 81.9
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 2.0e-73 279.3 176 79.0
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.0e-73 279.3 173 80.3
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 3.4e-73 278.5 171 81.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 3.4e-73 278.5 172 82.6
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 3.4e-73 278.5 172 82.6
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 4.5e-73 278.1 169 81.1
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 7.7e-73 277.3 168 81.5
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 7.7e-73 277.3 171 81.3
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 1.3e-72 276.6 155 89.0
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 2.9e-72 275.4 171 81.3
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.8e-72 275.0 168 79.8
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.0e-72 274.6 172 80.8
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 6.5e-72 274.2 167 82.0
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 8.5e-72 273.9 167 80.2
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 1.1e-71 273.5 169 82.8
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.1e-71 273.5 169 82.8
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 5.5e-71 271.2 169 82.2
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 5.5e-71 271.2 169 82.2
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 7.2e-71 270.8 169 79.9
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 9.4e-71 270.4 167 81.4
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 9.4e-71 270.4 151 86.8
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.2e-70 270.0 153 85.0
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.2e-70 270.0 167 80.2
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 1.2e-70 270.0 175 78.3
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 1.6e-70 269.6 179 77.7
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 3.6e-70 268.5 169 77.5
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 6.1e-70 267.7 153 84.3
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 6.1e-70 267.7 153 85.0
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 7.9e-70 267.3 171 77.2
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.0e-69 266.9 151 86.8
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.4e-69 266.5 172 77.9
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.0e-69 265.4 151 86.1
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 3.0e-69 265.4 172 76.7
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 3.9e-69 265.0 181 74.6
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 3.9e-69 265.0 158 82.9
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 1.5e-68 263.1 164 79.9
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 2.0e-68 262.7 150 84.7
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 3.3e-68 261.9 152 84.2
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 3.3e-68 261.9 137 97.1
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 3.3e-68 261.9 169 75.7
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 4.4e-68 261.5 152 84.2
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 4.4e-68 261.5 167 78.4
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 5.7e-68 261.2 150 85.3
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 7.4e-68 260.8 169 75.7
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 1.3e-67 260.0 151 84.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.3e-67 260.0 151 84.8
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 1.3e-67 260.0 172 75.0
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 2.8e-67 258.8 151 82.1
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 4.8e-67 258.1 151 84.8
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 6.3e-67 257.7 152 82.9
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 8.2e-67 257.3 170 74.1
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-66 256.9 166 77.1
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 2.4e-66 255.8 154 80.5
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.1e-66 255.4 137 92.0
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 9.1e-66 253.8 151 82.1
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 2.0e-65 252.7 137 91.2
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 5.9e-65 251.1 137 90.5
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.0e-64 248.1 137 88.3
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 1.1e-63 246.9 164 76.8
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 2.5e-63 245.7 138 85.5
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.5e-63 245.7 140 88.6
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 3.2e-63 245.4 167 75.4
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 5.5e-63 244.6 137 86.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 9.4e-63 243.8 163 75.5
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-62 243.4 150 80.7
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 1.6e-62 243.0 168 74.4
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 2.1e-62 242.7 176 71.0
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 8.0e-62 240.7 138 85.5
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.7e-59 231.9 148 76.4
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.1e-58 228.8 169 72.2
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 2.5e-55 219.2 164 61.6
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 3.2e-55 218.8 162 69.8
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.0e-52 209.5 130 82.3
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 3.7e-51 205.3 149 72.5
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 1.8e-50 203.0 109 92.7
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 7.0e-50 201.1 167 56.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 7.2e-47 191.0 143 69.9
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 9.4e-47 190.7 108 84.3
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 4.7e-46 188.3 126 77.0
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 6.8e-45 184.5 109 80.7
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 6.8e-45 184.5 109 87.2
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 9.1e-42 174.1 113 77.9
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 1.1e-39 167.2 150 55.3
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 1.2e-36 157.1 127 65.4
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 2.0e-36 156.4 100 77.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 4.9e-35 151.8 103 71.8
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 9.2e-34 147.5 185 49.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.6e-31 138.3 69 92.8
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 5.6e-31 138.3 82 82.9
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.6e-30 135.6 112 64.3
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 5.2e-29 131.7 111 64.0
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.0e-28 129.8 154 50.0
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.4e-28 129.0 69 87.0
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 9.8e-28 127.5 85 74.1
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.9e-27 125.9 63 92.1
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.2e-25 120.6 69 84.1
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 5.0e-24 115.2 64 90.6
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.1e-21 105.9 112 58.0
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 3.2e-18 95.9 66 71.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.6e-17 93.6 69 69.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 3.9e-16 89.0 58 72.4
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 1.9e-15 86.7 58 74.1
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 2.8e-14 82.8 44 86.4


User provided reference genes

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